NO04G02220, NO04G02220 (gene) Nannochloropsis oceanica

Overview
NameNO04G02220
Unique NameNO04G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1609
Alignment locationchr4:638136..639744 +

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA-splicing endonuclease
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:638136..639744 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024337tRNA_splic_suSen54
IPR024336tRNA_splic_suSen54_N
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Homology
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BLAST of NO04G02220 vs. NCBI_GenBank
Match: EWM28642.1 (tRNA-splicing endonuclease [Nannochloropsis gaditana])

HSP 1 Score: 366.7 bits (940), Expect = 9.700e-98
Identity = 181/247 (73.28%), Postives = 207/247 (83.81%), Query Frame = 0 
Query:    1 MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDSGQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHYLTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFGGTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLEN 248
            MEVDESV  LLA  G+L    G+E  +  E+    +R             G PLVAADDV  NL+VWARTL+RPPKGNLKTY EGLWRPDKQLCRIIKTRGNDLRSMGFPYEGD HL+PEETL+LVERCKLEVGNLTTPELYEAVDL HYLTYAYFRQTSLI+FRA+PSCPVGVAFEA+APSSQF+KTA+ +PIFYIM+GGTR PVP++E+++A+F+WAKGVPVKYAM+S +GGVFAVN+AH  LEN
Sbjct:    1 MEVDESVGHLLA-VGQLSEREGEEG-DAHEEELSKERXXXXXXXXXXXXXGLPLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLTYAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLEN 245
The following BLAST results are available for this feature:
BLAST of NO04G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28642.19.700e-9873.28tRNA-splicing endonuclease [Nannochloropsis gadita... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009577NSK009577Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02220.1NO04G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578744gene_2015Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100182g12gene1960Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02220.1NO04G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02220 ID=NO04G02220|Name=NO04G02220|organism=Nannochloropsis oceanica|type=gene|length=1609bp
ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG
TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA
GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG
ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG
GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG
AAATCTCAAGgtacgtgggtacttttgatgctttggcttggcgcaggggg
aggggaggaggaaagtgtgcggagggggggggcttgtggactccgaggca
atgcagtttacagacatggagttatgaattgttaaaaatgttgcctcttg
aataccgatacctttcccttttacttgcccggtcagcgctcgatacaagc
tggtcaatgagatatccgacaagcgtctcattcaccctcacttctccaac
ttttagACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCG
CATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCCTATG
AGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGAACGC
TGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAGCCGT
GGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGCTTAA
TTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCC
CACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTATCTT
TTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAAAAGA
TGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATG
ATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTT
GGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTGCAGCCGACGCGG
GGGGCGGGGCGAGGGCTATTACTTCATCTGTTGATGTGGTATGTGGAGAT
GGAGAAGGGGGGCAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCG
TCATCTGTCTAGGAACCAGCGTCGAGAGGAGGAGCGGGCAAAACATCAAC
AAGGGCAGCAGGAGTTGCGGCAACGGCAGCAGCTCATACAGCAGCAGCAG
AAAAGAAATGAAGGGTGTGCAGGGGAGGGACCGATGCAGCGACAGGAACA
GGAAAAGCAATTGCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGG
AAGGGCAGCAGGCAGAAATTGATGTGCGAGCAGCACCGGCAGAAGGCGAA
ATAGGAGTGATATTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGA
CCATGCAAAGCAGGTGTCGCCAACGGAAGAGGATGATGTTGTAGGAAGAG
GAACAGAAAGAGTGGAGGAGGCAATCACGGCGTAGGACCGTGGAAGTAAA
AAAGCAGCTCATCAATATTTTTAAAACAGCCCTATACCAAAACAACATAA
CACCCCATA
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protein sequence of NO04G02220.1

>NO04G02220.1-protein ID=NO04G02220.1-protein|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDS
GQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTR
GNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHY
LTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFG
GTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLENHKP
LATVAAAAADAGGGARAITSSVDVVCGDGEGGQRQQQGNGGVSGRHLSRN
QRREEERAKHQQGQQELRQRQQLIQQQQKRNEGCAGEGPMQRQEQEKQLQ
TEAEVVRRLDEEGQQAEIDVRAAPAEGEIGVILTKEGGRSSTPDDHAKQV
SPTEEDDVVGRGTERVEEAITA*
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Synonyms
Publications