NO04G01660, NO04G01660 (gene) Nannochloropsis oceanica

Overview
NameNO04G01660
Unique NameNO04G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1811
Alignment locationchr4:500363..502173 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:500363..502173 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G01660 vs. NCBI_GenBank
Match: EWM28537.1 (hypothetical protein Naga_100009g52 [Nannochloropsis gaditana])

HSP 1 Score: 123.2 bits (308), Expect = 2.300e-24
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 0 
Query:   75 SAAGEKSRAPLVSSLSGNNEGKLLCCAVGDVEDLITWAEDFDAQEYTSSGQRHAATLEHGQREVRAIVGQLLLSQVRAAWHHHAAQTQAEQYLFSLVMHALRMQLCSSS 184
            S  G +   PL        + ++L CAV DVE LI WA+DFD+QE+ +SGQRHAATLEHGQREVRAI+G +LLSQ+RAAWH   A  Q+E YLF+L M A+R QL S++
Sbjct:  158 SRGGTRPATPL-----KGEDDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASAT 261
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BLAST of NO04G01660 vs. NCBI_GenBank
Match: CBJ31096.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.6 bits (270), Expect = 5.800e-20
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:  104 DVEDLITWAEDFDAQEYTSSGQRHAATLEHGQREVRAIVGQLLLSQVRAAWHHHAAQTQAEQYLFSLVMHALRMQL 180
            DVE+LI W EDFD++EYT S QRHAATLEHGQRE+R+IVG +LLSQ+R  +H+H AQ Q EQYLF+LV+ A+R  +
Sbjct:  160 DVEELICWHEDFDSREYTRSSQRHAATLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRTHI 235
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BLAST of NO04G01660 vs. NCBI_GenBank
Match: CBJ48346.1 (hypothetical protein Esi_0002_0099 [Ectocarpus siliculosus])

HSP 1 Score: 93.2 bits (230), Expect = 2.500e-15
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0 
Query:   97 LLCCAVGDVEDLITWAEDFDA--QEYTSSG-QRHAATLEHGQREVRAIVGQLLLSQVRAAWHHHAAQTQAEQYLFSLVMHALRMQLCS 182
            +L C V DVEDLI + E+F A  QE  SSG QRHA+TL+ GQREVR+I+G L+LSQ+R+ WH   AQ QAEQYLF LV+ A+R  L +
Sbjct:    1 MLICDVMDVEDLIYFHEEFSASSQELDSSGSQRHASTLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAA 88
The following BLAST results are available for this feature:
BLAST of NO04G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28537.12.300e-2456.88hypothetical protein Naga_100009g52 [Nannochlorops... [more]
CBJ31096.15.800e-2065.79expressed unknown protein [Ectocarpus siliculosus][more]
CBJ48346.12.500e-1559.09hypothetical protein Esi_0002_0099 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009645NSK009645Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01660.1NO04G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578522gene_1954Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g52gene2015Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01660.1NO04G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01660 ID=NO04G01660|Name=NO04G01660|organism=Nannochloropsis oceanica|type=gene|length=1811bp
ATGCACCAGGCGACGTCCACGCATCGGTTCTGTGTCGACTGTAAACATAA
CGTCGTAACGGCTTTGGATGTCTTGACCGAACGGATCAGGGAAGAGGAGC
TCGAGAATGGAGATGAGTTAAATCGGGAGTTATTTAGTCCATTTGTCGGA
AGGATATTTGCACCAGCAGCAGAGAGAGGAGAAACGGAGGAAAGGGGGGA
GGAGGGGAGGGAGGAGGCGGTGTCAGCGGCGGGGGAGAAGAGTAGAGCGC
CGCTGGTGTCGTCATTGTCGGGGAATAATGAGGGGAAATTGTTGTGTTGT
GCGGTGGGGGATGTTGAGGATTTAATCACGTGGGCAGAGgtaaggagaga
gggaaggagggtgtgagaaaaggggaatggagtggctgagatatgtgtca
cgcactgggaaaccttcggttatattttcatctctcaacatgcattccct
gctacctcgtgtactctccctccatatcctcctgcctttctcaacccatt
atcctccctgacttggacactagctgggatgacaagagtatgagcaggtc
atgtgctaaatcttcatccttcccgctctgcctgcttttatttttcaaat
tcacaacacagGATTTTGACGCCCAAGAGTACACCTCTTCAGGGCAGCGG
CACGCCGCAACTCTCGAGCACGGGCAGAGAGAAGTACGCGCTATCGTTGG
TCAGTTGTTGTTGAGTCAGGTGCGGGCGGCGTGGCATCATCACGCTGCAC
AGACTCAGGCGGAGCAGTATCTGTTTTCACTGGTCATGCATGCGTTGAGG
ATGCAGTTGTGCAGCAGCAGTATCAATGGTAGCAATGGCAACAGTAGTAG
CAGTAATAGTGATTGTGTTGTAAAACGAATAGAATCCAACCGAAGAAGAG
GTGGAGAAGGAAAAAGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAACA
GGAGGAGTAGGGGGAGAGGTTGTCGTAGTGTCTGCTATATCTGCGGCGGA
GCTGGCAGCGACGCGGTTGCTAGAGGAGGAGGATGAGAAGGAGTGTGAGG
CGGCGGCGAAGAAGAGAAGTAAGGGCCGGAAGAGTAAAATGCGTCGAGCG
AAAGCGAAGGCCAGGAAAGCTTTGGGTGGTGGCAGGTGTAGTAGCTGCAC
TGCGACTCACACACGAAGGGAGGACGAGGAGGACGAGGAGGACGAGGACG
AGGAGAGGCAGGAAGAAGGAGAGGAGGAAAGAGGGAAGGAGTGCGAATGC
AGGGAGGAGCAGAAGGAGGCGGAGGAAAGGCAGGACGAGGCCTCCTTATT
CCCTATGCGCCGGGCACGAAAGATGGTTCAACAGCAGCACCAGCAGCAGC
AAGAACAGGACCAGCAGGACCAGCACCGTCAGCACCACCACCAAGATCTC
CAATGGCAGTCCCCGCAATCCAAGTCGAAGAGTGCTCATTCCCACCACCC
CTCGGAGAAACAGTCACGGCAACAGCAACAGCAACAGCACCCGATCGAGC
ACGAGTACGAGTACACGAACGTGGTCTTGTCCCAATCCTGCTACGACGTC
GCAGCAGAAGAGAGGCTATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGG
AGGGGGAGGGGGGGAGGCAGTATACCCGCAGTCGTTGTTGGACCAGTTGG
GCCCAGAGGAGGAGGAGGAGGAGGACCCGGATGACCCTTTGCAGCAGGAG
ATGGAAAGGTTGAAGACGAATTTGAGTGCGGAGAGCGATCGGCGCGAGCA
GCTGCGCTCGAGGCTTGCACGTAATTTTGAACAGTGGTGCTTGACGGTAG
AGGAGATGTAG
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protein sequence of NO04G01660.1

>NO04G01660.1-protein ID=NO04G01660.1-protein|Name=NO04G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MHQATSTHRFCVDCKHNVVTALDVLTERIREEELENGDELNRELFSPFVG
RIFAPAAERGETEERGEEGREEAVSAAGEKSRAPLVSSLSGNNEGKLLCC
AVGDVEDLITWAEDFDAQEYTSSGQRHAATLEHGQREVRAIVGQLLLSQV
RAAWHHHAAQTQAEQYLFSLVMHALRMQLCSSSINGSNGNSSSSNSDCVV
KRIESNRRRGGEGKRGEGGGGGGGGTGGVGGEVVVVSAISAAELAATRLL
EEEDEKECEAAAKKRSKGRKSKMRRAKAKARKALGGGRCSSCTATHTRRE
DEEDEEDEDEERQEEGEEERGKECECREEQKEAEERQDEASLFPMRRARK
MVQQQHQQQQEQDQQDQHRQHHHQDLQWQSPQSKSKSAHSHHPSEKQSRQ
QQQQQHPIEHEYEYTNVVLSQSCYDVAAEERLLRAIRGVAGRGGGGGEAV
YPQSLLDQLGPEEEEEEDPDDPLQQEMERLKTNLSAESDRREQLRSRLAR
NFEQWCLTVEEM*
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Synonyms
Publications