NO04G02610.2, NO04G02610.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02610.2
Unique NameNO04G02610.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1767
Alignment locationchr4:695782..698285 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:695782..698285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02610.2 vs.
Match: EWM28651.1 (Uncharacterized protein Naga_100177g17 [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 5.000e-83
Identity = 160/199 (80.40%), Postives = 174/199 (87.44%), Query Frame = 0 
Query:    1 MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALDELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQAKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDKPDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGN-IPEGQAV 199
            MPF+DTLRHALEQLRA  KA +P HKVG+EE+TVDPAL+GVE+EL+IALDELKAFKNED+NK LHAKDLREPREILGHVDSLYHEGKFCVEGV+GIPHGQAKLA MLAEGHELL ECLERVDFY VSEPLRPLQNKLDNVQHAL +L+DK DLHP DLLPLRRKLAEID  YHE +F     + AG  G + I EGQAV
Sbjct:   21 MPFVDTLRHALEQLRAKFKADVPPHKVGDEELTVDPALQGVEKELRIALDELKAFKNEDVNKSLHAKDLREPREILGHVDSLYHEGKFCVEGVKGIPHGQAKLADMLAEGHELLHECLERVDFYTVSEPLRPLQNKLDNVQHALESLQDKEDLHPRDLLPLRRKLAEIDAHYHEGRF-----ESAGREGEHVIAEGQAV 214
The following BLAST results are available for this feature:
BLAST of NO04G02610.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28651.15.000e-8380.40Uncharacterized protein Naga_100177g17 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02610NO04G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02610.2NO04G02610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02610.2.cds1NO04G02610.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.2.cds2NO04G02610.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.2.cds3NO04G02610.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.2.cds4NO04G02610.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02610.2 ID=NO04G02610.2|Name=NO04G02610.2|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
CATGCCCATATGTTGTTCTGTTCTGTTTTGCGCAGTGCAAGGTCTTGAAT
CTGTGCTTTGGACTGCGTTCGTGTGTGCATGGCTGGACCAGCCAAGACCC
CAAGTCTGCTTGAAAACCTCCTCCCCCTCCTCACCCCATATTTCCAGCAG
GGACAGTACCTCCTGCCCTATCCTTTTCTGGTACCACATGGCAGACCACA
TCGCGCTCCCAGAAACTAGTACTTTGCTCACTCTCCCCATCTTCACCCCA
CATCTTCACAGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACA
GAGATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGC
TACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGA
CCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTG
GACGAGTTAAAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGC
CAAGGACCTGCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGT
ACCACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGT
CAAGCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGA
GTGCTTGGAACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGC
TTCAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGAC
AAACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGC
TGAAATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCC
AAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTGAGC
TTGGATGGAAAAAATGGGGCTTACGGAGGGAGGAGAGAAGCGGAGGGGGA
GAAGGGGGAAACAGTCGGGAATTCCGCTTTATCTCCTTTGTTTGGATTGG
CTGAGCTTTGCATTTTCTGACTGACCATTGCCCTTTCCCTTCTTGCGGCT
CTCTTCTTTTCTCGACTTTTCCCTCCACCAAACCACCATAGGTCTTGGCA
ACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAAGAC
GGACTTTTACAAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCG
AGTCCATCAAAATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCC
GAGAAGGACTTGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGA
ATGGAAGGAGGGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGC
AGGCGGTGGTGAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAG
GTGCAGAATAAAATGTGAGGTGGCTGTGATGGAGGGAGGGGGGAAGAAGA
GGGGGGAGAGGGAGATGTAGTGTGTATTGATGGAGCTTATGGAGGGAGCG
AGAGAGACAGAGAGAGACAGAACGGGTTAGAGAGAGAGAAATGTACAGGG
AGGAGAGAGAGTGAGTGTGAATTTGTATTTGGTTGTGTGGAAGCGAAATT
CCAAAAGACGTGATGACTCTCTTTCTGCCTTCGTATGTTTCCTTCGCGGA
CTCGTTATTGCGGCGTTTTTGGTGCTGGTGCTGTCTGGAGAGAGAGAGAG
AAGATAGGGCACCCATATTTCGAAGGAATCCAAGATAAACTAATATGCAT
TTGGGGGGGAGAGGGGG
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protein sequence of NO04G02610.2

>NO04G02610.2-protein ID=NO04G02610.2-protein|Name=NO04G02610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALD
ELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQ
AKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDK
PDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGNIPEGQAVSL
DGKNGAYGGRREAEGEKGETVGNSALSPLFGLAELCIF*
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mRNA from alignment at chr4:695782..698285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02610.2 ID=NO04G02610.2|Name=NO04G02610.2|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp|location=Sequence derived from alignment at chr4:695782..698285+ (Nannochloropsis oceanica)
CATGCCCATATGTTGTTCTGTTCTGTTTTGCGCAGTGCAAGGTCTTGAAT
CTGTGCTTTGGACTGCGTTCGTGTGTGCATGGCTGGACCAGCCAAGACCC
CAAGTCTGCTTGAAAACCTCCTCCCCCTCCTCACCCCATATTTCCAGCAG
GGACAGTACCTCCTGCCCTATCCTTTTCTGGTACCACATGGCAGACCACA
TCGCGCTCCCAGAAACTAGTACTTTGCTCACTCTCCCCATCTTCACCCCA
CATCTTCACAGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACA
GAGATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGC
TACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGA
CCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGGTGAGAGAGGAGCTA
GGAGGGCCGGTCGGGATGAAGTCATGTGTGGGGAGCGTTGCGTGTCCAAG
TGTGCGGGAGAGGGAGGTTGATAGATTTACAGGTGTCTCTTTGTGCGCCG
AGGTTTTAATGTCTATGGAGGTGTATTCTAATTTCAGCGCACATCATTTC
TCACAATCTGTATCCCTACCTTCTTCACTCTCTCCCTGTTTCTCTCTATC
CCCCTCCCTACCTACCACAGCTCCAGATCGCCTTGGACGAGTTAAAGGCT
TTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAAGGACCTGCGAGA
GCCACGAGAGATTCTGGGGCATGTGGTGCGTTGTTTGCTTAAGTCTCTTT
CTTCGGCCCTCTCGTCACCACTTGTCCCTCTACAAATCCCTCAAATCCCC
CTTCTCAATCATCATGCTCTCCCTTCTCTCCTTCCCCTCCTGTCATACCA
AAATGCAGGACTCCCTGTACCACGAAGGCAAATTCTGTGTCGAAGGCGTG
GAGGGGATTCCCCACGGTCAAGCCAAGCTCGCTTCCATGCTCGCAGAGGG
CCATGAGCTTTTGCGGGAGTGCTTGGAACGGGTGGATTTCTACAAGGTAC
GACTTTGTTACTGCTTTCCTCCGCTTCCCTTTCTCCCTCCCTCCTTCCGT
CGCTCCTTTCCTTTCTGTATTCCTCCCTTCCTCCCATGATCAAGTAAATC
CTCTTCCTTCCTTCCTCCCCTCCTCCTCTCCCAAGGTCTCCGAGCCCCTC
CGTCCGCTTCAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCT
CAAAGACAAACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAA
AGCTGGCTGAAATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCG
AGTCCCCAAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGC
GGTGAGCTTGGATGGAAAAAATGGGGCTTACGGAGGGAGGAGAGAAGCGG
AGGGGGAGAAGGGGGAAACAGTCGGGAATTCCGCTTTATCTCCTTTGTTT
GGATTGGCTGAGCTTTGCATTTTCTGACTGACCATTGCCCTTTCCCTTCT
TGCGGCTCTCTTCTTTTCTCGACTTTTCCCTCCACCAAACCACCATAGGT
CTTGGCAACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGT
TCAAGACGGACTTTTACAAGGTAAGAACATATAAGAACATTTGCCCGTTG
GCCGAGCTCTCGCCGATTGCCTCCTCCTCAGATGCATGGAGAGGTGTCAA
GATGTGTGTCCCGAAAGACAAGCTCACACATCCTCTCCCCCCCATTCCGC
ATATCCATGGTCATTTCTGCGTCTGATTTCTACCGCTTTCAGTGATTTTC
ATCTCCCTTCCCCCACCCCCATCCCCGCCCCTTCTCCCCTTTCTCCCTAG
GTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCGAGTCCATCAAAAT
GCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAGGACTTGA
TTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGAATGGAAGGAGGGC
AAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGTGAG
TAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAGGTGCAGAATAAAA
TGTGAGGTGGCTGTGATGGAGGGAGGGGGGAAGAAGAGGGGGGAGAGGGA
GATGTAGTGTGTATTGATGGAGCTTATGGAGGGAGCGAGAGAGACAGAGA
GAGACAGAACGGGTTAGAGAGAGAGAAATGTACAGGGAGGAGAGAGAGTG
AGTGTGAATTTGTATTTGGTTGTGTGGAAGCGAAATTCCAAAAGACGTGA
TGACTCTCTTTCTGCCTTCGTATGTTTCCTTCGCGGACTCGTTATTGCGG
CGTTTTTGGTGCTGGTGCTGTCTGGAGAGAGAGAGAGAAGATAGGGCACC
CATATTTCGAAGGAATCCAAGATAAACTAATATGCATTTGGGGGGGAGAG
GGGG
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Coding sequence (CDS) from alignment at chr4:695782..698285+

>NO04G02610.2 ID=NO04G02610.2|Name=NO04G02610.2|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr4:695782..698285+ (Nannochloropsis oceanica)
ATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTAC
GGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCG
TCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTGGAC
GAGTTAAAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAA
GGACCTGCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGTACC
ACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGTCAA
GCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGAGTG
CTTGGAACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGCTTC
AGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGACAAA
CCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTGA
AATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAAA
GAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTGAGCTTG
GATGGAAAAAATGGGGCTTACGGAGGGAGGAGAGAAGCGGAGGGGGAGAA
GGGGGAAACAGTCGGGAATTCCGCTTTATCTCCTTTGTTTGGATTGGCTG
AGCTTTGCATTTTCTGA
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Synonyms
Publications