NO04G02730.1, NO04G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02730.1
Unique NameNO04G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr4:723908..724975 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:723908..724975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G02730.1 vs.
Match: EWM28650.1 (hypothetical protein Naga_100177g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 97.4 bits (241), Expect = 9.200e-17
Identity = 96/229 (41.92%), Postives = 119/229 (51.97%), Query Frame = 0
Query:   95 RERALALLRKMTAGGSPFNSKSSGSLYVPLPSPAAPPSTVSSSSSNPMPSAAAAASTAGPSFVPMVLSSSSFSFASGEGQTMLGEQQPQWERTLHTLAEMARAEGKPSNTNGEELCLDGATLEGIRSPLRPTGLGSPRSVGLIGSPSSTSISLLSPMP---SPRSPAMALGPGSPFLSAANNSSSS---TSSDSSSNSSSNSGGSGGTGLGGEHNNGGMRGFGGFVLQP 318
            RERA+ALL  MT GGSPFNS SS  LY P  SP    S  SSSS  P   +   AST              FS  SGE + M G+++PQWE TLH LAEMAR +G  +  N       GA++   RS L P+ + SPRSVGLIGSPSS+S+    P P   SP SP MALGPGSP L + +    +       +    +        +     H++  + G G F LQP
Sbjct:   21 RERAVALLHSMTVGGSPFNSNSSDLLYAP-SSPTLSSSPGSSSSCRPPLLSPPTAST-------------QFSVGSGE-EVMPGKRKPQWEGTLHALAEMARMDGHGNEDN------LGASVTCTRSLLTPSSMASPRSVGLIGSPSSSSL----PGPLLLSPGSPVMALGPGSPLLKSDSGGGGAHLVLKHSTEGEGAEMKKNDDSSSYSRNHSSVDLEGSGQFSLQP 224          
The following BLAST results are available for this feature:
BLAST of NO04G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28650.19.200e-1741.92hypothetical protein Naga_100177g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02730NO04G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02730.1NO04G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02730.1.cds1NO04G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02730.1 ID=NO04G02730.1|Name=NO04G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
ATGCGTGAGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGT
ACGCGCCTGTGTCTGCGGACCAGCCAAGCACTGGAAGAAGGCCGTGGATT
TGCTGCAGGAGATGGCCTCAAGGGGCTACCTAGTCGACCAGAGCACCTCG
AACGCCGTCATGCAGGCCTGCACTGCTAGCGTTGCCGGCGCTGCGGGTAG
TAATGCTGCGGATGAGGCAGTCGTATCATCAACAGCCGCGGGAGGGATTG
GCAGAGCTGATGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCA
CTCCTCCGCAAGATGACGGCAGGCGGCTCACCTTTCAACAGCAAAAGTAG
CGGGTCCTTGTATGTGCCTCTTCCCTCTCCTGCTGCTCCCCCTTCCACAG
TGTCTTCCTCATCTTCAAACCCGATGCCTTCTGCAGCTGCTGCAGCTTCA
ACCGCTGGGCCTTCCTTTGTCCCGATGGTGTTATCGTCCTCATCATTTTC
CTTTGCCTCAGGAGAGGGGCAGACGATGCTCGGCGAGCAACAGCCGCAGT
GGGAGCGGACCCTGCATACTCTGGCTGAGATGGCACGCGCAGAAGGAAAA
CCCTCTAATACAAACGGTGAAGAGCTTTGTTTAGATGGTGCTACCTTAGA
GGGTATCCGCAGCCCTCTCCGCCCTACAGGATTGGGCTCGCCGCGCTCGG
TGGGGTTAATTGGTAGTCCGTCTTCTACCTCTATCTCCCTATTGTCGCCC
ATGCCCTCCCCTCGTTCGCCCGCTATGGCGTTAGGGCCTGGGAGCCCGTT
CTTGAGCGCGGCAAATAATAGCAGCAGCAGTACCAGCAGCGATAGCAGCA
GCAATAGCAGCAGCAATAGCGGTGGTAGTGGTGGAACTGGACTTGGGGGG
GAGCATAACAATGGTGGGATGAGGGGCTTTGGTGGTTTTGTGCTACAGCC
TCTGGCTGATCGCGCGGCGTTGGAGGGAGGGTTGGCTACCACAACGGTGA
CGCCGGTGGGGAAGGGGGAAGGCGAAGAGGACGTTGAAACGACTTGCGGC
GGAGGGGGAGTGATCTAA
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protein sequence of NO04G02730.1

>NO04G02730.1-protein ID=NO04G02730.1-protein|Name=NO04G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MREKGLLPDSSSYNAAVRACVCGPAKHWKKAVDLLQEMASRGYLVDQSTS
NAVMQACTASVAGAAGSNAADEAVVSSTAAGGIGRADETHAAAERERALA
LLRKMTAGGSPFNSKSSGSLYVPLPSPAAPPSTVSSSSSNPMPSAAAAAS
TAGPSFVPMVLSSSSFSFASGEGQTMLGEQQPQWERTLHTLAEMARAEGK
PSNTNGEELCLDGATLEGIRSPLRPTGLGSPRSVGLIGSPSSTSISLLSP
MPSPRSPAMALGPGSPFLSAANNSSSSTSSDSSSNSSSNSGGSGGTGLGG
EHNNGGMRGFGGFVLQPLADRAALEGGLATTTVTPVGKGEGEEDVETTCG
GGGVI*
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mRNA from alignment at chr4:723908..724975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02730.1 ID=NO04G02730.1|Name=NO04G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp|location=Sequence derived from alignment at chr4:723908..724975- (Nannochloropsis oceanica)
ATGCGTGAGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGT ACGCGCCTGTGTCTGCGGACCAGCCAAGCACTGGAAGAAGGCCGTGGATT TGCTGCAGGAGATGGCCTCAAGGGGCTACCTAGTCGACCAGAGCACCTCG AACGCCGTCATGCAGGCCTGCACTGCTAGCGTTGCCGGCGCTGCGGGTAG TAATGCTGCGGATGAGGCAGTCGTATCATCAACAGCCGCGGGAGGGATTG GCAGAGCTGATGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCA CTCCTCCGCAAGATGACGGCAGGCGGCTCACCTTTCAACAGCAAAAGTAG CGGGTCCTTGTATGTGCCTCTTCCCTCTCCTGCTGCTCCCCCTTCCACAG TGTCTTCCTCATCTTCAAACCCGATGCCTTCTGCAGCTGCTGCAGCTTCA ACCGCTGGGCCTTCCTTTGTCCCGATGGTGTTATCGTCCTCATCATTTTC CTTTGCCTCAGGAGAGGGGCAGACGATGCTCGGCGAGCAACAGCCGCAGT GGGAGCGGACCCTGCATACTCTGGCTGAGATGGCACGCGCAGAAGGAAAA CCCTCTAATACAAACGGTGAAGAGCTTTGTTTAGATGGTGCTACCTTAGA GGGTATCCGCAGCCCTCTCCGCCCTACAGGATTGGGCTCGCCGCGCTCGG TGGGGTTAATTGGTAGTCCGTCTTCTACCTCTATCTCCCTATTGTCGCCC ATGCCCTCCCCTCGTTCGCCCGCTATGGCGTTAGGGCCTGGGAGCCCGTT CTTGAGCGCGGCAAATAATAGCAGCAGCAGTACCAGCAGCGATAGCAGCA GCAATAGCAGCAGCAATAGCGGTGGTAGTGGTGGAACTGGACTTGGGGGG GAGCATAACAATGGTGGGATGAGGGGCTTTGGTGGTTTTGTGCTACAGCC TCTGGCTGATCGCGCGGCGTTGGAGGGAGGGTTGGCTACCACAACGGTGA CGCCGGTGGGGAAGGGGGAAGGCGAAGAGGACGTTGAAACGACTTGCGGC GGAGGGGGAGTGATCTAA
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Coding sequence (CDS) from alignment at chr4:723908..724975-

>NO04G02730.1 ID=NO04G02730.1|Name=NO04G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr4:723908..724975- (Nannochloropsis oceanica)
ATGCGTGAGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGT
ACGCGCCTGTGTCTGCGGACCAGCCAAGCACTGGAAGAAGGCCGTGGATT
TGCTGCAGGAGATGGCCTCAAGGGGCTACCTAGTCGACCAGAGCACCTCG
AACGCCGTCATGCAGGCCTGCACTGCTAGCGTTGCCGGCGCTGCGGGTAG
TAATGCTGCGGATGAGGCAGTCGTATCATCAACAGCCGCGGGAGGGATTG
GCAGAGCTGATGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCA
CTCCTCCGCAAGATGACGGCAGGCGGCTCACCTTTCAACAGCAAAAGTAG
CGGGTCCTTGTATGTGCCTCTTCCCTCTCCTGCTGCTCCCCCTTCCACAG
TGTCTTCCTCATCTTCAAACCCGATGCCTTCTGCAGCTGCTGCAGCTTCA
ACCGCTGGGCCTTCCTTTGTCCCGATGGTGTTATCGTCCTCATCATTTTC
CTTTGCCTCAGGAGAGGGGCAGACGATGCTCGGCGAGCAACAGCCGCAGT
GGGAGCGGACCCTGCATACTCTGGCTGAGATGGCACGCGCAGAAGGAAAA
CCCTCTAATACAAACGGTGAAGAGCTTTGTTTAGATGGTGCTACCTTAGA
GGGTATCCGCAGCCCTCTCCGCCCTACAGGATTGGGCTCGCCGCGCTCGG
TGGGGTTAATTGGTAGTCCGTCTTCTACCTCTATCTCCCTATTGTCGCCC
ATGCCCTCCCCTCGTTCGCCCGCTATGGCGTTAGGGCCTGGGAGCCCGTT
CTTGAGCGCGGCAAATAATAGCAGCAGCAGTACCAGCAGCGATAGCAGCA
GCAATAGCAGCAGCAATAGCGGTGGTAGTGGTGGAACTGGACTTGGGGGG
GAGCATAACAATGGTGGGATGAGGGGCTTTGGTGGTTTTGTGCTACAGCC
TCTGGCTGATCGCGCGGCGTTGGAGGGAGGGTTGGCTACCACAACGGTGA
CGCCGGTGGGGAAGGGGGAAGGCGAAGAGGACGTTGAAACGACTTGCGGC
GGAGGGGGAGTGATCTAA
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Synonyms
Publications