NO04G03160.1, NO04G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03160.1
Unique NameNO04G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length681
Alignment locationchr4:864590..865975 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:864590..865975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G03160.1 vs.
Match: EWM28789.1 (qb- vti1-family [Nannochloropsis gaditana])

HSP 1 Score: 262.7 bits (670), Expect = 1.100e-66
Identity = 145/222 (65.32%), Postives = 178/222 (80.18%), Query Frame = 0
Query:    8 MEEEYYRLSRAINKGIDEL--GSKYSSVTCSPT-PAMAPSTLSRILAEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSFGSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVGDGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLILIIVFQFILIGIVFNYGVLARYRKND 227
            M+EEYYRLSRAIN+G++EL  G      + S     M PS L R++AE+D+DLAEAEGQVK LE+E++ M   DK++ R+K+ QFRNDL A+RRSF +AKA AE+ +L+Q +  SGK K   ERLM STEQL+DA+++V ETE +G+GII QME+QREQLVRASE+VQETNWFTRSARQVMNNMHLRA+RHKACLILII F  +LIGIVFNYGVLARY K +
Sbjct:    1 MQEEYYRLSRAINRGLNELTRGRLDGGGSISGGHDTMPPSRLLRLVAEIDLDLAEAEGQVKGLEIEVQDMPVKDKRMCREKVLQFRNDLKAMRRSFEAAKARAERHMLLQLSQVSGKRKNIAERLMSSTEQLHDARKVVDETEHIGEGIIYQMEAQREQLVRASEQVQETNWFTRSARQVMNNMHLRAVRHKACLILIIGFLLVLIGIVFNYGVLARYHKKN 222          
The following BLAST results are available for this feature:
BLAST of NO04G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28789.11.100e-6665.32qb- vti1-family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03160NO04G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03160.1NO04G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03160.1.cds1NO04G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03160.1.cds2NO04G03160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03160.1.cds3NO04G03160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03160.1.cds4NO04G03160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03160.1.cds5NO04G03160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03160.1.cds6NO04G03160.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03160.1 ID=NO04G03160.1|Name=NO04G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
ATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCG
CGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCA
CTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTA
GCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGGTCAAAGCCTT
GGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATCGAG
ACAAGATTTCCCAGTTTCGCAACGACTTGTGCGCTCTCCGGCGGAGCTTC
GGAAGTGCCAAAGCCATTGCTGAGAAGCGCATCCTAATCCAGCAAGCACC
GGGCAGCGGCAAGCTGAAGGGTGCCACGGAGCGTCTGATGCGGTCCACGG
AGCAGCTAAACGATGCCAAACGGATGGTAGGCGAGACAGAGGATGTTGGC
GATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTGCGGGC
TTCCGAAAAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAGACAAG
TGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTCTCATC
CTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAACTATGG
CGTGTTGGCAAGGTACCGGAAGAATGATTGA
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protein sequence of NO04G03160.1

>NO04G03160.1-protein ID=NO04G03160.1-protein|Name=NO04G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MEDAHKHMEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRIL
AEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSF
GSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVG
DGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLI
LIIVFQFILIGIVFNYGVLARYRKND*
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mRNA from alignment at chr4:864590..865975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03160.1 ID=NO04G03160.1|Name=NO04G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr4:864590..865975+ (Nannochloropsis oceanica)
ATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCG CGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCA CTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTA GCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGGTGAGTTTTCT TATCGAGATCATGGGGAGTAAGTCGTACCACATCCGCTCCTGCAGCGCAA CAAAAAAGAGGGAGGTGGCCTTAATGGCCGGAAAGGCCATCTTCATCAAA CACCGCAGGTGCATCCTGGAGGAGAGAGACGAGGAGGGTGCGGCTGGAAA TCCACTCCGTCATGCCCCCTCCACCACCATGTCACACGACAGGTCAAAGC CTTGGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATC GAGACAAGGTAAAAGAGTATGGGGTGGGTTCGAACAAAGAGGGTCAACGG GGGTTATGGAGGATCTTTCAAAGAGTTTCATTGTGTCGTTTTGGTACCCC GAGGTCATTGCCACCCTCAGGACTGATCAACAAGAACAGCACCTGACTCC TCCACCTGTTACTCTCTCGTTGATTAGATTTCCCAGTTTCGCAACGACTT GTGCGCTCTCCGGCGGAGCTTCGGAAGTGCCAAAGCCATTGCTGAGAAGC GCATCCTAATCCAGCAAGCACCGGGCAGCGGCAAGCTGAAGGGTGCCACG GAGCGTCTGATGCGGTACGTAAATGCTTCGAGATAACATTTATCCCAAGA GAAAAGGAAGGGATAAGGTTCTTCGGCAGTGTCCGTTCACGAGAAAAAAC TATTTTTTGTGCGGCACGCCGCTTGCGCGTTGTCCCACTCTTTTACTGCC CTCACATAGGTCCACGGAGCAGCTAAACGATGCCAAACGGATGGTAGGCG AGACAGAGGATGTTGGTAAGAAAACAATGGGAGTTTAGGACATGAGAAAA GCTAGATGCGTCAACCTCACTGTCACACGACCCGTTATACGCGCACGCAC ATAAAGGCGATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTG GTGCGGGCTTCCGAAAAGGTATGCATTGAAAATGGAATATTGGTTTTCTC GTAGGCCTTTTTCAAAGATTTACATATGCCATTGTATATCTTCCCTCTTC TCGCCTCAAATCCAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAG ACAAGTGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTC TCATCCTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAAC TATGGCGTGTTGGCAAGGTACCGGAAGAATGATTGA
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Coding sequence (CDS) from alignment at chr4:864590..865975+

>NO04G03160.1 ID=NO04G03160.1|Name=NO04G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr4:864590..865975+ (Nannochloropsis oceanica)
ATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCG
CGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCA
CTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTA
GCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGGTCAAAGCCTT
GGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATCGAG
ACAAGATTTCCCAGTTTCGCAACGACTTGTGCGCTCTCCGGCGGAGCTTC
GGAAGTGCCAAAGCCATTGCTGAGAAGCGCATCCTAATCCAGCAAGCACC
GGGCAGCGGCAAGCTGAAGGGTGCCACGGAGCGTCTGATGCGGTCCACGG
AGCAGCTAAACGATGCCAAACGGATGGTAGGCGAGACAGAGGATGTTGGC
GATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTGCGGGC
TTCCGAAAAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAGACAAG
TGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTCTCATC
CTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAACTATGG
CGTGTTGGCAAGGTACCGGAAGAATGATTGA
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Synonyms
Publications