NO04G02610, NO04G02610 (gene) Nannochloropsis oceanica

Overview
NameNO04G02610
Unique NameNO04G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2504
Alignment locationchr4:695782..698285 +

Link to JBrowse

Properties
Property NameValue
DescriptionUPF0662 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:695782..698285 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018810UPF0662
Homology
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BLAST of NO04G02610 vs. NCBI_GenBank
Match: EWM28651.1 (Uncharacterized protein Naga_100177g17 [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 5.000e-83
Identity = 160/199 (80.40%), Postives = 174/199 (87.44%), Query Frame = 0 
Query:    1 MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALDELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQAKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDKPDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGN-IPEGQAV 199
            MPF+DTLRHALEQLRA  KA +P HKVG+EE+TVDPAL+GVE+EL+IALDELKAFKNED+NK LHAKDLREPREILGHVDSLYHEGKFCVEGV+GIPHGQAKLA MLAEGHELL ECLERVDFY VSEPLRPLQNKLDNVQHAL +L+DK DLHP DLLPLRRKLAEID  YHE +F     + AG  G + I EGQAV
Sbjct:   21 MPFVDTLRHALEQLRAKFKADVPPHKVGDEELTVDPALQGVEKELRIALDELKAFKNEDVNKSLHAKDLREPREILGHVDSLYHEGKFCVEGVKGIPHGQAKLADMLAEGHELLHECLERVDFYTVSEPLRPLQNKLDNVQHALESLQDKEDLHPRDLLPLRRKLAEIDAHYHEGRF-----ESAGREGEHVIAEGQAV 214
The following BLAST results are available for this feature:
BLAST of NO04G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28651.15.000e-8380.40Uncharacterized protein Naga_100177g17 [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009557NSK009557Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02610.1NO04G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G02610.2NO04G02610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668760gene_2031Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100177g17gene1946Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02610.1NO04G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G02610.2NO04G02610.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02610 ID=NO04G02610|Name=NO04G02610|organism=Nannochloropsis oceanica|type=gene|length=2504bp
CATGCCCATATGTTGTTCTGTTCTGTTTTGCGCAGTGCAAGGTCTTGAAT
CTGTGCTTTGGACTGCGTTCGTGTGTGCATGGCTGGACCAGCCAAGACCC
CAAGTCTGCTTGAAAACCTCCTCCCCCTCCTCACCCCATATTTCCAGCAG
GGACAGTACCTCCTGCCCTATCCTTTTCTGGTACCACATGGCAGACCACA
TCGCGCTCCCAGAAACTAGTACTTTGCTCACTCTCCCCATCTTCACCCCA
CATCTTCACAGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACA
GAGATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGC
TACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGA
CCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGgtgagagaggagcta
ggagggccggtcgggatgaagtcatgtgtggggagcgttgcgtgtccaag
tgtgcgggagagggaggttgatagatttacaggtgtctctttgtgcgccg
aggttttaatgtctatggaggtgtattctaatttcagcgcacatcatttc
tcacaatctgtatccctaccttcttcactctctccctgtttctctctatc
cccctccctacctaccacagCTCCAGATCGCCTTGGACGAGTTAAAGGCT
TTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAAGGACCTGCGAGA
GCCACGAGAGATTCTGGGGCATGTGgtgcgttgtttgcttaagtctcttt
cttcggccctctcgtcaccacttgtccctctacaaatccctcaaatcccc
cttctcaatcatcatgctctcccttctctccttcccctcctgtcatacca
aaatgcagGACTCCCTGTACCACGAAGGCAAATTCTGTGTCGAAGGCGTG
GAGGGGATTCCCCACGGTCAAGCCAAGCTCGCTTCCATGCTCGCAGAGGG
CCATGAGCTTTTGCGGGAGTGCTTGGAACGGGTGGATTTCTACAAGgtac
gactttgttactgctttcctccgcttccctttctccctccctccttccgt
cgctcctttcctttctgtattcctcccttcctcccatgatcaagtaaatc
ctcttccttccttcctcccctcctcctctcccaagGTCTCCGAGCCCCTC
CGTCCGCTTCAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCT
CAAAGACAAACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAA
AGCTGGCTGAAATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCG
AGTCCCCAAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGC
GGTGAGCTTGGATGGAAAAAATGGGGCTTACGGAGGGAGGAGAGAAGCGG
AGGGGGAGAAGGGGGAAACAGTCGGGAATTCCGCTTTATCTCCTTTGTTT
GGATTGGCTGAGCTTTGCATTTTCTGACTGACCATTGCCCTTTCCCTTCT
TGCGGCTCTCTTCTTTTCTCGACTTTTCCCTCCACCAAACCACCATAGGT
CTTGGCAACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGT
TCAAGACGGACTTTTACAAGgtaagaacatataagaacatttgcccgttg
gccgagctctcgccgattgcctcctcctcagatgcatggagaggtgtcaa
gatgtgtgtcccgaaagacaagctcacacatcctctcccccccattccgc
atatccatggtcatttctgcgtctgatttctaccgctttcagtgattttc
atctcccttcccccacccccatccccgccccttctcccctttctccctag
GTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCGAGTCCATCAAAAT
GCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAGGACTTGA
TTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGAATGGAAGGAGGGC
AAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGTGAG
TAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAGGTGCAGAATAAAA
TGTGAGGTGGCTGTGATGGAGGGAGGGGGGAAGAAGAGGGGGGAGAGGGA
GATGTAGTGTGTATTGATGGAGCTTATGGAGGGAGCGAGAGAGACAGAGA
GAGACAGAACGGGTTAGAGAGAGAGAAATGTACAGGGAGGAGAGAGAGTG
AGTGTGAATTTGTATTTGGTTGTGTGGAAGCGAAATTCCAAAAGACGTGA
TGACTCTCTTTCTGCCTTCGTATGTTTCCTTCGCGGACTCGTTATTGCGG
CGTTTTTGGTGCTGGTGCTGTCTGGAGAGAGAGAGAGAAGATAGGGCACC
CATATTTCGAAGGAATCCAAGATAAACTAATATGCATTTGGGGGGGAGAG
GGGG
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protein sequence of NO04G02610.1

>NO04G02610.1-protein ID=NO04G02610.1-protein|Name=NO04G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALD
ELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQ
AKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDK
PDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGNIPEGQAVLA
TALANAHETLRALLFKTDFYKVDEALFSIHDRIESIKMRLESLNRKENVA
EKDLISLRDRLQRCDEEWKEGKIVVEGGRVPGGQAVVSKLLYEAHNLMSE
VQNKM*
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protein sequence of NO04G02610.2

>NO04G02610.2-protein ID=NO04G02610.2-protein|Name=NO04G02610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALD
ELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQ
AKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDK
PDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGNIPEGQAVSL
DGKNGAYGGRREAEGEKGETVGNSALSPLFGLAELCIF*
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Synonyms
Publications