NO04G02700, NO04G02700 (gene) Nannochloropsis oceanica

Overview
NameNO04G02700
Unique NameNO04G02700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1907
Alignment locationchr4:716964..718870 -

Link to JBrowse

Properties
Property NameValue
DescriptionCharged multivesicular body protein 2a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:716964..718870 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: EWM28644.1 (charged multivesicular body protein 2a [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 9.000e-30
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0 
Query:   44 RVMFGRRK-TAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            + MFG++K T KEQLRETKKEIRHNERDMDRELQNL REEAKLI DIKK AA+ QHG LK MAKNLVQLR QK++L+TMKAT+TGVGYKAS M SQ
Sbjct:   36 KAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQ 131
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: XP_012195266.1 (hypothetical protein SPRG_19070 [Saprolegnia parasitica CBS 223.65] >KDO34232.1 hypothetical protein SPRG_19070 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-13
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 0 
Query:   51 KTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            KTA+EQ RE K+EI H +RD++RE   L R+E +LI+DIKKAA  G     K +AK LVQ+R QKE+L+ MK ++ G+G +AS M +Q
Sbjct:   10 KTAREQAREAKREIAHGQRDLEREKMVLERQEKQLILDIKKAAKDGNQAGTKILAKQLVQVRAQKEKLMVMKVSLGGIGMQASAMAAQ 97
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BLAST of NO04G02700 vs. NCBI_GenBank
Match: OQR84767.1 (SNF7 family protein [Achlya hypogyna])

HSP 1 Score: 80.5 bits (197), Expect = 8.500e-12
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0 
Query:   47 FGR-RKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            FG+ +KT +EQ RE K+EI H +RD++RE   L R+E  L++DIK+AA  G     K +AK LVQ+R QK++L  MKA + G+  +ASTM +Q
Sbjct:    4 FGKPQKTPREQAREAKREIAHGQRDLEREKAALERQEKTLVLDIKRAAKDGNAAGTKILAKQLVQVRQQKDKLSVMKANLGGIAMQASTMAAQ 96
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: XP_002670746.1 (predicted protein [Naegleria gruberi] >EFC38002.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 77.4 bits (189), Expect = 7.200e-11
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            +F + KT +E L+E KKE+R   RDMDRE   L  EE KL + +K+A   G     KT+AK +V LR Q+ER+  MK T+  V +KA++MQ+Q
Sbjct:    3 LFEKAKTNQELLKEQKKELRSGTRDMDREANKLKTEEQKLQIQVKRALEKGDQTTAKTLAKQIVNLRKQQERMGKMKQTMNTVQFKATSMQAQ 95
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: XP_003375827.1 (charged multivesicular body protein 2a [Trichinella spiralis] >EFV58928.1 charged multivesicular body protein 2a [Trichinella spiralis] >KRX19227.1 Charged multivesicular body protein 2a [Trichinella nelsoni] >KRY43201.1 Charged multivesicular body protein 2a [Trichinella spiralis])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            +FGRRKT +E LR+ ++ +    RD+DRE  +L  +E K+I+DIKK A +GQ   +K MAK+LV+ R   ++ + M+A +  V  K  T++SQ
Sbjct:    6 LFGRRKTPQEMLRQNQRALNRAMRDLDREKMHLENQEKKIIIDIKKMAKAGQMDAVKVMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSQ 98
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: KRX45580.1 (Charged multivesicular body protein 2a [Trichinella murrelli] >KRX59089.1 Charged multivesicular body protein 2a [Trichinella sp. T9] >KRX78896.1 Charged multivesicular body protein 2a [Trichinella sp. T6] >KRY01734.1 Charged multivesicular body protein 2a [Trichinella pseudospiralis] >KRY19035.1 Charged multivesicular body protein 2a [Trichinella patagoniensis] >KRY57920.1 Charged multivesicular body protein 2a [Trichinella britovi] >KRY79788.1 Charged multivesicular body protein 2a [Trichinella pseudospiralis] >KRY86569.1 Charged multivesicular body protein 2a [Trichinella pseudospiralis] >KRZ33478.1 Charged multivesicular body protein 2a [Trichinella pseudospiralis] >KRZ50569.1 Charged multivesicular body protein 2a [Trichinella nativa] >OUC41417.1 SNF7 family protein [Trichinella nativa])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            +FGRRKT +E LR+ ++ +    RD+DRE  +L  +E K+I+DIKK A +GQ   +K MAK+LV+ R   ++ + M+A +  V  K  T++SQ
Sbjct:    6 LFGRRKTPQEMLRQNQRALNRAMRDLDREKMHLENQEKKIIIDIKKMAKAGQMDAVKVMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSQ 98
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: KRZ14263.1 (Charged multivesicular body protein 2a [Trichinella zimbabwensis] >KRZ80888.1 Charged multivesicular body protein 2a [Trichinella papuae])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            +FGRRKT +E LR+ ++ +    RD+DRE  +L  +E K+I+DIKK A +GQ   +K MAK+LV+ R   ++ + M+A +  V  K  T++SQ
Sbjct:    6 LFGRRKTPQEMLRQNQRALNRAMRDLDREKMHLENQEKKIIIDIKKMAKAGQMDAVKVMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSQ 98
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: KRZ41259.1 (Charged multivesicular body protein 2a, partial [Trichinella pseudospiralis])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            +FGRRKT +E LR+ ++ +    RD+DRE  +L  +E K+I+DIKK A +GQ   +K MAK+LV+ R   ++ + M+A +  V  K  T++SQ
Sbjct:    8 LFGRRKTPQEMLRQNQRALNRAMRDLDREKMHLENQEKKIIIDIKKMAKAGQMDAVKVMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSQ 100
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: KRZ89398.1 (Charged multivesicular body protein 2a [Trichinella sp. T8])

HSP 1 Score: 75.5 bits (184), Expect = 2.700e-10
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQ 139
            +FGRRKT +E LR+ ++ +    RD+DRE  +L  +E K+I+DIKK A +GQ   +K MAK+LV+ R   ++ + M+A +  V  K  T++SQ
Sbjct:    6 LFGRRKTPQEMLRQNQRALNRAMRDLDREKMHLENQEKKIIIDIKKMAKAGQMDAVKVMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSQ 98
[Close]
BLAST of NO04G02700 vs. NCBI_GenBank
Match: XP_017238039.1 (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Daucus carota subsp. sativus] >KZN03197.1 hypothetical protein DCAR_011953 [Daucus carota subsp. sativus])

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-10
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:   46 MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQS 138
            +FG+RKT  E LRE K+ I  + R+++RE Q L  +E KLIVDIKK A  GQ G +K MAK+L++ R Q E+   +K+ + GV  +  T++S
Sbjct:    4 IFGKRKTPAELLRENKRMIDKSIREIERERQGLQNQEKKLIVDIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKS 95
The following BLAST results are available for this feature:
BLAST of NO04G02700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28644.19.000e-3079.17charged multivesicular body protein 2a [Nannochlor... [more]
XP_012195266.11.200e-1352.27hypothetical protein SPRG_19070 [Saprolegnia paras... [more]
OQR84767.18.500e-1248.39SNF7 family protein [Achlya hypogyna][more]
XP_002670746.17.200e-1146.24predicted protein [Naegleria gruberi] >EFC38002.1 ... [more]
XP_003375827.12.700e-1041.94charged multivesicular body protein 2a [Trichinell... [more]
KRX45580.12.700e-1041.94Charged multivesicular body protein 2a [Trichinell... [more]
KRZ14263.12.700e-1041.94Charged multivesicular body protein 2a [Trichinell... [more]
KRZ41259.12.700e-1041.94Charged multivesicular body protein 2a, partial [T... [more]
KRZ89398.12.700e-1041.94Charged multivesicular body protein 2a [Trichinell... [more]
XP_017238039.13.600e-1045.65PREDICTED: vacuolar protein sorting-associated pro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009548NSK009548Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02700.1NO04G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578838gene_2042Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100177g5gene1936Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02700.1NO04G02700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02700 ID=NO04G02700|Name=NO04G02700|organism=Nannochloropsis oceanica|type=gene|length=1907bp
TTTTGTATTTTTCCCTGACAGAAATTGACGGTTCGATGTAGTTAACGCTC
GTAAACCCAGTTTTCGCTTCACTCCCACAATCAGGTCAATAAAACCGCAA
AGAGTACATTTCACTTCCTACAAATCAAAGCTGTTATTGATACCATCGTT
CATTCCCTACCAAAAAGCCTCGAGGGCCAATGCCCGAGCTTCAAGGCCCG
TGGTTTGGTCAACGGCCGCAGATGGCGTATGGAAATGCTGCTTTCCGCAC
TGATATTCACAGTACAGCACACATCATTCAAAATTTTTCATAGCCTACCA
ATCTCCGGTGGAAGCCCTGGGCGGATTCGTGGCCTAGTCAAGGCAGCCCA
GTTTTTTTTCTTCTCGTCATCATGCCCTACCCTTGCTTCCTCTCAACTCA
TCGCCTTTTCCCGTCTCCTTCCGCCCAGCTCTTGTTTCACTTACATCCCG
TTTCCCCTTCGCAACCACAGCCCGCATCGACATCCTTTCATTTCTTCCCA
AGAGTCATGTTTGGCCGCCGAAAAACCGCCAAAGAGCAGCTCAGAGAGAC
AAAGAAAGAGATCAGACACAACGAGCGGGACATGGACCGCGAGCTACAAA
ACCTTACGCGGGAAGAAGCCAAGCTCATCGTCGATATCAAGAAAGCGGCA
GCCAGCGGCCAACATGGGATACTCAAGACCATGGCGAAGAATCTCGTGCA
GTTGCGGACACAAAAAGAAAGGCTTGTGACGATGAAGGCGACCGTCACAG
GCGTTGGGTACAAGGCGTCCACGATGCAGTCGCAGATGGCCGTTGGCCAG
GTCATGGGGACTATGGCGGGGgtaagtagaagcagaggaatttcggagtg
ataggagaggtcgttgaccatgggatagatcagatgcaggcacgggaagt
tactacttaggatttcctgacaggcagtggcactgcctcacgtaaattgc
gacgtgatcatttcaccctctattgccgtaatcttccctgtcctttatac
cgacatgtatggggcgatagtggatgcctcgaaacagttctgaaagcgca
ccggctacatgggatggcacatgggcacactcaccctttctcactccaac
taaattacctatgtatccgcacaaaattttacactgacagGTGATGGGTC
AGATGAACGAGAAAATGAACGCTAAAGATACCGCTACAGTGATGGCGGAG
TTTACGAAGCAAAACGAATACATGAATTTGAAAGAGGATATGCTTGACGA
CGCACTGATGGACGCGgtagggagggaaggaggcaggagggagggaggga
ggaagggatggggggatgggatgggatgggaatggaatggatgggatggc
aagtagagagggcagaactgaagggtatatatgcaagttctgaaagcgca
ctgaattgattgagtacataacccattaacattttgtcattcaaaggcgc
aggagagggatggatggagagagcaggtagagcgttgctctaggaggaat
aggttttctctttttcaaagcacgtctcctcacattcctgttttcaagcg
cctaatcaatcttttacaccgtgtcccgtccattctctatattaaaacac
agTTCGACGGCGACGACGTGGAGGAGGAGGCCGACTCGGTGGTCAATCAA
GTGCTAACTGAAATCGGGTTGGACGTGGGCGCCAGAATGACAGACGCCCC
AACAGGCAAGCTTTCTCGACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGG
AAAAAGCAGCTATGGAGACTTTGGAAAAGCTCTTGCCAAGTATGCCATAG
ATGGTTGAAGAGGAGAAGGGAAGAGGACGGGGGAGGTTGTGGAAATGAAG
TTTACGGGACGAAAGAAGAAAATTGTACAGGATGACAAGAGACTGGAAGA
AGAAGGT
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protein sequence of NO04G02700.1

>NO04G02700.1-protein ID=NO04G02700.1-protein|Name=NO04G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MPYPCFLSTHRLFPSPSAQLLFHLHPVSPSQPQPASTSFHFFPRVMFGRR
KTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGI
LKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQMAVGQVMGTMAG
VMGQMNEKMNAKDTATVMAEFTKQNEYMNLKEDMLDDALMDAFDGDDVEE
EADSVVNQVLTEIGLDVGARMTDAPTGKLSRQQEKEAESAEEKAAMETLE
KLLPSMP*
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Synonyms
Publications