NO04G02700.1, NO04G02700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02700.1
Unique NameNO04G02700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1252
Alignment locationchr4:716964..718870 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:716964..718870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G02700.1 vs.
Match: EWM28644.1 (charged multivesicular body protein 2a [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 1.000e-49
Identity = 113/150 (75.33%), Postives = 126/150 (84.00%), Query Frame = 0 
Query:   44 RVMFGRRK-TAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQMAVGQVMGTMAGVMGQMNEKMNAKDTATVMAEFTKQNEYMNLKEDMLDDALMDA 193
            + MFG++K T KEQLRETKKEIRHNERDMDRELQNL REEAKLI DIKK AA+ QHG LK MAKNLVQLR QK++L+TMKAT+TGVGYKAS M SQ AVGQ M  M GVMG MNE M+A  T+ VM EF +QNEYMN+KED+LDDALMDA
Sbjct:   36 KAMFGQKKLTPKEQLRETKKEIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKATMTGVGYKASLMHSQAAVGQAMSRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDA 185
The following BLAST results are available for this feature:
BLAST of NO04G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28644.11.000e-4975.33charged multivesicular body protein 2a [Nannochlor... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02700NO04G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02700.1NO04G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02700.1.cds1NO04G02700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02700.1.cds2NO04G02700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02700.1.cds3NO04G02700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02700.1 ID=NO04G02700.1|Name=NO04G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp
TTTTGTATTTTTCCCTGACAGAAATTGACGGTTCGATGTAGTTAACGCTC
GTAAACCCAGTTTTCGCTTCACTCCCACAATCAGGTCAATAAAACCGCAA
AGAGTACATTTCACTTCCTACAAATCAAAGCTGTTATTGATACCATCGTT
CATTCCCTACCAAAAAGCCTCGAGGGCCAATGCCCGAGCTTCAAGGCCCG
TGGTTTGGTCAACGGCCGCAGATGGCGTATGGAAATGCTGCTTTCCGCAC
TGATATTCACAGTACAGCACACATCATTCAAAATTTTTCATAGCCTACCA
ATCTCCGGTGGAAGCCCTGGGCGGATTCGTGGCCTAGTCAAGGCAGCCCA
GTTTTTTTTCTTCTCGTCATCATGCCCTACCCTTGCTTCCTCTCAACTCA
TCGCCTTTTCCCGTCTCCTTCCGCCCAGCTCTTGTTTCACTTACATCCCG
TTTCCCCTTCGCAACCACAGCCCGCATCGACATCCTTTCATTTCTTCCCA
AGAGTCATGTTTGGCCGCCGAAAAACCGCCAAAGAGCAGCTCAGAGAGAC
AAAGAAAGAGATCAGACACAACGAGCGGGACATGGACCGCGAGCTACAAA
ACCTTACGCGGGAAGAAGCCAAGCTCATCGTCGATATCAAGAAAGCGGCA
GCCAGCGGCCAACATGGGATACTCAAGACCATGGCGAAGAATCTCGTGCA
GTTGCGGACACAAAAAGAAAGGCTTGTGACGATGAAGGCGACCGTCACAG
GCGTTGGGTACAAGGCGTCCACGATGCAGTCGCAGATGGCCGTTGGCCAG
GTCATGGGGACTATGGCGGGGGTGATGGGTCAGATGAACGAGAAAATGAA
CGCTAAAGATACCGCTACAGTGATGGCGGAGTTTACGAAGCAAAACGAAT
ACATGAATTTGAAAGAGGATATGCTTGACGACGCACTGATGGACGCGTTC
GACGGCGACGACGTGGAGGAGGAGGCCGACTCGGTGGTCAATCAAGTGCT
AACTGAAATCGGGTTGGACGTGGGCGCCAGAATGACAGACGCCCCAACAG
GCAAGCTTTCTCGACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGGAAAAA
GCAGCTATGGAGACTTTGGAAAAGCTCTTGCCAAGTATGCCATAGATGGT
TGAAGAGGAGAAGGGAAGAGGACGGGGGAGGTTGTGGAAATGAAGTTTAC
GGGACGAAAGAAGAAAATTGTACAGGATGACAAGAGACTGGAAGAAGAAG
GT
back to top

protein sequence of NO04G02700.1

>NO04G02700.1-protein ID=NO04G02700.1-protein|Name=NO04G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MPYPCFLSTHRLFPSPSAQLLFHLHPVSPSQPQPASTSFHFFPRVMFGRR
KTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAASGQHGI
LKTMAKNLVQLRTQKERLVTMKATVTGVGYKASTMQSQMAVGQVMGTMAG
VMGQMNEKMNAKDTATVMAEFTKQNEYMNLKEDMLDDALMDAFDGDDVEE
EADSVVNQVLTEIGLDVGARMTDAPTGKLSRQQEKEAESAEEKAAMETLE
KLLPSMP*
back to top

mRNA from alignment at chr4:716964..718870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02700.1 ID=NO04G02700.1|Name=NO04G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp|location=Sequence derived from alignment at chr4:716964..718870- (Nannochloropsis oceanica)
TTTTGTATTTTTCCCTGACAGAAATTGACGGTTCGATGTAGTTAACGCTC
GTAAACCCAGTTTTCGCTTCACTCCCACAATCAGGTCAATAAAACCGCAA
AGAGTACATTTCACTTCCTACAAATCAAAGCTGTTATTGATACCATCGTT
CATTCCCTACCAAAAAGCCTCGAGGGCCAATGCCCGAGCTTCAAGGCCCG
TGGTTTGGTCAACGGCCGCAGATGGCGTATGGAAATGCTGCTTTCCGCAC
TGATATTCACAGTACAGCACACATCATTCAAAATTTTTCATAGCCTACCA
ATCTCCGGTGGAAGCCCTGGGCGGATTCGTGGCCTAGTCAAGGCAGCCCA
GTTTTTTTTCTTCTCGTCATCATGCCCTACCCTTGCTTCCTCTCAACTCA
TCGCCTTTTCCCGTCTCCTTCCGCCCAGCTCTTGTTTCACTTACATCCCG
TTTCCCCTTCGCAACCACAGCCCGCATCGACATCCTTTCATTTCTTCCCA
AGAGTCATGTTTGGCCGCCGAAAAACCGCCAAAGAGCAGCTCAGAGAGAC
AAAGAAAGAGATCAGACACAACGAGCGGGACATGGACCGCGAGCTACAAA
ACCTTACGCGGGAAGAAGCCAAGCTCATCGTCGATATCAAGAAAGCGGCA
GCCAGCGGCCAACATGGGATACTCAAGACCATGGCGAAGAATCTCGTGCA
GTTGCGGACACAAAAAGAAAGGCTTGTGACGATGAAGGCGACCGTCACAG
GCGTTGGGTACAAGGCGTCCACGATGCAGTCGCAGATGGCCGTTGGCCAG
GTCATGGGGACTATGGCGGGGGTAAGTAGAAGCAGAGGAATTTCGGAGTG
ATAGGAGAGGTCGTTGACCATGGGATAGATCAGATGCAGGCACGGGAAGT
TACTACTTAGGATTTCCTGACAGGCAGTGGCACTGCCTCACGTAAATTGC
GACGTGATCATTTCACCCTCTATTGCCGTAATCTTCCCTGTCCTTTATAC
CGACATGTATGGGGCGATAGTGGATGCCTCGAAACAGTTCTGAAAGCGCA
CCGGCTACATGGGATGGCACATGGGCACACTCACCCTTTCTCACTCCAAC
TAAATTACCTATGTATCCGCACAAAATTTTACACTGACAGGTGATGGGTC
AGATGAACGAGAAAATGAACGCTAAAGATACCGCTACAGTGATGGCGGAG
TTTACGAAGCAAAACGAATACATGAATTTGAAAGAGGATATGCTTGACGA
CGCACTGATGGACGCGGTAGGGAGGGAAGGAGGCAGGAGGGAGGGAGGGA
GGAAGGGATGGGGGGATGGGATGGGATGGGAATGGAATGGATGGGATGGC
AAGTAGAGAGGGCAGAACTGAAGGGTATATATGCAAGTTCTGAAAGCGCA
CTGAATTGATTGAGTACATAACCCATTAACATTTTGTCATTCAAAGGCGC
AGGAGAGGGATGGATGGAGAGAGCAGGTAGAGCGTTGCTCTAGGAGGAAT
AGGTTTTCTCTTTTTCAAAGCACGTCTCCTCACATTCCTGTTTTCAAGCG
CCTAATCAATCTTTTACACCGTGTCCCGTCCATTCTCTATATTAAAACAC
AGTTCGACGGCGACGACGTGGAGGAGGAGGCCGACTCGGTGGTCAATCAA
GTGCTAACTGAAATCGGGTTGGACGTGGGCGCCAGAATGACAGACGCCCC
AACAGGCAAGCTTTCTCGACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGG
AAAAAGCAGCTATGGAGACTTTGGAAAAGCTCTTGCCAAGTATGCCATAG
ATGGTTGAAGAGGAGAAGGGAAGAGGACGGGGGAGGTTGTGGAAATGAAG
TTTACGGGACGAAAGAAGAAAATTGTACAGGATGACAAGAGACTGGAAGA
AGAAGGT
back to top

Coding sequence (CDS) from alignment at chr4:716964..718870-

>NO04G02700.1 ID=NO04G02700.1|Name=NO04G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr4:716964..718870- (Nannochloropsis oceanica)
ATGCCCTACCCTTGCTTCCTCTCAACTCATCGCCTTTTCCCGTCTCCTTC
CGCCCAGCTCTTGTTTCACTTACATCCCGTTTCCCCTTCGCAACCACAGC
CCGCATCGACATCCTTTCATTTCTTCCCAAGAGTCATGTTTGGCCGCCGA
AAAACCGCCAAAGAGCAGCTCAGAGAGACAAAGAAAGAGATCAGACACAA
CGAGCGGGACATGGACCGCGAGCTACAAAACCTTACGCGGGAAGAAGCCA
AGCTCATCGTCGATATCAAGAAAGCGGCAGCCAGCGGCCAACATGGGATA
CTCAAGACCATGGCGAAGAATCTCGTGCAGTTGCGGACACAAAAAGAAAG
GCTTGTGACGATGAAGGCGACCGTCACAGGCGTTGGGTACAAGGCGTCCA
CGATGCAGTCGCAGATGGCCGTTGGCCAGGTCATGGGGACTATGGCGGGG
GTGATGGGTCAGATGAACGAGAAAATGAACGCTAAAGATACCGCTACAGT
GATGGCGGAGTTTACGAAGCAAAACGAATACATGAATTTGAAAGAGGATA
TGCTTGACGACGCACTGATGGACGCGTTCGACGGCGACGACGTGGAGGAG
GAGGCCGACTCGGTGGTCAATCAAGTGCTAACTGAAATCGGGTTGGACGT
GGGCGCCAGAATGACAGACGCCCCAACAGGCAAGCTTTCTCGACAGCAAG
AGAAAGAAGCAGAGTCGGCGGAGGAAAAAGCAGCTATGGAGACTTTGGAA
AAGCTCTTGCCAAGTATGCCATAG
back to top
Synonyms
Publications