NO04G01280.2, NO04G01280.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01280.2
Unique NameNO04G01280.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length791
Alignment locationchr4:398793..399737 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:398793..399737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01280.2 vs.
Match: EWM28570.1 (hypothetical protein Naga_100009g8 [Nannochloropsis gaditana])

HSP 1 Score: 352.4 bits (903), Expect = 9.000e-94
Identity = 171/199 (85.93%), Postives = 184/199 (92.46%), Query Frame = 0 
Query:    1 MLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASSTVRLSFDYDWCQRSDTVEQCHLLLAARGLAIATIVLEAAAVISALVVECRTARRGGFSAEYACVTLSTFHLVCAILMLVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAASTVLTDFCVIKELAHKSAYRTISPPGKTDLRSRNAR 200
            MLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASSTVRLSFDY+WC R DT +QCHLL+ AR LA+AT+ LE AAV+  L+VECRTA R GFSAEYAC+ L+T HL+CAILMLVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSA STV+T+FCVIKELAHKSAYR+ISPPGKTDLRSRN R
Sbjct:   25 MLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASSTVRLSFDYNWCNRDDTTDQCHLLVLARALAVATVALEVAAVLGMLIVECRTAYRAGFSAEYACMALTTSHLICAILMLVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAVSTVMTNFCVIKELAHKSAYRSISPPGKTDLRSRNVR 223
The following BLAST results are available for this feature:
BLAST of NO04G01280.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28570.19.000e-9485.93hypothetical protein Naga_100009g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01280NO04G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01280.2NO04G01280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01280.2.cds1NO04G01280.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01280.2.cds2NO04G01280.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01280.2 ID=NO04G01280.2|Name=NO04G01280.2|organism=Nannochloropsis oceanica|type=mRNA|length=791bp
CAACAGAACGGGGCCGAATAATGCCACCGACTACGTACTACGTGGAGAAC
CAGACGTGGCACATTTGGAGAGAATGCGGTAAGCAAAGTCACTGACAGGA
GATTGTGTCAACCATGACCCAAAAGGCCGCCTCCTTATGCTAATCATGCT
TACATACCACACGACGCGCAGCGCTCCTGATTCCCATGCTCAGCACGGCC
CTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAGCCGCTTGACTACTCA
CACGACGCTCTGGAGCGAAGTCCTAATCGACGACTTTTGGGGCCTCTGGC
AATGGAGCTCCGTAATGACCTCGGCCTCCTCAACCGTCCGTCTCTCCTTC
GATTACGACTGGTGCCAGCGTAGTGATACCGTTGAGCAATGCCATCTACT
TCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCGTCTTAGAAGCCGCTG
CTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACGGCCCGCCGGGGGGGC
TTCTCAGCTGAATATGCTTGTGTGACATTATCGACCTTTCACCTGGTATG
TGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGCAAGATGAGTTGAGGG
CACAAGACCTAACTTCAGGAAGGAGTAAGATCCACTTTGGCTTTTCGTGG
TGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTTGACTGATTTCTGCGT
GATCAAGGAGTTGGCACACAAATCGGCCTATCGCACGATTAGTCCTCCAG
GGAAGACGGATTTGAGGAGTCGGAATGCACGGTGATCGAGA
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protein sequence of NO04G01280.2

>NO04G01280.2-protein ID=NO04G01280.2-protein|Name=NO04G01280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLSTALLVVAVFSRDWSRLTTHTTLWSEVLIDDFWGLWQWSSVMTSASST
VRLSFDYDWCQRSDTVEQCHLLLAARGLAIATIVLEAAAVISALVVECRT
ARRGGFSAEYACVTLSTFHLVCAILMLVVWSSVQDELRAQDLTSGRSKIH
FGFSWWFFLVSAASTVLTDFCVIKELAHKSAYRTISPPGKTDLRSRNAR*
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mRNA from alignment at chr4:398793..399737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01280.2 ID=NO04G01280.2|Name=NO04G01280.2|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at chr4:398793..399737+ (Nannochloropsis oceanica)
CAACAGAACGGGGCCGAATAATGCCACCGACTACGTACTACGTGGAGAAC
CAGACGTGGCACATTTGGAGAGAATGCGGTAAGCAAAGTCACTGACAGGA
GATTGTGTCAACCATGACCCAAAAGGCCGCCTCCTTATGCTAATCATGCT
TACATACCACACGACGCGCAGCGCTCCTGATTCCCATGCTCAGCACGGCC
CTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAGCCGCTTGACTACTCA
CACGACGCTCTGGTACGTAGACCTAAGTCGTCATGTGTGATGTCGTGCCG
CCTCCCCCACCAAAGGCTGGACTTGCCCTCCTCCTTTCCCCCTTGAAATT
TACTTCTGGACTATTGTTTCCTTCTCCGTCACAACAAGCAAGCTCAACTC
CCTCTCAACGACACAGGAGCGAAGTCCTAATCGACGACTTTTGGGGCCTC
TGGCAATGGAGCTCCGTAATGACCTCGGCCTCCTCAACCGTCCGTCTCTC
CTTCGATTACGACTGGTGCCAGCGTAGTGATACCGTTGAGCAATGCCATC
TACTTCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCGTCTTAGAAGCC
GCTGCTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACGGCCCGCCGGGG
GGGCTTCTCAGCTGAATATGCTTGTGTGACATTATCGACCTTTCACCTGG
TATGTGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGCAAGATGAGTTG
AGGGCACAAGACCTAACTTCAGGAAGGAGTAAGATCCACTTTGGCTTTTC
GTGGTGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTTGACTGATTTCT
GCGTGATCAAGGAGTTGGCACACAAATCGGCCTATCGCACGATTAGTCCT
CCAGGGAAGACGGATTTGAGGAGTCGGAATGCACGGTGATCGAGA
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Coding sequence (CDS) from alignment at chr4:398793..399737+

>NO04G01280.2 ID=NO04G01280.2|Name=NO04G01280.2|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr4:398793..399737+ (Nannochloropsis oceanica)
ATGCTCAGCACGGCCCTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAG
CCGCTTGACTACTCACACGACGCTCTGGAGCGAAGTCCTAATCGACGACT
TTTGGGGCCTCTGGCAATGGAGCTCCGTAATGACCTCGGCCTCCTCAACC
GTCCGTCTCTCCTTCGATTACGACTGGTGCCAGCGTAGTGATACCGTTGA
GCAATGCCATCTACTTCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCG
TCTTAGAAGCCGCTGCTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACG
GCCCGCCGGGGGGGCTTCTCAGCTGAATATGCTTGTGTGACATTATCGAC
CTTTCACCTGGTATGTGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGC
AAGATGAGTTGAGGGCACAAGACCTAACTTCAGGAAGGAGTAAGATCCAC
TTTGGCTTTTCGTGGTGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTT
GACTGATTTCTGCGTGATCAAGGAGTTGGCACACAAATCGGCCTATCGCA
CGATTAGTCCTCCAGGGAAGACGGATTTGAGGAGTCGGAATGCACGGTGA
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Synonyms
Publications