NO04G02220.1, NO04G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02220.1
Unique NameNO04G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1363
Alignment locationchr4:638136..639744 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:638136..639744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02220.1 vs.
Match: EWM28642.1 (tRNA-splicing endonuclease [Nannochloropsis gaditana])

HSP 1 Score: 387.1 bits (993), Expect = 6.900e-104
Identity = 213/335 (63.58%), Postives = 250/335 (74.63%), Query Frame = 0 
Query:    1 MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDSGQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHYLTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFGGTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLENHKPLATVAAAAADAGGGARAITSSVDVVCGDGEGGQRQQQGNGGVSGRH--LSRNQRREEERAKHQQGQQELRQRQQLIQQQQKRNEG 334
            MEVDESV  LLA  G+L    G+E  +  E+    +R RNEEF+EEDE+ G PLVAADDV  NL+VWARTL+RPPKGNLKTY EGLWRPDKQLCRIIKTRGNDLRSMGFPYEGD HL+PEETL+LVERCKLEVGNLTTPELYEAVDL HYLTYAYFRQTSLI+FRA+PSCPVGVAFEA+APSSQF+KTA+ +PIFYIM+GGTR PVP++E+++A+F+WAKGVPVKYAM+S +GGVFAVN+AH  LEN     T   AAA           +  V C      +R ++G+    GR   L R  RRE ER +HQ+  +   Q    +Q      EG
Sbjct:    1 MEVDESVGHLLA-VGQLSEREGEEG-DAHEEELSKERHRNEEFEEEDEEEGLPLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLTYAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTDTRGKAAA-----------ATVVSCEQ----ERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALRSKEQECHDLQSGNDEKEG 318
The following BLAST results are available for this feature:
BLAST of NO04G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28642.16.900e-10463.58tRNA-splicing endonuclease [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02220NO04G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02220.1NO04G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02220.1.cds1NO04G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02220.1.cds2NO04G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02220.1 ID=NO04G02220.1|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG
TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA
GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG
ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG
GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG
AAATCTCAAGACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCT
GTCGCATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCC
TATGAGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGA
ACGCTGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAG
CCGTGGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGC
TTAATTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGA
GGCCCACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTA
TCTTTTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAA
AAGATGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGC
CATGATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCT
CCTTGGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTGCAGCCGAC
GCGGGGGGCGGGGCGAGGGCTATTACTTCATCTGTTGATGTGGTATGTGG
AGATGGAGAAGGGGGGCAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTG
GTCGTCATCTGTCTAGGAACCAGCGTCGAGAGGAGGAGCGGGCAAAACAT
CAACAAGGGCAGCAGGAGTTGCGGCAACGGCAGCAGCTCATACAGCAGCA
GCAGAAAAGAAATGAAGGGTGTGCAGGGGAGGGACCGATGCAGCGACAGG
AACAGGAAAAGCAATTGCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGAC
GAGGAAGGGCAGCAGGCAGAAATTGATGTGCGAGCAGCACCGGCAGAAGG
CGAAATAGGAGTGATATTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGG
ATGACCATGCAAAGCAGGTGTCGCCAACGGAAGAGGATGATGTTGTAGGA
AGAGGAACAGAAAGAGTGGAGGAGGCAATCACGGCGTAGGACCGTGGAAG
TAAAAAAGCAGCTCATCAATATTTTTAAAACAGCCCTATACCAAAACAAC
ATAACACCCCATA
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protein sequence of NO04G02220.1

>NO04G02220.1-protein ID=NO04G02220.1-protein|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDS
GQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTR
GNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHY
LTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFG
GTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLENHKP
LATVAAAAADAGGGARAITSSVDVVCGDGEGGQRQQQGNGGVSGRHLSRN
QRREEERAKHQQGQQELRQRQQLIQQQQKRNEGCAGEGPMQRQEQEKQLQ
TEAEVVRRLDEEGQQAEIDVRAAPAEGEIGVILTKEGGRSSTPDDHAKQV
SPTEEDDVVGRGTERVEEAITA*
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mRNA from alignment at chr4:638136..639744+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02220.1 ID=NO04G02220.1|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at chr4:638136..639744+ (Nannochloropsis oceanica)
ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG
TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA
GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG
ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG
GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG
AAATCTCAAGGTACGTGGGTACTTTTGATGCTTTGGCTTGGCGCAGGGGG
AGGGGAGGAGGAAAGTGTGCGGAGGGGGGGGGCTTGTGGACTCCGAGGCA
ATGCAGTTTACAGACATGGAGTTATGAATTGTTAAAAATGTTGCCTCTTG
AATACCGATACCTTTCCCTTTTACTTGCCCGGTCAGCGCTCGATACAAGC
TGGTCAATGAGATATCCGACAAGCGTCTCATTCACCCTCACTTCTCCAAC
TTTTAGACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCG
CATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCCTATG
AGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGAACGC
TGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAGCCGT
GGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGCTTAA
TTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCC
CACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTATCTT
TTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAAAAGA
TGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATG
ATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTT
GGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTGCAGCCGACGCGG
GGGGCGGGGCGAGGGCTATTACTTCATCTGTTGATGTGGTATGTGGAGAT
GGAGAAGGGGGGCAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCG
TCATCTGTCTAGGAACCAGCGTCGAGAGGAGGAGCGGGCAAAACATCAAC
AAGGGCAGCAGGAGTTGCGGCAACGGCAGCAGCTCATACAGCAGCAGCAG
AAAAGAAATGAAGGGTGTGCAGGGGAGGGACCGATGCAGCGACAGGAACA
GGAAAAGCAATTGCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGG
AAGGGCAGCAGGCAGAAATTGATGTGCGAGCAGCACCGGCAGAAGGCGAA
ATAGGAGTGATATTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGA
CCATGCAAAGCAGGTGTCGCCAACGGAAGAGGATGATGTTGTAGGAAGAG
GAACAGAAAGAGTGGAGGAGGCAATCACGGCGTAGGACCGTGGAAGTAAA
AAAGCAGCTCATCAATATTTTTAAAACAGCCCTATACCAAAACAACATAA
CACCCCATA
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Coding sequence (CDS) from alignment at chr4:638136..639744+

>NO04G02220.1 ID=NO04G02220.1|Name=NO04G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr4:638136..639744+ (Nannochloropsis oceanica)
ATGGAAGTGGACGAGTCAGTTCAGCGGCTGTTGGCCGGGTGTGGGCGACT
ATGCGCCGACGGAGGGGACGAGGATGTGGAGGACAGGGAGGATGGCGGGC
CTACCAAGCGGCCTCGCAACGAAGAGTTTGACGAGGAGGACGAGGACAGT
GGACAACCTTTGGTGGCTGCGGACGACGTGGCAACCAACCTCAAGGTATG
GGCACGGACACTGCAGCGTCCGCCCAAGGGAAATCTCAAGACTTACAGCG
AAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCGCATTATTAAGACCCGC
GGAAACGATTTACGGTCCATGGGCTTCCCCTATGAGGGCGACATACACCT
CTACCCGGAGGAAACCCTCTTCCTCGTCGAACGCTGCAAGTTGGAAGTAG
GAAACCTAACCACCCCCGAACTCTACGAAGCCGTGGATTTGTACCATTAT
CTGACATATGCTTACTTCCGTCAGACCAGCTTAATTATCTTTCGCGCGGA
TCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCCCACGCGCCCTCGTCTC
AATTTAAGAAAACCGCGCAGAATTATCCTATCTTTTACATCATGTTCGGA
GGCACCCGTGCCCCAGTCCCGACCGACGAAAAGATGGTAGCAATCTTTGA
ATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATGATCTCAGATGAAGGAG
GGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTTGGAGAACCACAAGCCC
CTGGCAACAGTGGCAGCGGCTGCAGCCGACGCGGGGGGCGGGGCGAGGGC
TATTACTTCATCTGTTGATGTGGTATGTGGAGATGGAGAAGGGGGGCAGC
GGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCGTCATCTGTCTAGGAAC
CAGCGTCGAGAGGAGGAGCGGGCAAAACATCAACAAGGGCAGCAGGAGTT
GCGGCAACGGCAGCAGCTCATACAGCAGCAGCAGAAAAGAAATGAAGGGT
GTGCAGGGGAGGGACCGATGCAGCGACAGGAACAGGAAAAGCAATTGCAG
ACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGGAAGGGCAGCAGGCAGA
AATTGATGTGCGAGCAGCACCGGCAGAAGGCGAAATAGGAGTGATATTAA
CAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGACCATGCAAAGCAGGTG
TCGCCAACGGAAGAGGATGATGTTGTAGGAAGAGGAACAGAAAGAGTGGA
GGAGGCAATCACGGCGTAG
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Synonyms
Publications