NO04G01280, NO04G01280 (gene) Nannochloropsis oceanica

Overview
NameNO04G01280
Unique NameNO04G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length945
Alignment locationchr4:398793..399737 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:398793..399737 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO04G01280 vs. NCBI_GenBank
Match: EWM28570.1 (hypothetical protein Naga_100009g8 [Nannochloropsis gaditana])

HSP 1 Score: 389.0 bits (998), Expect = 9.700e-105
Identity = 186/223 (83.41%), Postives = 201/223 (90.13%), Query Frame = 0 
Query:    1 MPPTTYYVENQTWHIWRECALLIPMLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASSTVRLSFDYDWCQRSDTVEQCHLLLAARGLAIATIVLEAAAVISALVVECRTARRGGFSAEYACVTLSTFHLVCAILMLVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAASTVLTDFCVIKELAHKSAYRTISPPGKTDLRSRNAR 224
            MP   YY + Q W +WRECALLIPMLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASSTVRLSFDY+WC R DT +QCHLL+ AR LA+AT+ LE AAV+  L+VECRTA R GFSAEYAC+ L+T HL+CAILMLVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSA STV+T+FCVIKELAHKSAYR+ISPPGKTDLRSRN R
Sbjct:    1 MPAALYYGDTQGWQMWRECALLIPMLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASSTVRLSFDYNWCNRDDTTDQCHLLVLARALAVATVALEVAAVLGMLIVECRTAYRAGFSAEYACMALTTSHLICAILMLVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAVSTVMTNFCVIKELAHKSAYRSISPPGKTDLRSRNVR 223
The following BLAST results are available for this feature:
BLAST of NO04G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28570.19.700e-10583.41hypothetical protein Naga_100009g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009689NSK009689Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01280.1NO04G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G01280.2NO04G01280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578383gene_1911Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g8gene2054Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01280.1NO04G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G01280.2NO04G01280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01280 ID=NO04G01280|Name=NO04G01280|organism=Nannochloropsis oceanica|type=gene|length=945bp
CAACAGAACGGGGCCGAATAATGCCACCGACTACGTACTACGTGGAGAAC
CAGACGTGGCACATTTGGAGAGAATGCGGTAAGCAAAGTCACTGACAGGA
GATTGTGTCAACCATGACCCAAAAGGCCGCCTCCTTATGCTAATCATGCT
TACATACCACACGACGCGCAGCGCTCCTGATTCCCATGCTCAGCACGGCC
CTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAGCCGCTTGACTACTCA
CACGACGCTCTGgtacgtagacctaagtcgtcatgtgtgatgtcgtgccg
cctcccccaccaaaggctggacttgccctcctcctttcccccttgaaatt
tacttctggactattgtttccttctccgtcacaacaagcaagctcaactc
cctctcaacgacacagGAGCGAAGTCCTAATCGACGACTTTTGGGGCCTC
TGGCAATGGAGCTCCGTAATGACCTCGGCCTCCTCAACCGTCCGTCTCTC
CTTCGATTACGACTGGTGCCAGCGTAGTGATACCGTTGAGCAATGCCATC
TACTTCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCGTCTTAGAAGCC
GCTGCTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACGGCCCGCCGGGG
GGGCTTCTCAGCTGAATATGCTTGTGTGACATTATCGACCTTTCACCTGG
TATGTGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGCAAGATGAGTTG
AGGGCACAAGACCTAACTTCAGGAAGGAGTAAGATCCACTTTGGCTTTTC
GTGGTGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTTGACTGATTTCT
GCGTGATCAAGGAGTTGGCACACAAATCGGCCTATCGCACGATTAGTCCT
CCAGGGAAGACGGATTTGAGGAGTCGGAATGCACGGTGATCGAGA
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protein sequence of NO04G01280.1

>NO04G01280.1-protein ID=NO04G01280.1-protein|Name=NO04G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MPPTTYYVENQTWHIWRECALLIPMLSTALLVVAVFSRDWSRLTTHTTLW
SEVLIDDFWGLWQWSSVMTSASSTVRLSFDYDWCQRSDTVEQCHLLLAAR
GLAIATIVLEAAAVISALVVECRTARRGGFSAEYACVTLSTFHLVCAILM
LVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAASTVLTDFCVIKEL
AHKSAYRTISPPGKTDLRSRNAR*
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protein sequence of NO04G01280.2

>NO04G01280.2-protein ID=NO04G01280.2-protein|Name=NO04G01280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASST
VRLSFDYDWCQRSDTVEQCHLLLAARGLAIATIVLEAAAVISALVVECRT
ARRGGFSAEYACVTLSTFHLVCAILMLVVWSSVQDELRAQDLTSGRSKIH
FGFSWWFFLVSAASTVLTDFCVIKELAHKSAYRTISPPGKTDLRSRNAR*
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Synonyms
Publications