NO04G01690.2, NO04G01690.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01690.2
Unique NameNO04G01690.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1184
Alignment locationchr4:505546..506988 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:505546..506988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G01690.2 vs.
Match: XP_010411579.2 (tripeptidyl-peptidase 1 [Corvus cornix cornix])

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-7
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 0
Query:   56 LSQIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTTTYSRMK-----------EHDGETLKMEDLMESLGKYGIQKLK 132
            LSQIP+ VT Y+L +AG   +DP+I +L+SLAA+K +S+I +D   + +MK           +    TL MEDL  +L +YGI   K
Sbjct:  481 LSQIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASGSSRSKSKDKKYTLTMEDLTPALAEYGINVKK 567          
The following BLAST results are available for this feature:
BLAST of NO04G01690.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_010411579.22.500e-741.38tripeptidyl-peptidase 1 [Corvus cornix cornix][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01690NO04G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01690.2NO04G01690.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01690.2.cds1NO04G01690.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01690.2.cds2NO04G01690.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01690.2 ID=NO04G01690.2|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
CTGAGTTTCCCCTGAGCGCCACCCTCATCACACACATGTGTACACATACA
CACAAACACACAAACACACAAACACACAAATACACAAACACACAAACACA
CACACACACACATGAACACATCCCCCACCCCAAATTATCACTTTCTACAT
CATTCGGCTTACATATGTAAAGTCTCACAGCATCTTTCAACCACAGAGGC
GCAGCAGGGCCGACGCCAGGAACATGAGCCGACGGGCCAGCGGGGAGCAA
GTGAAGCAAGACGCGGGCATGGAAGAAGTGGACGACCCTACCCGAGTGTT
GGAGCGGGAACGAGTCGGTGACACAGGGGCCAATGGGGGCGGACATGTCG
AACGAAGCCATGGCATCGACCCAAGGGAACTGGCACCCTTTCTGAATGCA
CTGGACCAGTACAATCCCACGGTAGGGGAAGGACAGGGGTGAAGGTGATG
CACATGATGCATGAGTATGTACGTGCTTCGCAAGCATGAAGGGGCAATAC
CCATAACGTCATTATTTGGTACCATGATGTTATCGTTTCTTTGGGCTCTT
ATCTCTACAGAGTTGTTGGTTGTCTCATTCCATGTCCTCCCTCCCTGTCC
TCTCCTATACTCCTCCACCAAAACTCTCTCACAGATCCCAGAGGAAGTCA
CAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATC
AAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCGTGCA
CGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAGAGACACTCA
AAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAAACTC
AAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAAAAAG
TCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTCATTC
GTCGGTCGGCCTCTAGGAATCTGTAGATAAAGTTAGGAAAATATAATATA
ATGAAAGACGAGCGACAAGAGAAGATGTACAGAAAAAAGTTTTACGGCCG
TCGGAGACATGTTACTCATTCATTCATTACACCCATACCCTTGTACACGA
ACTTTACTGATATGCTGGGCGGTACGCGCTTATGTGATGATGACTTACGC
TGCTCGAAAGAAAAGGCGACTTGCATTACTGGAG
back to top

protein sequence of NO04G01690.2

>NO04G01690.2-protein ID=NO04G01690.2-protein|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MSMYVLRKHEGAIPITSLFGTMMLSFLWALISTELLVVSFHVLPPCPLLY
SSTKTLSQIPEEVTAYFLQQAGVTVNDPKIKKLVSLAAEKLVSEIVHDTT
TYSRMKEHDGETLKMEDLMESLGKYGIQKLKVGGAECEAGEEEGGKSPLT
GREAVGGGGGGVIRRSASRNL*
back to top

mRNA from alignment at chr4:505546..506988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01690.2 ID=NO04G01690.2|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr4:505546..506988+ (Nannochloropsis oceanica)
CTGAGTTTCCCCTGAGCGCCACCCTCATCACACACATGTGTACACATACA CACAAACACACAAACACACAAACACACAAATACACAAACACACAAACACA CACACACACACATGAACACATCCCCCACCCCAAATTATCACTTTCTACAT CATTCGGCTTACATATGTAAAGTCTCACAGCATCTTTCAACCACAGAGGC GCAGCAGGGCCGACGCCAGGAACATGAGCCGACGGGCCAGCGGGGAGCAA GTGAAGCAAGACGCGGGCATGGAAGAAGTGGACGACCCTACCCGAGTGTT GGAGCGGGAACGAGTCGGTGACACAGGGGCCAATGGGGGCGGACATGTCG AACGAAGCCATGGCATCGACCCAAGGGAACTGGCACCCTTTCTGAATGCA CTGGACCAGTACAATCCCACGGTAGGGGAAGGACAGGGGTGAAGGTGATG CACATGATGCATGAGTATGTACGTGCTTCGCAAGCATGAAGGGGCAATAC CCATAACGTCATTATTTGGTACCATGATGTTATCGTTTCTTTGGGCTCTT ATCTCTACAGAGTTGTTGGTTGTCTCATTCCATGTCCTCCCTCCCTGTCC TCTCCTATACTCCTCCACCAAAACTCTCTCACAGATCCCAGAGGAAGTCA CAGCATACTTCCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATG TACGTGGACTAGTAGGCACAATGGAGCCAACATTTCCGACTCTCCCCTCC AGCCCTTCCGCTGTTTTTTTTTCTTTTTTTCTTTTCATTTTTAACTTGAT TTGAATAAAACACAAATTACCGAAAAGAAATCTCGGCAACCATCTCCTCC AATCTGATTCATTGTCTCTTCTATATTTTGTCGCATTCATTATCCCTTCC TCCCCTCTTCCCCCGTCCAACCCGCTATTTCTCCCATCCTTCACTCCCTT CACGACAGCAAAAAGCTTGTATCCCTGGCAGCCGAAAAACTGGTGTCAGA AATCGTGCACGACACCACAACCTACAGTCGGATGAAGGAACATGACGGAG AGACACTCAAAATGGAGGATTTAATGGAAAGTTTGGGGAAATACGGCATC CAGAAACTCAAAGTAGGAGGAGCAGAATGCGAGGCAGGGGAGGAGGAAGG GGGAAAAAGTCCCTTGACGGGAAGGGAGGCAGTTGGAGGAGGTGGAGGGG GAGTCATTCGTCGGTCGGCCTCTAGGAATCTGTAGATAAAGTTAGGAAAA TATAATATAATGAAAGACGAGCGACAAGAGAAGATGTACAGAAAAAAGTT TTACGGCCGTCGGAGACATGTTACTCATTCATTCATTACACCCATACCCT TGTACACGAACTTTACTGATATGCTGGGCGGTACGCGCTTATGTGATGAT GACTTACGCTGCTCGAAAGAAAAGGCGACTTGCATTACTGGAG
back to top

Coding sequence (CDS) from alignment at chr4:505546..506988+

>NO04G01690.2 ID=NO04G01690.2|Name=NO04G01690.2|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr4:505546..506988+ (Nannochloropsis oceanica)
ATGAGTATGTACGTGCTTCGCAAGCATGAAGGGGCAATACCCATAACGTC
ATTATTTGGTACCATGATGTTATCGTTTCTTTGGGCTCTTATCTCTACAG
AGTTGTTGGTTGTCTCATTCCATGTCCTCCCTCCCTGTCCTCTCCTATAC
TCCTCCACCAAAACTCTCTCACAGATCCCAGAGGAAGTCACAGCATACTT
CCTGCAACAAGCTGGTGTCACGGTGAATGACCCAAAAATCAAAAAGCTTG
TATCCCTGGCAGCCGAAAAACTGGTGTCAGAAATCGTGCACGACACCACA
ACCTACAGTCGGATGAAGGAACATGACGGAGAGACACTCAAAATGGAGGA
TTTAATGGAAAGTTTGGGGAAATACGGCATCCAGAAACTCAAAGTAGGAG
GAGCAGAATGCGAGGCAGGGGAGGAGGAAGGGGGAAAAAGTCCCTTGACG
GGAAGGGAGGCAGTTGGAGGAGGTGGAGGGGGAGTCATTCGTCGGTCGGC
CTCTAGGAATCTGTAG
back to top
Synonyms
Publications