NO04G01680.1, NO04G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01680.1
Unique NameNO04G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1729
Alignment locationchr4:503678..505406 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:503678..505406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01680.1 vs.
Match: EWM28563.1 (phox domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 2.900e-42
Identity = 163/477 (34.17%), Postives = 226/477 (47.38%), Query Frame = 0 
Query:    3 SNASTLHLPQPQHHPHDDGRHKDLPPLQNTPSTADISAGSGLLLDEGDIKHHMFSLDVTSSSPSGAGEHQ-------GRSQQDL--SAGGYGWYDNEESMGSMSPYGGGEDDNDSRGSGWGA--VRVLSRMETFREDMMERTAAVGEEDGKEEDKED---QEEWRLQQPQDGSHAHYHRHHHPQHAHNLSIADESNKNSSNGIRNMGINGRHRDHRPADKEILFHLLKTDFSVMTRQFLDANDVDEFLRRSRSNRERMHRYQCQHPHQHPHQSCYQRCKRKNQPVYAALGVGGLRICQTACGGQHAEFLVCLCLNQRTFVAWKRFSAFVQLYHDGHVAH--GAGRLPATRRAWDTMESRRKWWRCLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASSDVTPEEFGNGHKFSCFSGMAPGTHGTGGDCGWRNVVVCNIRSQEEVLR-EKVLQGGAVSGSDSEGEDDEEGAREER 463
            S   + H P  +   H++ + K    L +   TAD              K H+ SL   S++PS  G          G +   +  S GGYGWY+ +    ++SP   G++  +  G G     VRVLSRMET R D+++ +   G   G  +  E     +E     P+     H   +       + S   +++  + +         R   HR  + EILFHL +++FSVMTRQFL+                  H +  +HP      S     KR+ + VYAALG+GG RICQT  G QHAE+LVCLC+NQ+TF+AW+R+SAF + + D    +   A   P TR AW  +E RRKWWRCL + YLA KL  LESFL A L EV  P LLM FAS   +P        +SC         GT G  G     + +I S EE+L  +KV + G   G +S     +  AREE+
Sbjct:    5 SRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTADA-------------KSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEED----NVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASP--SPSTTICDGLWSCPCVREMDDQGTWGANG-----ITHISSNEEMLLCQKVQEAGQFRGIES---GCDTVAREEK 454
The following BLAST results are available for this feature:
BLAST of NO04G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28563.12.900e-4234.17phox domain-containing [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01680NO04G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01680.1NO04G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01680.1.cds1NO04G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01680.1 ID=NO04G01680.1|Name=NO04G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp
AGGAGGAACAGAAGGGCGGATCAAAGACGTGCCTTATTCAGGAGGCGGCC
CAGGCTGTGCGAGACCAACGCAAAAACACAAGCTAGGCGAAGGTGGGCTT
GTCAAATTTGCATATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGC
CCCAGCACCACCCTCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTG
CAAAATACACCCTCGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTT
GGATGAAGGCGACATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCT
CGTCTCCTTCGGGCGCCGGGGAGCACCAAGGCAGGAGCCAGCAGGACTTG
TCCGCGGGCGGATATGGATGGTACGACAATGAAGAGAGCATGGGCAGCAT
GAGCCCCTATGGTGGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGAT
GGGGGGCTGTGAGGGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATG
ATGGAGAGAACAGCTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAA
GGAGGACCAGGAAGAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACG
CGCACTACCATCGTCACCATCATCCCCAACACGCCCACAATCTGAGCATC
GCTGACGAGAGCAACAAGAACAGCAGCAATGGGATACGCAATATGGGCAT
CAATGGTCGGCATCGAGATCACCGGCCTGCAGACAAGGAGATTTTATTCC
ACCTCCTCAAAACCGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCA
AACGACGTCGACGAATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAAT
GCACCGGTACCAGTGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCT
ACCAAAGGTGCAAGAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTG
GGGGGGCTTCGGATTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATT
TCTCGTCTGCCTCTGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGAT
TCAGTGCTTTCGTCCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCG
GGCCGGTTGCCGGCCACGCGACGGGCATGGGACACTATGGAGTCTCGGAG
GAAGTGGTGGCGGTGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGT
TTCTCGAATCTTTCCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATT
TTGTTGATGAAGTTTGCCTCGTCGGACGTGACGCCCGAGGAGTTTGGGAA
TGGTCACAAGTTTTCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCA
CCGGTGGCGACTGCGGTTGGAGAAATGTGGTGGTCTGCAACATTCGTAGC
CAGGAAGAAGTGCTGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGG
TAGTGATAGTGAGGGGGAGGACGACGAGGAGGGAGCACGTGAAGAGAGAT
GCCTGTGAAAGAAGGATGCTGTGATTGGAAAGAGGTCATTCAGGGAAACG
AACGAGAGATGCGACCGATTATTAAAGCGGAGCATTTGTGCATTTACCAG
CGTGTAAGGCTGTTTGATATGAAATGAGACAAAGCTTGGCCTGACTAAAT
CAAGACTGTCAATGAGAAAGTCAGTGTGGCGATAATGCAGACCAACAACG
ACCATCAAATCACACAATTCAATTTCAAG
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protein sequence of NO04G01680.1

>NO04G01680.1-protein ID=NO04G01680.1-protein|Name=NO04G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MKSNASTLHLPQPQHHPHDDGRHKDLPPLQNTPSTADISAGSGLLLDEGD
IKHHMFSLDVTSSSPSGAGEHQGRSQQDLSAGGYGWYDNEESMGSMSPYG
GGEDDNDSRGSGWGAVRVLSRMETFREDMMERTAAVGEEDGKEEDKEDQE
EWRLQQPQDGSHAHYHRHHHPQHAHNLSIADESNKNSSNGIRNMGINGRH
RDHRPADKEILFHLLKTDFSVMTRQFLDANDVDEFLRRSRSNRERMHRYQ
CQHPHQHPHQSCYQRCKRKNQPVYAALGVGGLRICQTACGGQHAEFLVCL
CLNQRTFVAWKRFSAFVQLYHDGHVAHGAGRLPATRRAWDTMESRRKWWR
CLEIRYLAQKLKFLESFLGAFLTEVSSPILLMKFASSDVTPEEFGNGHKF
SCFSGMAPGTHGTGGDCGWRNVVVCNIRSQEEVLREKVLQGGAVSGSDSE
GEDDEEGAREERCL*
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mRNA from alignment at chr4:503678..505406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01680.1 ID=NO04G01680.1|Name=NO04G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp|location=Sequence derived from alignment at chr4:503678..505406- (Nannochloropsis oceanica)
AGGAGGAACAGAAGGGCGGATCAAAGACGTGCCTTATTCAGGAGGCGGCC
CAGGCTGTGCGAGACCAACGCAAAAACACAAGCTAGGCGAAGGTGGGCTT
GTCAAATTTGCATATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGC
CCCAGCACCACCCTCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTG
CAAAATACACCCTCGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTT
GGATGAAGGCGACATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCT
CGTCTCCTTCGGGCGCCGGGGAGCACCAAGGCAGGAGCCAGCAGGACTTG
TCCGCGGGCGGATATGGATGGTACGACAATGAAGAGAGCATGGGCAGCAT
GAGCCCCTATGGTGGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGAT
GGGGGGCTGTGAGGGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATG
ATGGAGAGAACAGCTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAA
GGAGGACCAGGAAGAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACG
CGCACTACCATCGTCACCATCATCCCCAACACGCCCACAATCTGAGCATC
GCTGACGAGAGCAACAAGAACAGCAGCAATGGGATACGCAATATGGGCAT
CAATGGTCGGCATCGAGATCACCGGCCTGCAGACAAGGAGATTTTATTCC
ACCTCCTCAAAACCGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCA
AACGACGTCGACGAATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAAT
GCACCGGTACCAGTGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCT
ACCAAAGGTGCAAGAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTG
GGGGGGCTTCGGATTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATT
TCTCGTCTGCCTCTGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGAT
TCAGTGCTTTCGTCCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCG
GGCCGGTTGCCGGCCACGCGACGGGCATGGGACACTATGGAGTCTCGGAG
GAAGTGGTGGCGGTGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGT
TTCTCGAATCTTTCCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATT
TTGTTGATGAAGTTTGCCTCGTCGGACGTGACGCCCGAGGAGTTTGGGAA
TGGTCACAAGTTTTCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCA
CCGGTGGCGACTGCGGTTGGAGAAATGTGGTGGTCTGCAACATTCGTAGC
CAGGAAGAAGTGCTGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGG
TAGTGATAGTGAGGGGGAGGACGACGAGGAGGGAGCACGTGAAGAGAGAT
GCCTGTGAAAGAAGGATGCTGTGATTGGAAAGAGGTCATTCAGGGAAACG
AACGAGAGATGCGACCGATTATTAAAGCGGAGCATTTGTGCATTTACCAG
CGTGTAAGGCTGTTTGATATGAAATGAGACAAAGCTTGGCCTGACTAAAT
CAAGACTGTCAATGAGAAAGTCAGTGTGGCGATAATGCAGACCAACAACG
ACCATCAAATCACACAATTCAATTTCAAG
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Coding sequence (CDS) from alignment at chr4:503678..505406-

>NO04G01680.1 ID=NO04G01680.1|Name=NO04G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr4:503678..505406- (Nannochloropsis oceanica)
ATGAAGTCCAACGCGTCGACTTTGCACTTGCCCCAGCCCCAGCACCACCC
TCACGATGACGGCCGCCACAAAGATTTGCCGCCGCTGCAAAATACACCCT
CGACGGCGGACATCTCTGCTGGGTCTGGCCTCTTGTTGGATGAAGGCGAC
ATCAAGCACCACATGTTCTCTCTTGACGTGACGTCCTCGTCTCCTTCGGG
CGCCGGGGAGCACCAAGGCAGGAGCCAGCAGGACTTGTCCGCGGGCGGAT
ATGGATGGTACGACAATGAAGAGAGCATGGGCAGCATGAGCCCCTATGGT
GGGGGCGAGGACGACAACGATTCGAGGGGGAGTGGATGGGGGGCTGTGAG
GGTCTTGAGCCGAATGGAGACCTTTCGTGAGGACATGATGGAGAGAACAG
CTGCCGTTGGCGAGGAAGACGGGAAAGAGGAGGACAAGGAGGACCAGGAA
GAGTGGCGCCTGCAGCAGCCACAGGATGGCAGTCACGCGCACTACCATCG
TCACCATCATCCCCAACACGCCCACAATCTGAGCATCGCTGACGAGAGCA
ACAAGAACAGCAGCAATGGGATACGCAATATGGGCATCAATGGTCGGCAT
CGAGATCACCGGCCTGCAGACAAGGAGATTTTATTCCACCTCCTCAAAAC
CGACTTTTCCGTCATGACTCGCCAGTTCCTCGACGCAAACGACGTCGACG
AATTTCTTAGACGGAGCAGGAGCAACAGAGAGAGAATGCACCGGTACCAG
TGCCAGCACCCGCACCAGCACCCTCATCAGAGTTGCTACCAAAGGTGCAA
GAGAAAGAATCAACCCGTGTACGCGGCCTTGGGCGTGGGGGGGCTTCGGA
TTTGCCAAACCGCCTGCGGAGGACAGCATGCTGAATTTCTCGTCTGCCTC
TGCTTGAACCAACGGACGTTTGTGGCTTGGAAGCGATTCAGTGCTTTCGT
CCAGCTGTACCACGATGGTCATGTTGCTCACGGAGCGGGCCGGTTGCCGG
CCACGCGACGGGCATGGGACACTATGGAGTCTCGGAGGAAGTGGTGGCGG
TGCTTGGAAATCAGGTATCTGGCACAGAAGCTCAAGTTTCTCGAATCTTT
CCTAGGGGCATTCTTGACCGAAGTATCCTCTCCTATTTTGTTGATGAAGT
TTGCCTCGTCGGACGTGACGCCCGAGGAGTTTGGGAATGGTCACAAGTTT
TCATGCTTCTCAGGCATGGCTCCAGGAACGCATGGCACCGGTGGCGACTG
CGGTTGGAGAAATGTGGTGGTCTGCAACATTCGTAGCCAGGAAGAAGTGC
TGCGGGAGAAGGTTTTGCAGGGAGGGGCGGTGAGTGGTAGTGATAGTGAG
GGGGAGGACGACGAGGAGGGAGCACGTGAAGAGAGATGCCTGTGA
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Synonyms
Publications