NO04G03130.1, NO04G03130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03130.1
Unique NameNO04G03130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr4:855809..856492 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:855809..856492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03130.1 vs.
Match: EWM28760.1 (transcription factor iiia [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-15
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 0 
Query:   81 RQPRDKQSIQARRQFHCHVSSCDKAFTERRNLSQ-HLKTGHSDRRPFSCTVQGCNKSFKYKCVLDKHQEYCCMGPTHSLVHLPHSLADIISRK-RKQPPLEATVQQQLNLRYRRTTTLSQPTIRALHSLDRSSALYR 216
            R  RD+ SIQ R+Q+ C    C ++FTERRNL+Q H K GHSD RPF C V GC+K+FKYKCVL+KH          +  HL  S     S+  R    L + V  +    Y    T ++  +R L ++DRSS + R
Sbjct:  134 RHIRDEDSIQVRKQYRCDAPHCYRSFTERRNLAQQHRKAGHSDERPFFCIVMGCDKAFKYKCVLEKHM---------NSFHLDSSSMCRASKNIRIGEALSSEVMTEKLQEYNAPNT-NKSVLRMLQAVDRSSTIER 260
The following BLAST results are available for this feature:
BLAST of NO04G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28760.11.500e-1541.61transcription factor iiia [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03130NO04G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03130.1NO04G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03130.1.cds1NO04G03130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03130.1 ID=NO04G03130.1|Name=NO04G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGGTCGTGCCAAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGA
TAGTGAGGACGATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGG
ATACAACGCTTGACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAG
CAAGGCAGCACCACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGA
TGAGAGGAAAATCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGC
GTGACAAGCAGAGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCT
AGCTGCGACAAGGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAA
GACGGGGCACAGCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCA
ACAAATCATTCAAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGC
TGCATGGGCCCCACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGA
CATTATCTCCCGTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAAC
AGCAATTGAATTTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACG
ATTCGAGCACTGCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCT
GCTATTGGATGTCATTATTGGGATAGTAGGGTAG
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protein sequence of NO04G03130.1

>NO04G03130.1-protein ID=NO04G03130.1-protein|Name=NO04G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MVVPKMHQQPYYHREDDSEDDHEGVEEDVREGKDTTLDMILQQLIRDVEE
QGSTTSSMRSGCGLGKDERKIGASRGVRGPRQPRDKQSIQARRQFHCHVS
SCDKAFTERRNLSQHLKTGHSDRRPFSCTVQGCNKSFKYKCVLDKHQEYC
CMGPTHSLVHLPHSLADIISRKRKQPPLEATVQQQLNLRYRRTTTLSQPT
IRALHSLDRSSALYRNLLLDVIIGIVG*
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mRNA from alignment at chr4:855809..856492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03130.1 ID=NO04G03130.1|Name=NO04G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at chr4:855809..856492- (Nannochloropsis oceanica)
ATGGTCGTGCCAAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGA
TAGTGAGGACGATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGG
ATACAACGCTTGACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAG
CAAGGCAGCACCACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGA
TGAGAGGAAAATCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGC
GTGACAAGCAGAGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCT
AGCTGCGACAAGGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAA
GACGGGGCACAGCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCA
ACAAATCATTCAAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGC
TGCATGGGCCCCACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGA
CATTATCTCCCGTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAAC
AGCAATTGAATTTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACG
ATTCGAGCACTGCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCT
GCTATTGGATGTCATTATTGGGATAGTAGGGTAG
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Coding sequence (CDS) from alignment at chr4:855809..856492-

>NO04G03130.1 ID=NO04G03130.1|Name=NO04G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr4:855809..856492- (Nannochloropsis oceanica)
ATGGTCGTGCCAAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGA
TAGTGAGGACGATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGG
ATACAACGCTTGACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAG
CAAGGCAGCACCACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGA
TGAGAGGAAAATCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGC
GTGACAAGCAGAGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCT
AGCTGCGACAAGGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAA
GACGGGGCACAGCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCA
ACAAATCATTCAAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGC
TGCATGGGCCCCACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGA
CATTATCTCCCGTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAAC
AGCAATTGAATTTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACG
ATTCGAGCACTGCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCT
GCTATTGGATGTCATTATTGGGATAGTAGGGTAG
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Synonyms
Publications