NO04G01370, NO04G01370 (gene) Nannochloropsis oceanica

Overview
NameNO04G01370
Unique NameNO04G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1561
Alignment locationchr4:425425..426985 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:425425..426985 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
GO:0005643nuclear pore
Vocabulary: INTERPRO
TermDefinition
IPR024864Nup54/Nup57/Nup44
IPR025712Nup54_alpha-helical_dom
Homology
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BLAST of NO04G01370 vs. NCBI_GenBank
Match: XP_005854248.1 (carbohydratebinding protein [Nannochloropsis gaditana CCMP526] >EKU22114.1 carbohydratebinding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.1 bits (697), Expect = 1.600e-69
Identity = 220/373 (58.98%), Postives = 247/373 (66.22%), Query Frame = 0 
Query:   84 GSTTGTATRPPFGASLTNTTGS-----FGTPATATQSSPFGLSTXTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTAPTXXXXXXXXXXXXXXXXXXELNMLREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVDYKFGFRVTDNSLGVSRQVLLTDHGAIQSKLQNQQAEMKQIQEHLQKLGVGVQALDGQAQAAKERLARCREVQMGLTNRFLVVLQRLQVLHQVNRPFSQEEKEMRGRLEGMLGRLEDAIRTLNEVGGVVEEEEADLREESRQEMTCDLAREDLLLLQQALEKQQEGLDFLTTALRRDCRGVEMLKEKLEEGR 452
            G+TTGTA+R PFGAS   +TGS     FGTPA +  SSPFG++  T              XXXXXXXXXXXXXXXXXXXXXXXXXXX                    APTX XXXXXXXXXXXX    ELNMLREA                                           VVDYKF FRVTD S GV R+V L D  AI++KL+ QQ EM+++QEH+++LG GV+AL  QA+AAKERLARCR+  M LTNRFL VLQRLQVL QVNRP SQEEK+ + RLE MLGRLE AIRTLNEVGGVVEE+E D REE RQE+TCDLARED+ LLQQALEKQQ GLDFLTTAL RDC+GVE+LKEKL+E R
Sbjct:   88 GTTTGTASRQPFGASAYGSTGSTTAGLFGTPAAS--SSPFGMTAGTSAQKPPTPGFFGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGAGAMGSMGGMP----FAAPTXQXXXXXXXXXXXXFWEQELNMLREA---------YLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVR 445
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BLAST of NO04G01370 vs. NCBI_GenBank
Match: EWM28545.1 (hypothetical protein Naga_100009g19 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 1.600e-69
Identity = 221/373 (59.25%), Postives = 248/373 (66.49%), Query Frame = 0 
Query:   84 GSTTGTATRPPFGASLTNTTGS-----FGTPATATQSSPFGLSTXTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTAPTXXXXXXXXXXXXXXXXXXELNMLREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVDYKFGFRVTDNSLGVSRQVLLTDHGAIQSKLQNQQAEMKQIQEHLQKLGVGVQALDGQAQAAKERLARCREVQMGLTNRFLVVLQRLQVLHQVNRPFSQEEKEMRGRLEGMLGRLEDAIRTLNEVGGVVEEEEADLREESRQEMTCDLAREDLLLLQQALEKQQEGLDFLTTALRRDCRGVEMLKEKLEEGR 452
            G+TTGTA+R PFGAS   +TGS     FGTPA +  SSPFG++  T            XXXXXXXXXXXXXXXXXXXX              XXXXXXX        APTXXXXXXXXXXXXXX    ELNMLREA                                           VVDYKF FRVTD S GV R+V L D  AI++KL+ QQ EM+++QEH+++LG GV+AL  QA+AAKERLARCR+  M LTNRFL VLQRLQVL QVNRP SQEEK+ + RLE MLGRLE AIRTLNEVGGVVEE+E D REE RQE+TCDLARED+ LLQQALEKQQ GLDFLTTAL RDC+GVE+LKEKL+E R
Sbjct:   88 GTTTGTASRQPFGASAYGSTGSTTAGLFGTPAAS--SSPFGMTAGTSAQKPPTPGFFGXXXXXXXXXXXXXXXXXXXXHPGAGQGPNTVGAGXXXXXXXMP----FAAPTXXXXXXXXXXXXXXFWEQELNMLREA---------YLPHDQPASQALQQQQPQLGMFASSLQPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVR 445
The following BLAST results are available for this feature:
BLAST of NO04G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854248.11.600e-6958.98carbohydratebinding protein [Nannochloropsis gadit... [more]
EWM28545.11.600e-6959.25hypothetical protein Naga_100009g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009677NSK009677Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01370.1NO04G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628103gene_1922Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g19gene2045Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01370.1NO04G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01370 ID=NO04G01370|Name=NO04G01370|organism=Nannochloropsis oceanica|type=gene|length=1561bp
ATGAGCTTTGCCGGATTCGGTGCGCCATCCGCACAGCAGCAGCAGCCAAC
AGCCAATCCATTTGGGTCCTTTGGTGCACCTGCTGCTGCCCCGTCCCCTG
GAGTCTTTGGTTCTACTGCGCCCACGAACCCATTAGGCGGgtaggtcgta
cggaaaaggaaagagggatggcattgcaggggatttgaggatgaagaggg
agagacatggatttaagcgctggaaaaaggctaaatatggatattttttg
gcaccttgacttagcgctcacttccccgcctacggcctccacactaatag
CTTCGGCCAACCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCTC
AACAGCAGCAGCAACAGTCAAAATCATCTACTTTTGGAGGTTTTGGCTCA
GCTTCCTTCGGGTCGACGACAGGCACGGCCACCCGTCCTCCTTTCGGTGC
TTCTCTCACCAACACCACAGGTTCCTTCGGCACGCCCGCAACCGCCACGC
AATCTAGCCCTTTTGGATTATCCACTACCACGCAAGGAGCCGGGACAACC
GCGCCGGGTGGGGGTCTGTTTGGTGGGATGGGGGGAGGAGGAGGCTTTGC
AGGGGGAGGGAGTGCCTTTGGCATCACAAGTGGTAATACTGCTGGGGCTG
GTCTGAGCATGGGAGGGAGTAATTTGGGGATGACGGGAGGAATGGCCAGT
GGTATGCTCGTGACCGCACCGACGCCTCAGCAGCAGGAGCAGCAACGTCA
ACTGCAGCAACGGCAGTTTTGGGAGCAGGAATTGAACATGCTCCGAGAGG
CTTACACACCCCAACAACAACAGCAGCAGCAACAGCAACAACCAGCTCAA
CAATCCGTCGGGCTCTTTGGCGCTTCTTTCCAAACCCAGCAACAGCAACA
AAACCAACAGCAACAGCAGCAGGCCGCTCGAGTTGTAGACTACAAGTTTG
GCTTTCGCGTGACAGACAATAGCCTCGGTGTCTCACGTCAAGTCCTCCTG
ACGGACCACGGCGCCATCCAAAGCAAACTTCAAAACCAACAAGCAGAGAT
GAAACAAATTCAAGAACACTTACAGAAACTGGGGGTAGGGGTCCAGGCGC
TTGATGGACAGGCACAAGCAGCGAAGGAGAGGTTGGCGCGGTGTAGGGAG
GTGCAGATGGGCCTGACGAATCGGTTTTTGGTGGTGTTGCAGCGGCTGCA
AGTGTTGCATCAGGTGAACCGTCCGTTCAGCCAGGAGGAGAAAGAGATGC
GAGGAAGGCTGGAAGGGATGTTGGGAAGATTAGAAGACGCCATTAGAACC
TTGAATGAGGTGGGGGGTGTGGTGGAGGAGGAGGAGGCGGATTTGCGGGA
AGAGTCACGGCAAGAGATGACTTGTGATTTGGCACGAGAGGACTTGCTAT
TGTTGCAGCAGGCGTTGGAGAAGCAGCAGGAGGGTTTGGATTTCTTGACG
ACGGCCTTGCGCCGGGACTGTAGGGGGGTAGAGATGCTTAAGGAGAAGTT
GGAGGAGGGGCGAGGGGGAGGGGGAGCGGGAGGAGGAGGAGCAGGAGGAG
TGCCTTTGTAA
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protein sequence of NO04G01370.1

>NO04G01370.1-protein ID=NO04G01370.1-protein|Name=NO04G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MSFAGFGAPSAQQQQPTANPFGSFGAPAAAPSPGVFGSTAPTNPLGGFGQ
PQQQQQQQQQQQPQQQQQQSKSSTFGGFGSASFGSTTGTATRPPFGASLT
NTTGSFGTPATATQSSPFGLSTTTQGAGTTAPGGGLFGGMGGGGGFAGGG
SAFGITSGNTAGAGLSMGGSNLGMTGGMASGMLVTAPTPQQQEQQRQLQQ
RQFWEQELNMLREAYTPQQQQQQQQQQPAQQSVGLFGASFQTQQQQQNQQ
QQQQAARVVDYKFGFRVTDNSLGVSRQVLLTDHGAIQSKLQNQQAEMKQI
QEHLQKLGVGVQALDGQAQAAKERLARCREVQMGLTNRFLVVLQRLQVLH
QVNRPFSQEEKEMRGRLEGMLGRLEDAIRTLNEVGGVVEEEEADLREESR
QEMTCDLAREDLLLLQQALEKQQEGLDFLTTALRRDCRGVEMLKEKLEEG
RGGGGAGGGGAGGVPL*
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Synonyms
Publications