NO04G01200, NO04G01200 (gene) Nannochloropsis oceanica

Overview
NameNO04G01200
Unique NameNO04G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2164
Alignment locationchr4:376866..379029 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:376866..379029 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G01200 vs. NCBI_GenBank
Match: EWM28523.1 (hypothetical protein Naga_100009g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 2.700e-8
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 0 
Query:   84 DDQRIRLTRQLGKLLQKFIESGSHVMFSVQLEEAFSLHVEREVAA-----ATAAAAQ--------TKMGKKAAATAKSFV---ALYREKAAVLVSRLRFSRKKKLAKLVR 178
            +DQRI LTR+LGK+LQK IESG H++++ QLEEAF++HVERE  A     AT A+ Q           G ++AA++   V    LY + +++L+ RLR   +KKL +L++
Sbjct:  113 EDQRIELTRRLGKVLQKLIESGPHILYATQLEEAFTMHVERERLARSQRDATVASQQDHSEGPGRRSEGTRSAASSVVTVGLPTLYSDLSSILLDRLRHGPRKKLRRLLQ 222
The following BLAST results are available for this feature:
BLAST of NO04G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28523.12.700e-843.64hypothetical protein Naga_100009g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009698NSK009698Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01200.1NO04G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636983gene_1902Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g1gene2061Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01200.1NO04G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01200 ID=NO04G01200|Name=NO04G01200|organism=Nannochloropsis oceanica|type=gene|length=2164bp
ATGGCGGTGAGCAGCGATGATGAGGAGAGCGATTACACCGACAGCTCTAG
CGAGGACGACGGCGCAGTCCCTCCCCCAATACCACACCGATCACACCATC
CAGGCAGAGCGGGTGGATTTCAACAAACCATGGTGATTGATTCGGACGAT
GCAGGAGTAGGAGAGGGGGAAGGCGAAGAGGAGGAGGAGGAGGACGAGGA
AGAAGAGGAAGAAGAGGAACGGGAAGAAGGGGGGGGAGGGGGGGAGGTGG
ACGATCAACGGATACGCCTGACGCGGCAATTGGGCAAACTCTTGCAGAAA
TTTATTGAGAGTGGGTCGCACGTCATGTTCTCCGTCCAATTGGAGGAAGC
GTTCTCGCTGCACGTCGAGCGGGAGGTAGCAGCAGCGACAGCAGCTGCAG
CACAGACGAAGATGGGAAAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTG
GCCCTATATCGAGAAAAGGCCGCCGTATTAGTGTCACGCTTGAGGTTTAG
CAGGAAGAAAAAGCTGGCGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGA
TTGCAAgtaagtactccaaggtggggggaaggagggagggaaggagggag
ggaaggaggatggtgctgctgaggatgtaaagaaaaagacgaaaaagggg
aatgcagcagtagcaggtggaggaggaagagatacaccgttgaaaagagg
gaggggaaggccaaagagtgccccagcagGTGTAGCAGCAGCAGCAGAAG
GAGGATCGTCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGGA
GGAGAGGGGGGACGAGGAAGACGAGGTGGAAAGATGGAGCCGGGGAAAGG
TGGAAAGACAAAGGTGGCTCATGGGGGGGAGGGGAAGAAGAGGAGGAAGG
CTGGTAATGGCGTGGAAGGTAACAGCGAGGACGAGGAGCACAGGGAAGCG
GGGGAGGGGGCAGTCGGACCACGGGCGAAGAAGACAAAGTGGGGTGCTGG
CAGTGGAGGCAGAAAGGGTGCCAAGGCAGGAGCAGGAGCAGGAATAGTCG
TCAGGCCTGAGAGCAGCAGCTCTACCGGAGGAGGAGGAGCGGGGGAAGGA
GGAGGGGTGAAGGAGCCGCTTATTCCTTTAGCTCGTTCTGCCAAAATGCT
CCCACTTCCCACTAAGCCGGCCGCTCCTGCTGCTGCTCCTGCTACTGCTA
CTGCCGCTATTGGAGCGGTGGATAGGAAGGGGATGGGCAGCAGGGGAGGC
GGCAACAGCAGCACCAGTTTGTCGTCCATGGCAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGCTCACAGTAATGGTGGCGCCGATGGTACTCCCCGCCACCCTCCGTTC
TACTCCTCCACCTCCACCACCACCACACATCACCTTAAGAGTAGCACGTC
TTCCTCCTCCCCTATTCCTCCCCCTCCTCGGCGTCAACACGAAACGGCTC
GCGAACGCCAAGACAGGCACAAGGCTCGTCTAGCGGCCAAGGAGGAGGAG
AGGAGAAAACAACTCCAGATTAGACGAGAGGCAGAACGGCGAATGCATTC
AAATTTAAAACCCACGGTTATTTTTGACGGTACTTTGGAAGCGTTGCTCA
GGCTGAGGGATGGGGAGGGAGGGGTTGGCGGGCTGAAAGGgttggacgag
tgggggacctttaggataatgagccaagaggagaggagaggcgagggaaa
gaggagagatggaaggaggacggaagcgaggagggaggcagcggggcggc
tgagtggtggagggggtattactccagctagaagaggtcgagaacgagga
gctaccagcgatgggagtaacacgacgcattgtgcagCGACTCCGCCTGT
TTCTCGTGCTGCAGCAGTGGCACCACCACCTTCTCGCCCTCCTCCTCCTC
CTTCTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCC
TCCTGCCCCTTTTGTTTCTTCATATTTTTCTTCTACTTCGCGGCCATCCT
CGTCTTTGCCTTCATATTCGGGGGCTCGCCATTGAGGGAGGGAGGGAGGG
AGGGAGGGAAGTAA
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protein sequence of NO04G01200.1

>NO04G01200.1-protein ID=NO04G01200.1-protein|Name=NO04G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MAVSSDDEESDYTDSSSEDDGAVPPPIPHRSHHPGRAGGFQQTMVIDSDD
AGVGEGEGEEEEEEDEEEEEEEEREEGGGGGEVDDQRIRLTRQLGKLLQK
FIESGSHVMFSVQLEEAFSLHVEREVAAATAAAAQTKMGKKAAATAKSFV
ALYREKAAVLVSRLRFSRKKKLAKLVRGKEWGKIASVAAAAEGGSSSSSA
AAAAAAGAGGEGGRGRRGGKMEPGKGGKTKVAHGGEGKKRRKAGNGVEGN
SEDEEHREAGEGAVGPRAKKTKWGAGSGGRKGAKAGAGAGIVVRPESSSS
TGGGGAGEGGGVKEPLIPLARSAKMLPLPTKPAAPAAAPATATAAIGAVD
RKGMGSRGGGNSSTSLSSMAGEGGGGGGGGGGGGGGGGGGGGGAHSNGGA
DGTPRHPPFYSSTSTTTTHHLKSSTSSSSPIPPPPRRQHETARERQDRHK
ARLAAKEEERRKQLQIRREAERRMHSNLKPTVIFDGTLEALLRLRDGEGG
VGGLKGDSACFSCCSSGTTTFSPSSSSFSSASSSSSSSSSSSSSSSFFFF
FFFSSSSSSSSCPFCFFIFFFYFAAILVFAFIFGGSPLREGGREGGK*
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Synonyms
Publications