NO04G01660.1, NO04G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01660.1
Unique NameNO04G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr4:500363..502173 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:500363..502173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01660.1 vs.
Match: EWM28537.1 (hypothetical protein Naga_100009g52 [Nannochloropsis gaditana])

HSP 1 Score: 161.0 bits (406), Expect = 9.800e-36
Identity = 110/237 (46.41%), Postives = 144/237 (60.76%), Query Frame = 0 
Query:   75 SAAGEKSRAPLVSSLSGNNEGKLLCCAVGDVEDLITWAEDFDAQEYTSSGQRHAATLEHGQREVRAIVGQLLLSQVRAAWHHHAAQTQAEQYLFSLVMHALRMQLCSSSINGSNGNSSSSNSDCVVKRIESNRRRGGEGKRGEGGGGGGGGTGGVGGEVVVVSAISAAELAATRLLEEEDEKECEAAAKKRSKGRKSKMRRAKAKARKALGGGRCSSCTATHTRREDEEDEEDEDEE 312
            S  G +   PL        + ++L CAV DVE LI WA+DFD+QE+ +SGQRHAATLEHGQREVRAI+G +LLSQ+RAAWH   A  Q+E YLF+L M A+R QL S++        +S   D             G+G                   ++V+SA SAAE+AATRLLEE +E+E EAAA++++K RK K R+A+AK RKA GGG CSS  A  +    E D+E++D E
Sbjct:  158 SRGGTRPATPLKGE-----DDRVLWCAVEDVERLIAWAQDFDSQEFAASGQRHAATLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQLASATFGAKEYRPTSLAKD------------DGKG-------------------LMVLSAASAAEMAATRLLEEVEEEEGEAAARRKNKSRKKKERKARAKLRKAAGGGSCSSSVACDSGGLGEGDDEEDDME 358
The following BLAST results are available for this feature:
BLAST of NO04G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28537.19.800e-3646.41hypothetical protein Naga_100009g52 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01660NO04G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01660.1NO04G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01660.1.cds1NO04G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01660.1.cds2NO04G01660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01660.1 ID=NO04G01660.1|Name=NO04G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ATGCACCAGGCGACGTCCACGCATCGGTTCTGTGTCGACTGTAAACATAA
CGTCGTAACGGCTTTGGATGTCTTGACCGAACGGATCAGGGAAGAGGAGC
TCGAGAATGGAGATGAGTTAAATCGGGAGTTATTTAGTCCATTTGTCGGA
AGGATATTTGCACCAGCAGCAGAGAGAGGAGAAACGGAGGAAAGGGGGGA
GGAGGGGAGGGAGGAGGCGGTGTCAGCGGCGGGGGAGAAGAGTAGAGCGC
CGCTGGTGTCGTCATTGTCGGGGAATAATGAGGGGAAATTGTTGTGTTGT
GCGGTGGGGGATGTTGAGGATTTAATCACGTGGGCAGAGGATTTTGACGC
CCAAGAGTACACCTCTTCAGGGCAGCGGCACGCCGCAACTCTCGAGCACG
GGCAGAGAGAAGTACGCGCTATCGTTGGTCAGTTGTTGTTGAGTCAGGTG
CGGGCGGCGTGGCATCATCACGCTGCACAGACTCAGGCGGAGCAGTATCT
GTTTTCACTGGTCATGCATGCGTTGAGGATGCAGTTGTGCAGCAGCAGTA
TCAATGGTAGCAATGGCAACAGTAGTAGCAGTAATAGTGATTGTGTTGTA
AAACGAATAGAATCCAACCGAAGAAGAGGTGGAGAAGGAAAAAGAGGAGA
AGGAGGTGGTGGAGGAGGAGGAGGAACAGGAGGAGTAGGGGGAGAGGTTG
TCGTAGTGTCTGCTATATCTGCGGCGGAGCTGGCAGCGACGCGGTTGCTA
GAGGAGGAGGATGAGAAGGAGTGTGAGGCGGCGGCGAAGAAGAGAAGTAA
GGGCCGGAAGAGTAAAATGCGTCGAGCGAAAGCGAAGGCCAGGAAAGCTT
TGGGTGGTGGCAGGTGTAGTAGCTGCACTGCGACTCACACACGAAGGGAG
GACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAGGAAGAAGGAGA
GGAGGAAAGAGGGAAGGAGTGCGAATGCAGGGAGGAGCAGAAGGAGGCGG
AGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCACGAAAG
ATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAGGACCA
GCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCAATCCA
AGTCGAAGAGTGCTCATTCCCACCACCCCTCGGAGAAACAGTCACGGCAA
CAGCAACAGCAACAGCACCCGATCGAGCACGAGTACGAGTACACGAACGT
GGTCTTGTCCCAATCCTGCTACGACGTCGCAGCAGAAGAGAGGCTATTGC
GCGCGATCCGAGGCGTGGCAGGAAGAGGAGGGGGAGGGGGGGAGGCAGTA
TACCCGCAGTCGTTGTTGGACCAGTTGGGCCCAGAGGAGGAGGAGGAGGA
GGACCCGGATGACCCTTTGCAGCAGGAGATGGAAAGGTTGAAGACGAATT
TGAGTGCGGAGAGCGATCGGCGCGAGCAGCTGCGCTCGAGGCTTGCACGT
AATTTTGAACAGTGGTGCTTGACGGTAGAGGAGATGTAG
back to top

protein sequence of NO04G01660.1

>NO04G01660.1-protein ID=NO04G01660.1-protein|Name=NO04G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MHQATSTHRFCVDCKHNVVTALDVLTERIREEELENGDELNRELFSPFVG
RIFAPAAERGETEERGEEGREEAVSAAGEKSRAPLVSSLSGNNEGKLLCC
AVGDVEDLITWAEDFDAQEYTSSGQRHAATLEHGQREVRAIVGQLLLSQV
RAAWHHHAAQTQAEQYLFSLVMHALRMQLCSSSINGSNGNSSSSNSDCVV
KRIESNRRRGGEGKRGEGGGGGGGGTGGVGGEVVVVSAISAAELAATRLL
EEEDEKECEAAAKKRSKGRKSKMRRAKAKARKALGGGRCSSCTATHTRRE
DEEDEEDEDEERQEEGEEERGKECECREEQKEAEERQDEASLFPMRRARK
MVQQQHQQQQEQDQQDQHRQHHHQDLQWQSPQSKSKSAHSHHPSEKQSRQ
QQQQQHPIEHEYEYTNVVLSQSCYDVAAEERLLRAIRGVAGRGGGGGEAV
YPQSLLDQLGPEEEEEEDPDDPLQQEMERLKTNLSAESDRREQLRSRLAR
NFEQWCLTVEEM*
back to top

mRNA from alignment at chr4:500363..502173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01660.1 ID=NO04G01660.1|Name=NO04G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at chr4:500363..502173- (Nannochloropsis oceanica)
ATGCACCAGGCGACGTCCACGCATCGGTTCTGTGTCGACTGTAAACATAA
CGTCGTAACGGCTTTGGATGTCTTGACCGAACGGATCAGGGAAGAGGAGC
TCGAGAATGGAGATGAGTTAAATCGGGAGTTATTTAGTCCATTTGTCGGA
AGGATATTTGCACCAGCAGCAGAGAGAGGAGAAACGGAGGAAAGGGGGGA
GGAGGGGAGGGAGGAGGCGGTGTCAGCGGCGGGGGAGAAGAGTAGAGCGC
CGCTGGTGTCGTCATTGTCGGGGAATAATGAGGGGAAATTGTTGTGTTGT
GCGGTGGGGGATGTTGAGGATTTAATCACGTGGGCAGAGGTAAGGAGAGA
GGGAAGGAGGGTGTGAGAAAAGGGGAATGGAGTGGCTGAGATATGTGTCA
CGCACTGGGAAACCTTCGGTTATATTTTCATCTCTCAACATGCATTCCCT
GCTACCTCGTGTACTCTCCCTCCATATCCTCCTGCCTTTCTCAACCCATT
ATCCTCCCTGACTTGGACACTAGCTGGGATGACAAGAGTATGAGCAGGTC
ATGTGCTAAATCTTCATCCTTCCCGCTCTGCCTGCTTTTATTTTTCAAAT
TCACAACACAGGATTTTGACGCCCAAGAGTACACCTCTTCAGGGCAGCGG
CACGCCGCAACTCTCGAGCACGGGCAGAGAGAAGTACGCGCTATCGTTGG
TCAGTTGTTGTTGAGTCAGGTGCGGGCGGCGTGGCATCATCACGCTGCAC
AGACTCAGGCGGAGCAGTATCTGTTTTCACTGGTCATGCATGCGTTGAGG
ATGCAGTTGTGCAGCAGCAGTATCAATGGTAGCAATGGCAACAGTAGTAG
CAGTAATAGTGATTGTGTTGTAAAACGAATAGAATCCAACCGAAGAAGAG
GTGGAGAAGGAAAAAGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAACA
GGAGGAGTAGGGGGAGAGGTTGTCGTAGTGTCTGCTATATCTGCGGCGGA
GCTGGCAGCGACGCGGTTGCTAGAGGAGGAGGATGAGAAGGAGTGTGAGG
CGGCGGCGAAGAAGAGAAGTAAGGGCCGGAAGAGTAAAATGCGTCGAGCG
AAAGCGAAGGCCAGGAAAGCTTTGGGTGGTGGCAGGTGTAGTAGCTGCAC
TGCGACTCACACACGAAGGGAGGACGAGGAGGACGAGGAGGACGAGGACG
AGGAGAGGCAGGAAGAAGGAGAGGAGGAAAGAGGGAAGGAGTGCGAATGC
AGGGAGGAGCAGAAGGAGGCGGAGGAAAGGCAGGACGAGGCCTCCTTATT
CCCTATGCGCCGGGCACGAAAGATGGTTCAACAGCAGCACCAGCAGCAGC
AAGAACAGGACCAGCAGGACCAGCACCGTCAGCACCACCACCAAGATCTC
CAATGGCAGTCCCCGCAATCCAAGTCGAAGAGTGCTCATTCCCACCACCC
CTCGGAGAAACAGTCACGGCAACAGCAACAGCAACAGCACCCGATCGAGC
ACGAGTACGAGTACACGAACGTGGTCTTGTCCCAATCCTGCTACGACGTC
GCAGCAGAAGAGAGGCTATTGCGCGCGATCCGAGGCGTGGCAGGAAGAGG
AGGGGGAGGGGGGGAGGCAGTATACCCGCAGTCGTTGTTGGACCAGTTGG
GCCCAGAGGAGGAGGAGGAGGAGGACCCGGATGACCCTTTGCAGCAGGAG
ATGGAAAGGTTGAAGACGAATTTGAGTGCGGAGAGCGATCGGCGCGAGCA
GCTGCGCTCGAGGCTTGCACGTAATTTTGAACAGTGGTGCTTGACGGTAG
AGGAGATGTAG
back to top

Coding sequence (CDS) from alignment at chr4:500363..502173-

>NO04G01660.1 ID=NO04G01660.1|Name=NO04G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr4:500363..502173- (Nannochloropsis oceanica)
ATGCACCAGGCGACGTCCACGCATCGGTTCTGTGTCGACTGTAAACATAA
CGTCGTAACGGCTTTGGATGTCTTGACCGAACGGATCAGGGAAGAGGAGC
TCGAGAATGGAGATGAGTTAAATCGGGAGTTATTTAGTCCATTTGTCGGA
AGGATATTTGCACCAGCAGCAGAGAGAGGAGAAACGGAGGAAAGGGGGGA
GGAGGGGAGGGAGGAGGCGGTGTCAGCGGCGGGGGAGAAGAGTAGAGCGC
CGCTGGTGTCGTCATTGTCGGGGAATAATGAGGGGAAATTGTTGTGTTGT
GCGGTGGGGGATGTTGAGGATTTAATCACGTGGGCAGAGGATTTTGACGC
CCAAGAGTACACCTCTTCAGGGCAGCGGCACGCCGCAACTCTCGAGCACG
GGCAGAGAGAAGTACGCGCTATCGTTGGTCAGTTGTTGTTGAGTCAGGTG
CGGGCGGCGTGGCATCATCACGCTGCACAGACTCAGGCGGAGCAGTATCT
GTTTTCACTGGTCATGCATGCGTTGAGGATGCAGTTGTGCAGCAGCAGTA
TCAATGGTAGCAATGGCAACAGTAGTAGCAGTAATAGTGATTGTGTTGTA
AAACGAATAGAATCCAACCGAAGAAGAGGTGGAGAAGGAAAAAGAGGAGA
AGGAGGTGGTGGAGGAGGAGGAGGAACAGGAGGAGTAGGGGGAGAGGTTG
TCGTAGTGTCTGCTATATCTGCGGCGGAGCTGGCAGCGACGCGGTTGCTA
GAGGAGGAGGATGAGAAGGAGTGTGAGGCGGCGGCGAAGAAGAGAAGTAA
GGGCCGGAAGAGTAAAATGCGTCGAGCGAAAGCGAAGGCCAGGAAAGCTT
TGGGTGGTGGCAGGTGTAGTAGCTGCACTGCGACTCACACACGAAGGGAG
GACGAGGAGGACGAGGAGGACGAGGACGAGGAGAGGCAGGAAGAAGGAGA
GGAGGAAAGAGGGAAGGAGTGCGAATGCAGGGAGGAGCAGAAGGAGGCGG
AGGAAAGGCAGGACGAGGCCTCCTTATTCCCTATGCGCCGGGCACGAAAG
ATGGTTCAACAGCAGCACCAGCAGCAGCAAGAACAGGACCAGCAGGACCA
GCACCGTCAGCACCACCACCAAGATCTCCAATGGCAGTCCCCGCAATCCA
AGTCGAAGAGTGCTCATTCCCACCACCCCTCGGAGAAACAGTCACGGCAA
CAGCAACAGCAACAGCACCCGATCGAGCACGAGTACGAGTACACGAACGT
GGTCTTGTCCCAATCCTGCTACGACGTCGCAGCAGAAGAGAGGCTATTGC
GCGCGATCCGAGGCGTGGCAGGAAGAGGAGGGGGAGGGGGGGAGGCAGTA
TACCCGCAGTCGTTGTTGGACCAGTTGGGCCCAGAGGAGGAGGAGGAGGA
GGACCCGGATGACCCTTTGCAGCAGGAGATGGAAAGGTTGAAGACGAATT
TGAGTGCGGAGAGCGATCGGCGCGAGCAGCTGCGCTCGAGGCTTGCACGT
AATTTTGAACAGTGGTGCTTGACGGTAGAGGAGATGTAG
back to top
Synonyms
Publications