NO04G03130, NO04G03130 (gene) Nannochloropsis oceanica

Overview
NameNO04G03130
Unique NameNO04G03130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr4:855809..856492 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor iiia
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:855809..856492 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2/integrase_DNA-bd
Homology
The following BLAST results are available for this feature:
BLAST of NO04G03130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03130.1NO04G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628239gene_2085Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g80gene1852Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03130.1NO04G03130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03130 ID=NO04G03130|Name=NO04G03130|organism=Nannochloropsis oceanica|type=gene|length=684bp
ATGGTCGTGCCAAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGA
TAGTGAGGACGATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGG
ATACAACGCTTGACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAG
CAAGGCAGCACCACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGA
TGAGAGGAAAATCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGC
GTGACAAGCAGAGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCT
AGCTGCGACAAGGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAA
GACGGGGCACAGCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCA
ACAAATCATTCAAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGC
TGCATGGGCCCCACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGA
CATTATCTCCCGTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAAC
AGCAATTGAATTTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACG
ATTCGAGCACTGCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCT
GCTATTGGATGTCATTATTGGGATAGTAGGGTAG
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protein sequence of NO04G03130.1

>NO04G03130.1-protein ID=NO04G03130.1-protein|Name=NO04G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MVVPKMHQQPYYHREDDSEDDHEGVEEDVREGKDTTLDMILQQLIRDVEE
QGSTTSSMRSGCGLGKDERKIGASRGVRGPRQPRDKQSIQARRQFHCHVS
SCDKAFTERRNLSQHLKTGHSDRRPFSCTVQGCNKSFKYKCVLDKHQEYC
CMGPTHSLVHLPHSLADIISRKRKQPPLEATVQQQLNLRYRRTTTLSQPT
IRALHSLDRSSALYRNLLLDVIIGIVG*
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Synonyms
Publications