NO04G01690, NO04G01690 (gene) Nannochloropsis oceanica

Overview
NameNO04G01690
Unique NameNO04G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr4:505546..506988 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription initiation factor TFIID subunit 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:505546..506988 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa
Homology
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_019647109.1 (PREDICTED: transcription initiation factor TFIID subunit 10-like [Branchiostoma belcheri])

HSP 1 Score: 80.1 bits (196), Expect = 7.700e-12
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 0 
Query:   34 TGANGGGHVERSHGIDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK----------EHDGETLKMEDLMESLGKYGIQKLK 140
            TG +  G   RS G+    LA FL  L+ Y PTIP+ VTAY+L +AG   +DP+I +L+SLAA+K VS+I +D   + +M+          +    TL MEDL  +L +YGI   K
Sbjct:   21 TGTDVVGGEVRSAGV---SLADFLLQLEDYTPTIPDAVTAYYLNRAGFEASDPRIVRLISLAAQKFVSDIANDALQHCKMRGSAQSSRKAGKDKRYTLSMEDLSPALSEYGINVKK 133
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_013991135.1 (PREDICTED: transcription initiation factor TFIID subunit 10-like [Salmo salar] >ACI66751.1 Transcription initiation factor TFIID subunit 10 [Salmo salar] >ACI68141.1 Transcription initiation factor TFIID subunit 10 [Salmo salar])

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-11
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 0 
Query:   53 LAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGE-TLKMEDLMESLGKYGIQKLK 140
            LA FL  L+ Y PTIP+ VT Y+L +AG   +DP+I +LVSLAA+K +S+I +D   + +MK           +HD + TL MEDL  +L +YGI   K
Sbjct:   81 LADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKHDKKYTLTMEDLSPALSEYGINVKK 179
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: ACI67981.1 (Transcription initiation factor TFIID subunit 10 [Salmo salar])

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-11
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 0 
Query:   53 LAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGE-TLKMEDLMESLGKYGIQKLK 140
            LA FL  L+ Y PTIP+ VT Y+L +AG   +DP+I +LVSLAA+K +S+I +D   + +MK           +HD + TL MEDL  +L +YGI   K
Sbjct:   81 LADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALLHCKMKGTASGSSRNKTKHDKKYTLTMEDLSPALSEYGINVKK 179
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_002613905.1 (hypothetical protein BRAFLDRAFT_128646 [Branchiostoma floridae] >EEN69914.1 hypothetical protein BRAFLDRAFT_128646 [Branchiostoma floridae])

HSP 1 Score: 78.6 bits (192), Expect = 2.200e-11
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 0 
Query:   39 GGHVERSHGIDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK----------EHDGETLKMEDLMESLGKYGIQKLK 140
            GG V R+ G+    LA FL  L+ Y PTIP+ VTAY+L +AG   +DP+I +L+SLAA+K VS+I +D   + +M+          +    TL MEDL  +L +YGI   K
Sbjct:   25 GGEV-RTAGV---SLADFLLQLEDYTPTIPDAVTAYYLNRAGFEASDPRIVRLISLAAQKFVSDIANDALQHCKMRGSAQSSRKSGKDKRYTLSMEDLSPALSEYGINVKK 131
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_008287215.1 (PREDICTED: transcription initiation factor TFIID subunit 10 [Stegastes partitus])

HSP 1 Score: 77.8 bits (190), Expect = 3.800e-11
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:   48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140
            I    LA FL  L++Y PTIP+ VT Y+L +AG   +DP+I +L+SLA++K +S+I +D   Y +MK           +    TL MEDL  +L +YG+   K
Sbjct:   79 ISTTPLADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLTPALSEYGVNVKK 181
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_022054483.1 (transcription initiation factor TFIID subunit 10 [Acanthochromis polyacanthus])

HSP 1 Score: 77.8 bits (190), Expect = 3.800e-11
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:   48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140
            I    LA FL  L++Y PTIP+ VT Y+L +AG   +DP+I +L+SLA++K +S+I +D   Y +MK           +    TL MEDL  +L +YG+   K
Sbjct:   79 ISTTPLADFLMQLEEYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLASQKFISDIANDALQYCKMKGTASGSSRSKTKDKKYTLTMEDLTPALSEYGVNVKK 181
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: NP_001090514.1 (TATA-box binding protein associated factor 10 L homeolog [Xenopus laevis] >AAI23260.1 Taf10b protein [Xenopus laevis])

HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 0 
Query:   48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140
            I    L  FL  L+ Y PTIP+ VT Y+L +AG   +DP+I +L+SLAA+K +S+I +D   + +MK           +    TL MEDL  +LG+YGI   K
Sbjct:   89 ISTTPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDKKYTLTMEDLTPALGEYGINVKK 191
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: NP_001290762.1 (transcription initiation factor TFIID subunit 10 [Esox lucius] >ACO14002.1 Transcription initiation factor TFIID subunit 10 [Esox lucius])

HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 0 
Query:   48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRM------------KEHDGETLKMEDLMESLGKYGIQKLK 140
            I+   LA FL  L+ Y PTIP+ VT Y+L +AG   +DP+I +LVSLAA+K +S+I +D   + +M            K+    TL MEDL  +L +YGI   K
Sbjct:   77 INSTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKQDKKYTLTMEDLSPALSEYGINVKK 180
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_010873961.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Esox lucius])

HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 0 
Query:   48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRM------------KEHDGETLKMEDLMESLGKYGIQKLK 140
            I+   LA FL  L+ Y PTIP+ VT Y+L +AG   +DP+I +LVSLAA+K +S+I +D   + +M            K+    TL MEDL  +L +YGI   K
Sbjct:   88 INSTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKQDKKYTLTMEDLSPALSEYGINVKK 191
[Close]
BLAST of NO04G01690 vs. NCBI_GenBank
Match: XP_010873963.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X3 [Esox lucius])

HSP 1 Score: 77.4 bits (189), Expect = 5.000e-11
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:   48 IDPRELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 140
            I+   LA FL  L+ Y PTIP+ VT Y+L +AG   +DP+I +LVSLAA+K +S+I +D   + +MK           +    TL MEDL  +L +YGI   K
Sbjct:   77 INSTPLADFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLVSLAAQKFISDIANDALQHCKMKGTASGSSRNKTKDKKYTLTMEDLSPALSEYGINVKK 179
The following BLAST results are available for this feature:
BLAST of NO04G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_019647109.17.700e-1241.38PREDICTED: transcription initiation factor TFIID s... [more]
XP_013991135.11.700e-1144.44PREDICTED: transcription initiation factor TFIID s... [more]
ACI67981.11.700e-1144.44Transcription initiation factor TFIID subunit 10 [... [more]
XP_002613905.12.200e-1142.34hypothetical protein BRAFLDRAFT_128646 [Branchiost... [more]
XP_008287215.13.800e-1139.81PREDICTED: transcription initiation factor TFIID s... [more]
XP_022054483.13.800e-1139.81transcription initiation factor TFIID subunit 10 [... [more]
NP_001090514.15.000e-1140.78TATA-box binding protein associated factor 10 L ho... [more]
NP_001290762.15.000e-1141.35transcription initiation factor TFIID subunit 10 [... [more]
XP_010873961.15.000e-1141.35PREDICTED: transcription initiation factor TFIID s... [more]
XP_010873963.15.000e-1141.75PREDICTED: transcription initiation factor TFIID s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009642NSK009642Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01690.1NO04G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G01690.2NO04G01690.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|289831gene_1957Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01690.1NO04G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G01690.2NO04G01690.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01690 ID=NO04G01690|Name=NO04G01690|organism=Nannochloropsis oceanica|type=gene|length=1443bp
CTGAGTTTCCCCTGAGCGCCACCCTCATCACACACATGTGTACACATACA
CACAAACACACAAACACACAAACACACAAATACACAAACACACAAACACA
CACACACACACATGAACACATCCCCCACCCCAAATTATCACTTTCTACAT
CATTCGGCTTACATATGTAAAGTCTCACAGCATCTTTCAACCACAGAGGC
GCAGCAGGGCCGACGCCAGGAACATGAGCCGACGGGCCAGCGGGGAGCAA
GTGAAGCAAGACGCGGGCATGGAAGAAGTGGACGACCCTACCCGAGTGTT
GGAGCGGGAACGAGTCGGTGACACAGGGGCCAATGGGGGCGGACATGTCG
AACGAAGCCATGGCATCGACCCAAGGGAACTGGCACCCTTTCTGAATGCA
CTGGACCAGTACAATCCCACGgtaggggaaggacaggggtgaaggtgatg
cacatgatgcatgagtatgtacgtgcttcgcaagcatgaaggggcaatac
ccataacgtcattatttggtaccatgatgttatcgtttctttgggctctt
atctctacagagttgttggttgtctcattccatgtcctccctccctgtcc
tctcctatactcctccaccaaaactctctcacagATCCCAGAGGAAGTCA
CAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATg
tacgtggactagtaggcacaatggagccaacatttccgactctcccctcc
agcccttccgctgtttttttttctttttttcttttcatttttaacttgat
ttgaataaaacacaaattaccgaaaagaaatctcggcaaccatctcctcc
aatctgattcattgtctcttctatattttgtcgcattcattatcccttcc
tcccctcttcccccgtccaacccgctatttctcccatccttcactccctt
cacgacagCAAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGA
AATCGTGCACGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAG
AGACACTCAAAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATC
CAGAAACTCAAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGG
GGGAAAAAGTCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGG
GAGTCATTCGTCGGTCGGCCTCTAGGAATCTGTAGATAAAGTTAGGAAAA
TATAATATAATGAAAGACGAGCGACAAGAGAAGATGTACAGAAAAAAGTT
TTACGGCCGTCGGAGACATGTTACTCATTCATTCATTACACCCATACCCT
TGTACACGAACTTTACTGATATGCTGGGCGGTACGCGCTTATGTGATGAT
GACTTACGCTGCTCGAAAGAAAAGGCGACTTGCATTACTGGAG
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protein sequence of NO04G01690.1

>NO04G01690.1-protein ID=NO04G01690.1-protein|Name=NO04G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSRRASGEQVKQDAGMEEVDDPTRVLERERVGDTGANGGGHVERSHGIDP
RELAPFLNALDQYNPTIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLV
SEIVHDTTTYSRMKEHDGETLKMEDLMESLGKYGIQKLKVGGAECEAGEE
EGGKSPLTGREAVGGGGGGVIRRSASRNL*
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protein sequence of NO04G01690.2

>NO04G01690.2-protein ID=NO04G01690.2-protein|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MSMYVLRKHEGAIPITSLFGTMMLSFLWALISTELLVVSFHVLPPCPLLY
SSTKTLSQIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTT
TYSRMKEHDGETLKMEDLMESLGKYGIQKLKVGGAECEAGEEEGGKSPLT
GREAVGGGGGGVIRRSASRNL*
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Synonyms
Publications