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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:505546..506988 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01690.2 vs.
Match: XP_010411579.2 (tripeptidyl-peptidase 1 [Corvus cornix cornix]) HSP 1 Score: 65.1 bits (157), Expect = 2.500e-7 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 0
Query: 56 LSQIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 132
LSQIP+ VT Y+L +AG +DP+I +L+SLAA+K +S+I +D + +MK + TL MEDL +L +YGI K
Sbjct: 481 LSQIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDKKYTLTMEDLTPALAEYGINVKK 567
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01690.2 ID=NO04G01690.2|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp CTGAGTTTCCCCTGAGCGCCACCCTCATCACACACATGTGTACACATACA CACAAACACACAAACACACAAACACACAAATACACAAACACACAAACACA CACACACACACATGAACACATCCCCCACCCCAAATTATCACTTTCTACAT CATTCGGCTTACATATGTAAAGTCTCACAGCATCTTTCAACCACAGAGGC GCAGCAGGGCCGACGCCAGGAACATGAGCCGACGGGCCAGCGGGGAGCAA GTGAAGCAAGACGCGGGCATGGAAGAAGTGGACGACCCTACCCGAGTGTT GGAGCGGGAACGAGTCGGTGACACAGGGGCCAATGGGGGCGGACATGTCG AACGAAGCCATGGCATCGACCCAAGGGAACTGGCACCCTTTCTGAATGCA CTGGACCAGTACAATCCCACGGTAGGGGAAGGACAGGGGTGAAGGTGATG CACATGATGCATGAGTATGTACGTGCTTCGCAAGCATGAAGGGGCAATAC CCATAACGTCATTATTTGGTACCATGATGTTATCGTTTCTTTGGGCTCTT ATCTCTACAGAGTTGTTGGTTGTCTCATTCCATGTCCTCCCTCCCTGTCC TCTCCTATACTCCTCCACCAAAACTCTCTCACAGATCCCAGAGGAAGTCA CAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATC AAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCGTGCA CGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAGAGACACTCA AAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAAACTC AAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAAAAAG TCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTCATTC GTCGGTCGGCCTCTAGGAATCTGTAGATAAAGTTAGGAAAATATAATATA ATGAAAGACGAGCGACAAGAGAAGATGTACAGAAAAAAGTTTTACGGCCG TCGGAGACATGTTACTCATTCATTCATTACACCCATACCCTTGTACACGA ACTTTACTGATATGCTGGGCGGTACGCGCTTATGTGATGATGACTTACGC TGCTCGAAAGAAAAGGCGACTTGCATTACTGGAG back to topprotein sequence of NO04G01690.2 >NO04G01690.2-protein ID=NO04G01690.2-protein|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp MSMYVLRKHEGAIPITSLFGTMMLSFLWALISTELLVVSFHVLPPCPLLY SSTKTLSQIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTT TYSRMKEHDGETLKMEDLMESLGKYGIQKLKVGGAECEAGEEEGGKSPLT GREAVGGGGGGVIRRSASRNL* back to topmRNA from alignment at chr4:505546..506988+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01690.2 ID=NO04G01690.2|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr4:505546..506988+ (Nannochloropsis oceanica) CTGAGTTTCCCCTGAGCGCCACCCTCATCACACACATGTGTACACATACA
CACAAACACACAAACACACAAACACACAAATACACAAACACACAAACACA
CACACACACACATGAACACATCCCCCACCCCAAATTATCACTTTCTACAT
CATTCGGCTTACATATGTAAAGTCTCACAGCATCTTTCAACCACAGAGGC
GCAGCAGGGCCGACGCCAGGAACATGAGCCGACGGGCCAGCGGGGAGCAA
GTGAAGCAAGACGCGGGCATGGAAGAAGTGGACGACCCTACCCGAGTGTT
GGAGCGGGAACGAGTCGGTGACACAGGGGCCAATGGGGGCGGACATGTCG
AACGAAGCCATGGCATCGACCCAAGGGAACTGGCACCCTTTCTGAATGCA
CTGGACCAGTACAATCCCACGGTAGGGGAAGGACAGGGGTGAAGGTGATG
CACATGATGCATGAGTATGTACGTGCTTCGCAAGCATGAAGGGGCAATAC
CCATAACGTCATTATTTGGTACCATGATGTTATCGTTTCTTTGGGCTCTT
ATCTCTACAGAGTTGTTGGTTGTCTCATTCCATGTCCTCCCTCCCTGTCC
TCTCCTATACTCCTCCACCAAAACTCTCTCACAGATCCCAGAGGAAGTCA
CAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATG
TACGTGGACTAGTAGGCACAATGGAGCCAACATTTCCGACTCTCCCCTCC
AGCCCTTCCGCTGTTTTTTTTTCTTTTTTTCTTTTCATTTTTAACTTGAT
TTGAATAAAACACAAATTACCGAAAAGAAATCTCGGCAACCATCTCCTCC
AATCTGATTCATTGTCTCTTCTATATTTTGTCGCATTCATTATCCCTTCC
TCCCCTCTTCCCCCGTCCAACCCGCTATTTCTCCCATCCTTCACTCCCTT
CACGACAGCAAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGA
AATCGTGCACGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAG
AGACACTCAAAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATC
CAGAAACTCAAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGG
GGGAAAAAGTCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGG
GAGTCATTCGTCGGTCGGCCTCTAGGAATCTGTAGATAAAGTTAGGAAAA
TATAATATAATGAAAGACGAGCGACAAGAGAAGATGTACAGAAAAAAGTT
TTACGGCCGTCGGAGACATGTTACTCATTCATTCATTACACCCATACCCT
TGTACACGAACTTTACTGATATGCTGGGCGGTACGCGCTTATGTGATGAT
GACTTACGCTGCTCGAAAGAAAAGGCGACTTGCATTACTGGAG back to topCoding sequence (CDS) from alignment at chr4:505546..506988+ >NO04G01690.2 ID=NO04G01690.2|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr4:505546..506988+ (Nannochloropsis oceanica) ATGAGTATGTACGTGCTTCGCAAGCATGAAGGGGCAATACCCATAACGTC ATTATTTGGTACCATGATGTTATCGTTTCTTTGGGCTCTTATCTCTACAG AGTTGTTGGTTGTCTCATTCCATGTCCTCCCTCCCTGTCCTCTCCTATAC TCCTCCACCAAAACTCTCTCACAGATCCCAGAGGAAGTCACAGCATACTT CCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATCAAAAAGCTTG TATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCGTGCACGACACCACA ACCTACAGTCGGATGAAGGAACATGACGGAGAGACACTCAAAATGGAGGA TTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAAACTCAAAGTAGGAG GAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAAAAAGTCCCTTGACG GGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTCATTCGTCGGTCGGC CTCTAGGAATCTGTAG back to top
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