NO04G01370.1, NO04G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01370.1
Unique NameNO04G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1401
Alignment locationchr4:425425..426985 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:425425..426985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01370.1 vs.
Match: EWM28545.1 (hypothetical protein Naga_100009g19 [Nannochloropsis gaditana])

HSP 1 Score: 416.0 bits (1068), Expect = 1.500e-112
Identity = 287/470 (61.06%), Postives = 323/470 (68.72%), Query Frame = 0 
Query:    1 MSFAGFGAPSA-QQQQPTANPFGSFGAPAAAPSPGVFGSTAPTNPLGGFG-------QPQQQQQQQQQQQPQQQQQQSKSSTFGGFGSASFGSTTGTATRPPFGASLTNTTGS-----FGTPATATQSSPFGLSTTTQGAGTTAPG--GGLFGGMGGGGGFAGGGSAFGITSGNTAGAGLSMGGSNLGMTGGMASGMLVTAPTPQQQEQQRQLQQRQFWEQELNMLREAYTPQQQQQQQQQQPAQQSVGLFGASFQTQQQQQNQQQQQQAARVVDYKFGFRVTDNSLGVSRQVLLTDHGAIQSKLQNQQAEMKQIQEHLQKLGVGVQALDGQAQAAKERLARCREVQMGLTNRFLVVLQRLQVLHQVNRPFSQEEKEMRGRLEGMLGRLEDAIRTLNEVGGVVEEEEADLREESRQEMTCDLAREDLLLLQQALEKQQEGLDFLTTALRRDCRGVEMLKEKLEEGRGGGG 456
            MSFAGFG  S  QQ   T  PF SFGAPA A    +FG+ A  +  G FG       QPQQQQQQQQQQQ QQQQQQ + S FGGFG  + G+TTGTA+R PFGAS   +TGS     FGTPA +  SSPFG++  T       PG  GG  G  GGGGGF G G       G   GAG        G  G M  GM   APTPQQQEQQRQLQQRQFWEQELNMLREAY P  Q   Q  Q  Q  +G+F +S          Q QQQ +RVVDYKF FRVTD S GV R+V L D  AI++KL+ QQ EM+++QEH+++LG GV+AL  QA+AAKERLARCR+  M LTNRFL VLQRLQVL QVNRP SQEEK+ + RLE MLGRLE AIRTLNEVGGVVEE+E D REE RQE+TCDLARED+ LLQQALEKQQ GLDFLTTAL RDC+GVE+LKEKL+E R G G
Sbjct:    1 MSFAGFGTASQPQQNSQTPKPFSSFGAPAPA---SLFGTPAAASATGAFGSTNAFGSQPQQQQQQQQQQQ-QQQQQQQQPSLFGGFGLNASGTTTGTASRQPFGASAYGSTGSTTAGLFGTPAAS--SSPFGMTAGTSAQKPPTPGFFGGTSGFGGGGGGFGGMGGV-----GRHPGAGQGPNTVGAGAMGSM-GGMPFAAPTPQQQEQQRQLQQRQFWEQELNMLREAYLPHDQPASQALQQQQPQLGMFASSL---------QPQQQPSRVVDYKFAFRVTDTSTGVPREVELRDRSAIEAKLKGQQEEMRRVQEHVERLGGGVKALYSQARAAKERLARCRDAHMELTNRFLAVLQRLQVLRQVNRPISQEEKQTKDRLESMLGRLEGAIRTLNEVGGVVEEDELDRREEPRQELTCDLAREDVHLLQQALEKQQGGLDFLTTALGRDCQGVELLKEKLDEVRAGRG 449
The following BLAST results are available for this feature:
BLAST of NO04G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28545.11.500e-11261.06hypothetical protein Naga_100009g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01370NO04G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01370.1NO04G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01370.1.cds1NO04G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01370.1.cds2NO04G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01370.1 ID=NO04G01370.1|Name=NO04G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGAGCTTTGCCGGATTCGGTGCGCCATCCGCACAGCAGCAGCAGCCAAC
AGCCAATCCATTTGGGTCCTTTGGTGCACCTGCTGCTGCCCCGTCCCCTG
GAGTCTTTGGTTCTACTGCGCCCACGAACCCATTAGGCGGCTTCGGCCAA
CCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCTCAACAGCAGCA
GCAACAGTCAAAATCATCTACTTTTGGAGGTTTTGGCTCAGCTTCCTTCG
GGTCGACGACAGGCACGGCCACCCGTCCTCCTTTCGGTGCTTCTCTCACC
AACACCACAGGTTCCTTCGGCACGCCCGCAACCGCCACGCAATCTAGCCC
TTTTGGATTATCCACTACCACGCAAGGAGCCGGGACAACCGCGCCGGGTG
GGGGTCTGTTTGGTGGGATGGGGGGAGGAGGAGGCTTTGCAGGGGGAGGG
AGTGCCTTTGGCATCACAAGTGGTAATACTGCTGGGGCTGGTCTGAGCAT
GGGAGGGAGTAATTTGGGGATGACGGGAGGAATGGCCAGTGGTATGCTCG
TGACCGCACCGACGCCTCAGCAGCAGGAGCAGCAACGTCAACTGCAGCAA
CGGCAGTTTTGGGAGCAGGAATTGAACATGCTCCGAGAGGCTTACACACC
CCAACAACAACAGCAGCAGCAACAGCAACAACCAGCTCAACAATCCGTCG
GGCTCTTTGGCGCTTCTTTCCAAACCCAGCAACAGCAACAAAACCAACAG
CAACAGCAGCAGGCCGCTCGAGTTGTAGACTACAAGTTTGGCTTTCGCGT
GACAGACAATAGCCTCGGTGTCTCACGTCAAGTCCTCCTGACGGACCACG
GCGCCATCCAAAGCAAACTTCAAAACCAACAAGCAGAGATGAAACAAATT
CAAGAACACTTACAGAAACTGGGGGTAGGGGTCCAGGCGCTTGATGGACA
GGCACAAGCAGCGAAGGAGAGGTTGGCGCGGTGTAGGGAGGTGCAGATGG
GCCTGACGAATCGGTTTTTGGTGGTGTTGCAGCGGCTGCAAGTGTTGCAT
CAGGTGAACCGTCCGTTCAGCCAGGAGGAGAAAGAGATGCGAGGAAGGCT
GGAAGGGATGTTGGGAAGATTAGAAGACGCCATTAGAACCTTGAATGAGG
TGGGGGGTGTGGTGGAGGAGGAGGAGGCGGATTTGCGGGAAGAGTCACGG
CAAGAGATGACTTGTGATTTGGCACGAGAGGACTTGCTATTGTTGCAGCA
GGCGTTGGAGAAGCAGCAGGAGGGTTTGGATTTCTTGACGACGGCCTTGC
GCCGGGACTGTAGGGGGGTAGAGATGCTTAAGGAGAAGTTGGAGGAGGGG
CGAGGGGGAGGGGGAGCGGGAGGAGGAGGAGCAGGAGGAGTGCCTTTGTA
A
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protein sequence of NO04G01370.1

>NO04G01370.1-protein ID=NO04G01370.1-protein|Name=NO04G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MSFAGFGAPSAQQQQPTANPFGSFGAPAAAPSPGVFGSTAPTNPLGGFGQ
PQQQQQQQQQQQPQQQQQQSKSSTFGGFGSASFGSTTGTATRPPFGASLT
NTTGSFGTPATATQSSPFGLSTTTQGAGTTAPGGGLFGGMGGGGGFAGGG
SAFGITSGNTAGAGLSMGGSNLGMTGGMASGMLVTAPTPQQQEQQRQLQQ
RQFWEQELNMLREAYTPQQQQQQQQQQPAQQSVGLFGASFQTQQQQQNQQ
QQQQAARVVDYKFGFRVTDNSLGVSRQVLLTDHGAIQSKLQNQQAEMKQI
QEHLQKLGVGVQALDGQAQAAKERLARCREVQMGLTNRFLVVLQRLQVLH
QVNRPFSQEEKEMRGRLEGMLGRLEDAIRTLNEVGGVVEEEEADLREESR
QEMTCDLAREDLLLLQQALEKQQEGLDFLTTALRRDCRGVEMLKEKLEEG
RGGGGAGGGGAGGVPL*
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mRNA from alignment at chr4:425425..426985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01370.1 ID=NO04G01370.1|Name=NO04G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1561bp|location=Sequence derived from alignment at chr4:425425..426985+ (Nannochloropsis oceanica)
ATGAGCTTTGCCGGATTCGGTGCGCCATCCGCACAGCAGCAGCAGCCAAC
AGCCAATCCATTTGGGTCCTTTGGTGCACCTGCTGCTGCCCCGTCCCCTG
GAGTCTTTGGTTCTACTGCGCCCACGAACCCATTAGGCGGGTAGGTCGTA
CGGAAAAGGAAAGAGGGATGGCATTGCAGGGGATTTGAGGATGAAGAGGG
AGAGACATGGATTTAAGCGCTGGAAAAAGGCTAAATATGGATATTTTTTG
GCACCTTGACTTAGCGCTCACTTCCCCGCCTACGGCCTCCACACTAATAG
CTTCGGCCAACCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCTC
AACAGCAGCAGCAACAGTCAAAATCATCTACTTTTGGAGGTTTTGGCTCA
GCTTCCTTCGGGTCGACGACAGGCACGGCCACCCGTCCTCCTTTCGGTGC
TTCTCTCACCAACACCACAGGTTCCTTCGGCACGCCCGCAACCGCCACGC
AATCTAGCCCTTTTGGATTATCCACTACCACGCAAGGAGCCGGGACAACC
GCGCCGGGTGGGGGTCTGTTTGGTGGGATGGGGGGAGGAGGAGGCTTTGC
AGGGGGAGGGAGTGCCTTTGGCATCACAAGTGGTAATACTGCTGGGGCTG
GTCTGAGCATGGGAGGGAGTAATTTGGGGATGACGGGAGGAATGGCCAGT
GGTATGCTCGTGACCGCACCGACGCCTCAGCAGCAGGAGCAGCAACGTCA
ACTGCAGCAACGGCAGTTTTGGGAGCAGGAATTGAACATGCTCCGAGAGG
CTTACACACCCCAACAACAACAGCAGCAGCAACAGCAACAACCAGCTCAA
CAATCCGTCGGGCTCTTTGGCGCTTCTTTCCAAACCCAGCAACAGCAACA
AAACCAACAGCAACAGCAGCAGGCCGCTCGAGTTGTAGACTACAAGTTTG
GCTTTCGCGTGACAGACAATAGCCTCGGTGTCTCACGTCAAGTCCTCCTG
ACGGACCACGGCGCCATCCAAAGCAAACTTCAAAACCAACAAGCAGAGAT
GAAACAAATTCAAGAACACTTACAGAAACTGGGGGTAGGGGTCCAGGCGC
TTGATGGACAGGCACAAGCAGCGAAGGAGAGGTTGGCGCGGTGTAGGGAG
GTGCAGATGGGCCTGACGAATCGGTTTTTGGTGGTGTTGCAGCGGCTGCA
AGTGTTGCATCAGGTGAACCGTCCGTTCAGCCAGGAGGAGAAAGAGATGC
GAGGAAGGCTGGAAGGGATGTTGGGAAGATTAGAAGACGCCATTAGAACC
TTGAATGAGGTGGGGGGTGTGGTGGAGGAGGAGGAGGCGGATTTGCGGGA
AGAGTCACGGCAAGAGATGACTTGTGATTTGGCACGAGAGGACTTGCTAT
TGTTGCAGCAGGCGTTGGAGAAGCAGCAGGAGGGTTTGGATTTCTTGACG
ACGGCCTTGCGCCGGGACTGTAGGGGGGTAGAGATGCTTAAGGAGAAGTT
GGAGGAGGGGCGAGGGGGAGGGGGAGCGGGAGGAGGAGGAGCAGGAGGAG
TGCCTTTGTAA
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Coding sequence (CDS) from alignment at chr4:425425..426985+

>NO04G01370.1 ID=NO04G01370.1|Name=NO04G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr4:425425..426985+ (Nannochloropsis oceanica)
ATGAGCTTTGCCGGATTCGGTGCGCCATCCGCACAGCAGCAGCAGCCAAC
AGCCAATCCATTTGGGTCCTTTGGTGCACCTGCTGCTGCCCCGTCCCCTG
GAGTCTTTGGTTCTACTGCGCCCACGAACCCATTAGGCGGCTTCGGCCAA
CCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCTCAACAGCAGCA
GCAACAGTCAAAATCATCTACTTTTGGAGGTTTTGGCTCAGCTTCCTTCG
GGTCGACGACAGGCACGGCCACCCGTCCTCCTTTCGGTGCTTCTCTCACC
AACACCACAGGTTCCTTCGGCACGCCCGCAACCGCCACGCAATCTAGCCC
TTTTGGATTATCCACTACCACGCAAGGAGCCGGGACAACCGCGCCGGGTG
GGGGTCTGTTTGGTGGGATGGGGGGAGGAGGAGGCTTTGCAGGGGGAGGG
AGTGCCTTTGGCATCACAAGTGGTAATACTGCTGGGGCTGGTCTGAGCAT
GGGAGGGAGTAATTTGGGGATGACGGGAGGAATGGCCAGTGGTATGCTCG
TGACCGCACCGACGCCTCAGCAGCAGGAGCAGCAACGTCAACTGCAGCAA
CGGCAGTTTTGGGAGCAGGAATTGAACATGCTCCGAGAGGCTTACACACC
CCAACAACAACAGCAGCAGCAACAGCAACAACCAGCTCAACAATCCGTCG
GGCTCTTTGGCGCTTCTTTCCAAACCCAGCAACAGCAACAAAACCAACAG
CAACAGCAGCAGGCCGCTCGAGTTGTAGACTACAAGTTTGGCTTTCGCGT
GACAGACAATAGCCTCGGTGTCTCACGTCAAGTCCTCCTGACGGACCACG
GCGCCATCCAAAGCAAACTTCAAAACCAACAAGCAGAGATGAAACAAATT
CAAGAACACTTACAGAAACTGGGGGTAGGGGTCCAGGCGCTTGATGGACA
GGCACAAGCAGCGAAGGAGAGGTTGGCGCGGTGTAGGGAGGTGCAGATGG
GCCTGACGAATCGGTTTTTGGTGGTGTTGCAGCGGCTGCAAGTGTTGCAT
CAGGTGAACCGTCCGTTCAGCCAGGAGGAGAAAGAGATGCGAGGAAGGCT
GGAAGGGATGTTGGGAAGATTAGAAGACGCCATTAGAACCTTGAATGAGG
TGGGGGGTGTGGTGGAGGAGGAGGAGGCGGATTTGCGGGAAGAGTCACGG
CAAGAGATGACTTGTGATTTGGCACGAGAGGACTTGCTATTGTTGCAGCA
GGCGTTGGAGAAGCAGCAGGAGGGTTTGGATTTCTTGACGACGGCCTTGC
GCCGGGACTGTAGGGGGGTAGAGATGCTTAAGGAGAAGTTGGAGGAGGGG
CGAGGGGGAGGGGGAGCGGGAGGAGGAGGAGCAGGAGGAGTGCCTTTGTA
A
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Synonyms
Publications