NO04G01680, NO04G01680 (gene) Nannochloropsis oceanica

Overview
NameNO04G01680
Unique NameNO04G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1729
Alignment locationchr4:503678..505406 -

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Properties
Property NameValue
DescriptionPhox domain-containing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:503678..505406 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
Homology
BLAST of NO04G01680 vs. NCBI_GenBank
Match: EWM28563.1 (phox domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 2.200e-42
Identity = 157/483 (32.51%), Postives = 213/483 (44.10%), Query Frame = 0
Query:    3 SNASTLHLPQPQHHPHDDGRHKDLPPLQNTPSTADISAGSGLLLDEGDIKHHMFSLDVTSSSPS-------GAGEHQGRSQQDL--SAGGYGWYDNEESMGSMSPYGGGEDDNDSRGSGWGA--VRVLSRMETFREDMMERTAAVG---------EEDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIADESNKNSSNGIRNMGINGRHRDHRPADKEILFHLLKTDFSVMTRQFLDANDVDEFLRRSRSNRERMHRYQCQXXXXXXXXXXXXXXXXXNQPVYAALGVGGLRICQTACGGQHAEFLVCLCLNQRTFVAWKRFSAFVQLYHDGHVAH--GAGRLPATRRAWDTMESRRKWWRCLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASSDVTPEEFGNGHKFSCFSGMAPGTHGTGGDCGWRNVVVCNIRSQEEVLR-EKVLQGGAVSGSDSEGEDDEEGAREER 463
            S   + H P  +   H++ + K    L +   TA             D K H+ SL   S++PS         G   G +   +  S GGYGWY+ +    ++SP   G++  +  G G     VRVLSRMET R D+++ +   G         E  G                                         S  ++++G R      R   HR  + EILFHL +++FSVMTRQFL+                  H +  +                  + VYAALG+GG RICQT  G QHAE+LVCLC+NQ+TF+AW+R+SAF + + D    +   A   P TR AW  +E RRKWWRCL + YLA KL  LESFL A L EV  P LLM FAS   +P        +SC         GT G  G     + +I S EE+L  +KV + G   G +S     +  AREE+
Sbjct:    5 SRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTA-------------DAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEED----NVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTR------RQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASP--SPSTTICDGLWSCPCVREMDDQGTWGANG-----ITHISSNEEMLLCQKVQEAGQFRGIES---GCDTVAREEK 454          
BLAST of NO04G01680 vs. NCBI_GenBank
Match: XP_005854074.1 (hypothetical protein NGA_2005800, partial [Nannochloropsis gaditana CCMP526] >EKU22285.1 hypothetical protein NGA_2005800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.4 bits (459), Expect = 6.400e-42
Identity = 157/483 (32.51%), Postives = 213/483 (44.10%), Query Frame = 0
Query:    3 SNASTLHLPQPQHHPHDDGRHKDLPPLQNTPSTADISAGSGLLLDEGDIKHHMFSLDVTSSSPS-------GAGEHQGRSQQDL--SAGGYGWYDNEESMGSMSPYGGGEDDNDSRGSGWGA--VRVLSRMETFREDMMERTAAVG---------EEDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIADESNKNSSNGIRNMGINGRHRDHRPADKEILFHLLKTDFSVMTRQFLDANDVDEFLRRSRSNRERMHRYQCQXXXXXXXXXXXXXXXXXNQPVYAALGVGGLRICQTACGGQHAEFLVCLCLNQRTFVAWKRFSAFVQLYHDGH--VAHGAGRLPATRRAWDTMESRRKWWRCLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASSDVTPEEFGNGHKFSCFSGMAPGTHGTGGDCGWRNVVVCNIRSQEEVLR-EKVLQGGAVSGSDSEGEDDEEGAREER 463
            S   + H P  +   H++ + K    L +   TA             D K H+ SL   S++PS         G   G +   +  S GGYGWY+ +    ++SP   G++  +  G G     VRVLSRMET R D+++ +   G         E  G                                         S  ++++G R      R   HR  + EILFHL +++FSVMTRQFL+                  H +  +                  + VYAALG+GG RICQT  G QHAE+LVCLC+NQ+TF+AW+R+SAF + + D      + A   PATR AW  +E  RKWWRCL + YLA KL  LESFL A L EV  P LLM FAS   +P        +SC         GT G  G     + +I S EE+L  +KV + G   G +S     +  AREE+
Sbjct:   34 SRTPSPHPPLGEPRQHNEPKEKVKSTLSHVRLTA-------------DAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMFHSVGGYGWYEED----NVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTR------RQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRVYRNAADMFPATRGAWKALERGRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASP--SPSTTICDGLWSCPCVREMDDQGTWGANG-----ITHISSNEEMLLCQKVQEAGQFRGIES---GCDTVAREEK 483          
BLAST of NO04G01680 vs. NCBI_GenBank
Match: CBJ28523.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 9.300e-9
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 0
Query:  271 QPVYAALGVGGLRICQTACGGQHAEFLVCLCLNQRTFVAWKRFSAFVQLYHDGHVAHGAGRLPATRRAWDTMESRRKWWRCLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASS 388
            QP   A+ +G  R+ + +    HAE+ V +    +   +WKR+S F  L     ++     L  T +AW  ++  ++W+RCLE  YL  K   LE FL  FL EV +P LLM F  +
Sbjct:  193 QPEPYAVSIGSTRVRRLSPFAVHAEYQVLVSTKDQVHKSWKRYSDFKLLAEYAKISD----LRDTVKAWAHIQQTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFVGA 305          
The following BLAST results are available for this feature:
BLAST of NO04G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28563.12.200e-4232.51phox domain-containing [Nannochloropsis gaditana][more]
XP_005854074.16.400e-4232.51hypothetical protein NGA_2005800, partial [Nannoch... [more]
CBJ28523.19.300e-934.19conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009643NSK009643Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01680.1NO04G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578528gene_1956Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g53gene2014Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01680.1NO04G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01680 ID=NO04G01680|Name=NO04G01680|organism=Nannochloropsis oceanica|type=gene|length=1729bp
AGGAGGAACAGAAGGGCGGATCAAAGACGTGCCTTATTCAGGAGGCGGCC
CAGGCTGTGCGAGACCAACGCAAAAACACAAGCTAGGCGAAGGTGGGCTT
GTCAAATTTGCATATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGC
CCCAGCACCACCCTCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTG
CAAAATACACCCTCGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTT
GGATGAAGGCGACATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCT
CGTCTCCTTCGGGCGCCGGGGAGCACCAAGGCAGGAGCCAGCAGGACTTG
TCCGCGGGCGGATATGGATGGTACGACAATGAAGAGAGCATGGGCAGCAT
GAGCCCCTATGGTGGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGAT
GGGGGGCTGTGAGGGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATG
ATGGAGAGAACAGCTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAA
GGAGGACCAGGAAGAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACG
CGCACTACCATCGTCACCATCATCCCCAACACGCCCACAATCTGAGCATC
GCTGACGAGAGCAACAAGAACAGCAGCAATGGGATACGCAATATGGGCAT
CAATGGTCGGCATCGAGATCACCGGCCTGCAGACAAGGAGATTTTATTCC
ACCTCCTCAAAACCGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCA
AACGACGTCGACGAATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAAT
GCACCGGTACCAGTGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCT
ACCAAAGGTGCAAGAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTG
GGGGGGCTTCGGATTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATT
TCTCGTCTGCCTCTGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGAT
TCAGTGCTTTCGTCCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCG
GGCCGGTTGCCGGCCACGCGACGGGCATGGGACACTATGGAGTCTCGGAG
GAAGTGGTGGCGGTGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGT
TTCTCGAATCTTTCCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATT
TTGTTGATGAAGTTTGCCTCGTCGGACGTGACGCCCGAGGAGTTTGGGAA
TGGTCACAAGTTTTCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCA
CCGGTGGCGACTGCGGTTGGAGAAATGTGGTGGTCTGCAACATTCGTAGC
CAGGAAGAAGTGCTGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGG
TAGTGATAGTGAGGGGGAGGACGACGAGGAGGGAGCACGTGAAGAGAGAT
GCCTGTGAAAGAAGGATGCTGTGATTGGAAAGAGGTCATTCAGGGAAACG
AACGAGAGATGCGACCGATTATTAAAGCGGAGCATTTGTGCATTTACCAG
CGTGTAAGGCTGTTTGATATGAAATGAGACAAAGCTTGGCCTGACTAAAT
CAAGACTGTCAATGAGAAAGTCAGTGTGGCGATAATGCAGACCAACAACG
ACCATCAAATCACACAATTCAATTTCAAG
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protein sequence of NO04G01680.1

>NO04G01680.1-protein ID=NO04G01680.1-protein|Name=NO04G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MKSNASTLHLPQPQHHPHDDGRHKDLPPLQNTPSTADISAGSGLLLDEGD
IKHHMFSLDVTSSSPSGAGEHQGRSQQDLSAGGYGWYDNEESMGSMSPYG
GGEDDNDSRGSGWGAVRVLSRMETFREDMMERTAAVGEEDGKEEDKEDQE
EWRLQQPQDGSHAHYHRHHHPQHAHNLSIADESNKNSSNGIRNMGINGRH
RDHRPADKEILFHLLKTDFSVMTRQFLDANDVDEFLRRSRSNRERMHRYQ
CQHPHQHPHQSCYQRCKRKNQPVYAALGVGGLRICQTACGGQHAEFLVCL
CLNQRTFVAWKRFSAFVQLYHDGHVAHGAGRLPATRRAWDTMESRRKWWR
CLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASSDVTPEEFGNGHKF
SCFSGMAPGTHGTGGDCGWRNVVVCNIRSQEEVLREKVLQGGAVSGSDSE
GEDDEEGAREERCL*
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Synonyms
Publications