NO04G03160, NO04G03160 (gene) Nannochloropsis oceanica

Overview
NameNO04G03160
Unique NameNO04G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr4:864590..865975 +

Link to JBrowse

Properties
Property NameValue
DescriptionQb-vti1-family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:864590..865975 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
BLAST of NO04G03160 vs. NCBI_GenBank
Match: EWM28789.1 (qb- vti1-family [Nannochloropsis gaditana])

HSP 1 Score: 263.1 bits (671), Expect = 8.100e-67
Identity = 145/226 (64.16%), Postives = 177/226 (78.32%), Query Frame = 0
Query:    8 MEEEYYRLSRAINKGIDEL-------GSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVFNYGVLARYRKND 227
            M+EEYYRLSRAIN+G++EL       G   S         M PS L R++AE+D+DLAEAEGQVK LE+E++ M   DK++ R+K+ QFRNDL A+RRSF +AKA AE+ +L+Q +  SGK K   ERLM STEQL+DA+++V ETE +G+GII QME+QREQLVRASE+VQETNWFTRSARQVMNNMHLRA+RHKACLILII F  +LIGIVFNYGVLARY K +
Sbjct:    1 MQEEYYRLSRAINRGLNELTRGRLDGGGSIS----GGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKN 222          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: CBN79289.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 90.1 bits (222), Expect = 9.400e-15
Identity = 67/215 (31.16%), Postives = 111/215 (51.63%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGID--ELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPG-------------SGKLKG-----ATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILII 204
            EE Y+R S +IN+ I+  +L +   +V  +  P               +DL EAE  VK +E+E+R M   +++  + + +Q R DL ALRRS   A   A+   L++++ G              G L G     A + L RS   L D++R++ ETE +G G++  +ESQRE L+R+   V++T      AR+++ ++  R +RH+ CL  +I
Sbjct:   21 EESYHRCSMSINRAINGIQLNNLVDAVGATSLP---------------LDLQEAEQHVKGMEIEVRSMKGNERRQCQSRANQCRADLKALRRSIDQAGQRAQAEELMRRSGGGAIGGGPRNFSESGGDLGGLGPDLAQQSLARSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRTSVRDTGAAAGQARRLLGSISRRELRHRLCLYAVI 220          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: OQR88372.1 (hypothetical protein THRCLA_10365 [Thraustotheca clavata])

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-12
Identity = 67/219 (30.59%), Postives = 110/219 (50.23%), Query Frame = 0
Query:    3 DAHKHMEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKK-------IYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVF 215
            D    +EE+Y    RAIN  I +L           T +   S+  +I      ++ EA+  +K + VE+R  +   +K       +YR++I+ F+ D   L R+   AK +         A    ++   T RL R+++QL  +KR+V ETED+G G+++ +  QRE L+ A +KV+ET   T  AR+V+  M  R + +K  L  +I+   I I +VF
Sbjct:    2 DRFLSLEEDYIECKRAINNSIHDL-----------TQSNQKSSARQI---AQANIVEAQRCLKLMSVEIRGRSPAQRKEMQAKINVYREEIAGFQRD---LERAMLLAKDMPSNSSTQSDAARYDRIVTNTNRLQRASDQLEQSKRIVAETEDIGIGVMDTLAQQRETLLSAHDKVRETRELTGDARRVLLRMSQRVLTNKITLWFVIIVLIISICLVF 203          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: OQR81335.1 (hypothetical protein ACHHYP_16493 [Achlya hypogyna])

HSP 1 Score: 71.6 bits (174), Expect = 3.500e-9
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query:    8 MEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKG-----------ATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVF 215
            +EE+Y    R IN  I +L         S T   A    +R LA+    + EA+  +K + VE+R      +K  + KI+ +R+++   +R         E+ +L+  AP +    G            T RL RS++QL  +KR+V ETE +G  +++ +  QRE L+ A +KV+ET   T  AR+V+  M  R + +K  L  +IV   I I +VF
Sbjct:   11 LEEDYVDCKRTINNCIHDL---------SQTDQKA---AARQLAQ--ATIVEAQRCLKLMAVEVRGRPPTLRKEMQAKINVYRDEIAGFQRDL-------ERAMLLGTAPPTAAATGNDLARYDRIVTNTNRLQRSSDQLEQSKRIVAETEQIGITVMDTLAQQRETLLSAHDKVRETRELTGDARRVLVRMGQRVLTNKITLWFVIVVLVISICLVF 207          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_012204138.1 (hypothetical protein SPRG_09203 [Saprolegnia parasitica CBS 223.65] >KDO25064.1 hypothetical protein SPRG_09203 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-8
Identity = 63/219 (28.77%), Postives = 103/219 (47.03%), Query Frame = 0
Query:    8 MEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGA------------TERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVF 215
            +EE+Y    R IN  I +L                    +R LA+    + EA+  +K + VE+R  +   +K  + KI+ +R+++   +R    A       +L++  P S     A            T RL RS++QL  +KR+V ETE +G  +++ +  QRE L+   +KV+ET   T  AR+V+  M  R + +K  L  +IV   I I +VF
Sbjct:   11 LEEDYIDCKRTINNCIHDL------------TQTDQKNAARQLAQ--ATIVEAQRCLKLMAVEIRGRSPTLRKEMQAKINVYRDEIAGFQRDLERA------MLLVKATPPSATASSANDAARYDRIVTNTNRLQRSSDQLEQSKRIVAETEQIGITVMDTLAQQRETLLSTHDKVRETRELTGDARRVLLRMSQRVLTNKITLWFVIVVLVISICLVF 209          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: ETN62886.1 (SNARE Vti1a protein [Anopheles darlingi])

HSP 1 Score: 68.6 bits (166), Expect = 2.900e-8
Identity = 46/175 (26.29%), Postives = 100/175 (57.14%), Query Frame = 0
Query:   47 SRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEK-----------RILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILI 211
            +++++++D  L E++  ++ + +E+R +    +  Y  +++ ++ +   L++ FG+AKA   K            I IQ+     +L   TERL R++  LNDA R+  ETE +G  +++ +  QRE + R+  +++ET+     + +++N+M +RA+R K  L+++I   F+++
Sbjct:   34 NKLISDVDRQLEESQELLEQIGLEIRDIPQGSRAAYTSRLNCYQAEWKRLQQEFGNAKAARPKAGYDSSVDDFDEIGIQE-DQKRRLLDNTERLERTSNYLNDAYRVTIETEQIGAQVLSDLSQQRETIQRSRARLRETDADLSRSSRILNSMIMRAMREKFILVVVIAAIFLVL 207          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_009827441.1 (hypothetical protein H257_04567 [Aphanomyces astaci] >ETV82770.1 hypothetical protein H257_04567 [Aphanomyces astaci])

HSP 1 Score: 67.4 bits (163), Expect = 6.500e-8
Identity = 55/205 (26.83%), Postives = 103/205 (50.24%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIV 214
            +EEY  L+++++  I E+ S Y         A+  +T        D+ L +A   ++ +E+E+R ++A  K+    K+ Q++  L +L     + KA  +K  L   A    ++ GAT++L ++ +++  A + V ETE+V  GI  ++   RE++    +KV+  N   RS  +++  M  R  R K  L  ++ F  + I IV
Sbjct:    9 DEEYKSLAQSVSSKISEIAS-YEEEPDKRRTAITHAT--------DL-LTQASQLIQQMELEVRSLDAATKRELSKKVDQYKKSLKSLSDDLKNIKAKEDKEGLFGSAEARSRMAGATQKLQQTGDRIKAAHQTVLETEEVAIGIQEELGRNREKIQATHDKVKGVNDMARSGGRILGRMSARDKRQKLILYGVMGFMVLAILIV 203          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_002949312.1 (Qb-SNARE, VTI1-family [Volvox carteri f. nagariensis] >EFJ49805.1 Qb-SNARE, VTI1-family [Volvox carteri f. nagariensis])

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7
Identity = 57/224 (25.45%), Postives = 113/224 (50.45%), Query Frame = 0
Query:    9 EEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAK---------AIAEKRILIQQAPG----------SGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIV 214
            E EY   S  I++ I+      S++T      ++  T  + L E+D D+ EA+  +K +++E R +     K  ++K+ +++ DL +LR     A+         A AE    I Q  G            ++  A+ +L +S ++L   K+++ ETE++G GI+  + +QRE ++ + + +   +     AR++++NM  R +++K  LI+  +  F+L GI+
Sbjct:   12 ENEYCNKSTDISRKIN------SAIT------LSGETKRKKLVEVDADIKEADNIIKKMDMEARSVAPERSKQLQNKVKEYKADLASLREQLTKARTAAGSEYDAARAELSQNISQGLGIDYASSSQAQRDRMLSASAKLEQSNDRLQTGKKLLAETEELGSGILANLAAQREVIIHSRDTLHGADDNISKARKILSNMSRRMLQNK--LIMFGIIGFLLAGII 221          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_001693784.1 (Qb-SNARE protein, VTI1-family [Chlamydomonas reinhardtii] >PNW73902.1 hypothetical protein CHLRE_13g577500v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7
Identity = 56/217 (25.81%), Postives = 111/217 (51.15%), Query Frame = 0
Query:   15 LSRAINKGIDELGSKYSSVTCSPTPA--MAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAI--------AEKRILIQQAPGSG----KLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHK-----------ACLILIIVFQ 207
            +S   N+  +E  +K + ++   T A  +      + L E+D+D+ EA+  +K ++ E R +    +K  ++K+ +++ DL +L+     A++         AE  + +  A  S     ++  AT +L +S E+L   K ++ ETED+G GI+  + SQRE +VR+ + +   +     AR+++++M  R +++K           A +ILII F+
Sbjct:    4 VSALFNQYENEYCNKSTDISRKITTASTLGAEAKRKKLVEVDVDIKEADTIIKKMDNEARSVAPDRQKQLQNKVKEYKADLASLKEQLQKARSSTSDFEAGRAELGLGMDYASSSAAQRDRMLSATAKLEQSDERLKQGKALLAETEDLGAGILANLHSQRETIVRSRDTLHGADDNITKARKILSSMSKRMLQNKLIMFGIIGTLLAAIILIIYFK 220          
BLAST of NO04G03160 vs. NCBI_GenBank
Match: XP_008619157.1 (hypothetical protein SDRG_14781 [Saprolegnia diclina VS20] >EQC27457.1 hypothetical protein SDRG_14781 [Saprolegnia diclina VS20])

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7
Identity = 58/207 (28.02%), Postives = 94/207 (45.41%), Query Frame = 0
Query:    8 MEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVF 215
            +EE+Y    R IN  I +L         +    +A +T+      + +   E  G+   L  E++        +YRD+I+ F+ DL                      A    ++   T RL RS++QL  +KR+V ETE +G  +++ +  QRE L+   +KV+ET   T  AR+V+  M  R + +K  L  +IV   I I +VF
Sbjct:   11 LEEDYIDCKRTINNCIHDLTQTEQK---NAARQLAQATIVEAQRCLKLMAVEVRGRSPTLRKEMQ----AKINVYRDEIAGFQRDLERAMLLXXXXXXXXXXXXXXXDAARYDRIVTNTNRLQRSSDQLEQSKRIVAETEQIGITVMDTLAQQRETLLSTHDKVRETRELTGDARRVLLRMSQRVLTNKITLWFVIVVLVISICLVF 210          
The following BLAST results are available for this feature:
BLAST of NO04G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28789.18.100e-6764.16qb- vti1-family [Nannochloropsis gaditana][more]
CBN79289.19.400e-1531.16Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
OQR88372.11.500e-1230.59hypothetical protein THRCLA_10365 [Thraustotheca c... [more]
OQR81335.13.500e-930.73hypothetical protein ACHHYP_16493 [Achlya hypogyna... [more]
XP_012204138.11.000e-828.77hypothetical protein SPRG_09203 [Saprolegnia paras... [more]
ETN62886.12.900e-826.29SNARE Vti1a protein [Anopheles darlingi][more]
XP_009827441.16.500e-826.83hypothetical protein H257_04567 [Aphanomyces astac... [more]
XP_002949312.11.100e-725.45Qb-SNARE, VTI1-family [Volvox carteri f. nagariens... [more]
XP_001693784.11.500e-725.81Qb-SNARE protein, VTI1-family [Chlamydomonas reinh... [more]
XP_008619157.11.500e-728.02hypothetical protein SDRG_14781 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009453NSK009453Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03160.1NO04G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579024gene_2089Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR17gene1856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03160.1NO04G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03160 ID=NO04G03160|Name=NO04G03160|organism=Nannochloropsis oceanica|type=gene|length=1386bp
ATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCG
CGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCA
CTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTA
GCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGgtgagttttct
tatcgagatcatggggagtaagtcgtaccacatccgctcctgcagcgcaa
caaaaaagagggaggtggccttaatggccggaaaggccatcttcatcaaa
caccgcaggtgcatcctggaggagagagacgaggagggtgcggctggaaa
tccactccgtcatgccccctccaccaccatgtcacacgacagGTCAAAGC
CTTGGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATC
GAGACAAGgtaaaagagtatggggtgggttcgaacaaagagggtcaacgg
gggttatggaggatctttcaaagagtttcattgtgtcgttttggtacccc
gaggtcattgccaccctcaggactgatcaacaagaacagcacctgactcc
tccacctgttactctctcgttgattagATTTCCCAGTTTCGCAACGACTT
GTGCGCTCTCCGGCGGAGCTTCGGAAGTGCCAAAGCCATTGCTGAGAAGC
GCATCCTAATCCAGCAAGCACCGGGCAGCGGCAAGCTGAAGGGTGCCACG
GAGCGTCTGATGCGgtacgtaaatgcttcgagataacatttatcccaaga
gaaaaggaagggataaggttcttcggcagtgtccgttcacgagaaaaaac
tattttttgtgcggcacgccgcttgcgcgttgtcccactcttttactgcc
ctcacatagGTCCACGGAGCAGCTAAACGATGCCAAACGGATGGTAGGCG
AGACAGAGGATGTTGgtaagaaaacaatgggagtttaggacatgagaaaa
gctagatgcgtcaacctcactgtcacacgacccgttatacgcgcacgcac
ataaagGCGATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTG
GTGCGGGCTTCCGAAAAGgtatgcattgaaaatggaatattggttttctc
gtaggcctttttcaaagatttacatatgccattgtatatcttccctcttc
tcgcctcaaatccagGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAG
ACAAGTGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTC
TCATCCTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAAC
TATGGCGTGTTGGCAAGGTACCGGAAGAATGATTGA
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protein sequence of NO04G03160.1

>NO04G03160.1-protein ID=NO04G03160.1-protein|Name=NO04G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MEDAHKHMEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRIL
AEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSF
GSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVG
DGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLI
LIIVFQFILIGIVFNYGVLARYRKND*
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Synonyms
Publications