NO04G02730, NO04G02730 (gene) Nannochloropsis oceanica

Overview
NameNO04G02730
Unique NameNO04G02730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr4:723908..724975 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:723908..724975 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO04G02730 vs. NCBI_GenBank
Match: EWM28650.1 (hypothetical protein Naga_100177g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-12
Identity = 61/148 (41.22%), Postives = 73/148 (49.32%), Query Frame = 0 
Query:   95 RERALALLRKMTAGGSPFNSKSSGSLYVPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPMVLS----XXXFSFASGEGQTMLGEQQPQWERTLHTLAEMARAEGKPSNTNGEELCLDGATLEGIRSPLRPTGLGSPRSVGLIG 239
            RERA+ALL  MT GGSPFNS SS  LY P                                  P +LS       FS  SGE + M G+++PQWE TLH LAEMAR +G  +  N       GA++   RS L P+ + SPRSVGLIG
Sbjct:   21 RERAVALLHSMTVGGSPFNSNSSDLLYAPSSPTLSSSPGSSSSCR------------------PPLLSPPTASTQFSVGSGE-EVMPGKRKPQWEGTLHALAEMARMDGHGNEDN------LGASVTCTRSLLTPSSMASPRSVGLIG 143
The following BLAST results are available for this feature:
BLAST of NO04G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28650.11.400e-1241.22hypothetical protein Naga_100177g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009543NSK009543Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02730.1NO04G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551701gene_2045Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100177g1gene1932Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02730.1NO04G02730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02730 ID=NO04G02730|Name=NO04G02730|organism=Nannochloropsis oceanica|type=gene|length=1068bp
ATGCGTGAGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGT
ACGCGCCTGTGTCTGCGGACCAGCCAAGCACTGGAAGAAGGCCGTGGATT
TGCTGCAGGAGATGGCCTCAAGGGGCTACCTAGTCGACCAGAGCACCTCG
AACGCCGTCATGCAGGCCTGCACTGCTAGCGTTGCCGGCGCTGCGGGTAG
TAATGCTGCGGATGAGGCAGTCGTATCATCAACAGCCGCGGGAGGGATTG
GCAGAGCTGATGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCA
CTCCTCCGCAAGATGACGGCAGGCGGCTCACCTTTCAACAGCAAAAGTAG
CGGGTCCTTGTATGTGCCTCTTCCCTCTCCTGCTGCTCCCCCTTCCACAG
TGTCTTCCTCATCTTCAAACCCGATGCCTTCTGCAGCTGCTGCAGCTTCA
ACCGCTGGGCCTTCCTTTGTCCCGATGGTGTTATCGTCCTCATCATTTTC
CTTTGCCTCAGGAGAGGGGCAGACGATGCTCGGCGAGCAACAGCCGCAGT
GGGAGCGGACCCTGCATACTCTGGCTGAGATGGCACGCGCAGAAGGAAAA
CCCTCTAATACAAACGGTGAAGAGCTTTGTTTAGATGGTGCTACCTTAGA
GGGTATCCGCAGCCCTCTCCGCCCTACAGGATTGGGCTCGCCGCGCTCGG
TGGGGTTAATTGGTAGTCCGTCTTCTACCTCTATCTCCCTATTGTCGCCC
ATGCCCTCCCCTCGTTCGCCCGCTATGGCGTTAGGGCCTGGGAGCCCGTT
CTTGAGCGCGGCAAATAATAGCAGCAGCAGTACCAGCAGCGATAGCAGCA
GCAATAGCAGCAGCAATAGCGGTGGTAGTGGTGGAACTGGACTTGGGGGG
GAGCATAACAATGGTGGGATGAGGGGCTTTGGTGGTTTTGTGCTACAGCC
TCTGGCTGATCGCGCGGCGTTGGAGGGAGGGTTGGCTACCACAACGGTGA
CGCCGGTGGGGAAGGGGGAAGGCGAAGAGGACGTTGAAACGACTTGCGGC
GGAGGGGGAGTGATCTAA
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protein sequence of NO04G02730.1

>NO04G02730.1-protein ID=NO04G02730.1-protein|Name=NO04G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MREKGLLPDSSSYNAAVRACVCGPAKHWKKAVDLLQEMASRGYLVDQSTS
NAVMQACTASVAGAAGSNAADEAVVSSTAAGGIGRADETHAAAERERALA
LLRKMTAGGSPFNSKSSGSLYVPLPSPAAPPSTVSSSSSNPMPSAAAAAS
TAGPSFVPMVLSSSSFSFASGEGQTMLGEQQPQWERTLHTLAEMARAEGK
PSNTNGEELCLDGATLEGIRSPLRPTGLGSPRSVGLIGSPSSTSISLLSP
MPSPRSPAMALGPGSPFLSAANNSSSSTSSDSSSNSSSNSGGSGGTGLGG
EHNNGGMRGFGGFVLQPLADRAALEGGLATTTVTPVGKGEGEEDVETTCG
GGGVI*
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Synonyms
Publications