NO04G01200.1, NO04G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01200.1
Unique NameNO04G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1794
Alignment locationchr4:376866..379029 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:376866..379029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01200NO04G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01200.1NO04G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01200.1.cds1NO04G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01200.1.cds2NO04G01200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01200.1.cds3NO04G01200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01200.1 ID=NO04G01200.1|Name=NO04G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1794bp
ATGGCGGTGAGCAGCGATGATGAGGAGAGCGATTACACCGACAGCTCTAG
CGAGGACGACGGCGCAGTCCCTCCCCCAATACCACACCGATCACACCATC
CAGGCAGAGCGGGTGGATTTCAACAAACCATGGTGATTGATTCGGACGAT
GCAGGAGTAGGAGAGGGGGAAGGCGAAGAGGAGGAGGAGGAGGACGAGGA
AGAAGAGGAAGAAGAGGAACGGGAAGAAGGGGGGGGAGGGGGGGAGGTGG
ACGATCAACGGATACGCCTGACGCGGCAATTGGGCAAACTCTTGCAGAAA
TTTATTGAGAGTGGGTCGCACGTCATGTTCTCCGTCCAATTGGAGGAAGC
GTTCTCGCTGCACGTCGAGCGGGAGGTAGCAGCAGCGACAGCAGCTGCAG
CACAGACGAAGATGGGAAAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTG
GCCCTATATCGAGAAAAGGCCGCCGTATTAGTGTCACGCTTGAGGTTTAG
CAGGAAGAAAAAGCTGGCGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGA
TTGCAAGTGTAGCAGCAGCAGCAGAAGGAGGATCGTCATCATCATCAGCA
GCAGCAGCAGCAGCAGCAGGAGCAGGAGGAGAGGGGGGACGAGGAAGACG
AGGTGGAAAGATGGAGCCGGGGAAAGGTGGAAAGACAAAGGTGGCTCATG
GGGGGGAGGGGAAGAAGAGGAGGAAGGCTGGTAATGGCGTGGAAGGTAAC
AGCGAGGACGAGGAGCACAGGGAAGCGGGGGAGGGGGCAGTCGGACCACG
GGCGAAGAAGACAAAGTGGGGTGCTGGCAGTGGAGGCAGAAAGGGTGCCA
AGGCAGGAGCAGGAGCAGGAATAGTCGTCAGGCCTGAGAGCAGCAGCTCT
ACCGGAGGAGGAGGAGCGGGGGAAGGAGGAGGGGTGAAGGAGCCGCTTAT
TCCTTTAGCTCGTTCTGCCAAAATGCTCCCACTTCCCACTAAGCCGGCCG
CTCCTGCTGCTGCTCCTGCTACTGCTACTGCCGCTATTGGAGCGGTGGAT
AGGAAGGGGATGGGCAGCAGGGGAGGCGGCAACAGCAGCACCAGTTTGTC
GTCCATGGCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCACAGTAATGGTGGCGCC
GATGGTACTCCCCGCCACCCTCCGTTCTACTCCTCCACCTCCACCACCAC
CACACATCACCTTAAGAGTAGCACGTCTTCCTCCTCCCCTATTCCTCCCC
CTCCTCGGCGTCAACACGAAACGGCTCGCGAACGCCAAGACAGGCACAAG
GCTCGTCTAGCGGCCAAGGAGGAGGAGAGGAGAAAACAACTCCAGATTAG
ACGAGAGGCAGAACGGCGAATGCATTCAAATTTAAAACCCACGGTTATTT
TTGACGGTACTTTGGAAGCGTTGCTCAGGCTGAGGGATGGGGAGGGAGGG
GTTGGCGGGCTGAAAGGCGACTCCGCCTGTTTCTCGTGCTGCAGCAGTGG
CACCACCACCTTCTCGCCCTCCTCCTCCTCCTTCTCCTCCGCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTC
TTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTGCCCCTTTTGTTTCTT
CATATTTTTCTTCTACTTCGCGGCCATCCTCGTCTTTGCCTTCATATTCG
GGGGCTCGCCATTGAGGGAGGGAGGGAGGGAGGGAGGGAAGTAA
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protein sequence of NO04G01200.1

>NO04G01200.1-protein ID=NO04G01200.1-protein|Name=NO04G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MAVSSDDEESDYTDSSSEDDGAVPPPIPHRSHHPGRAGGFQQTMVIDSDD
AGVGEGEGEEEEEEDEEEEEEEEREEGGGGGEVDDQRIRLTRQLGKLLQK
FIESGSHVMFSVQLEEAFSLHVEREVAAATAAAAQTKMGKKAAATAKSFV
ALYREKAAVLVSRLRFSRKKKLAKLVRGKEWGKIASVAAAAEGGSSSSSA
AAAAAAGAGGEGGRGRRGGKMEPGKGGKTKVAHGGEGKKRRKAGNGVEGN
SEDEEHREAGEGAVGPRAKKTKWGAGSGGRKGAKAGAGAGIVVRPESSSS
TGGGGAGEGGGVKEPLIPLARSAKMLPLPTKPAAPAAAPATATAAIGAVD
RKGMGSRGGGNSSTSLSSMAGEGGGGGGGGGGGGGGGGGGGGGAHSNGGA
DGTPRHPPFYSSTSTTTTHHLKSSTSSSSPIPPPPRRQHETARERQDRHK
ARLAAKEEERRKQLQIRREAERRMHSNLKPTVIFDGTLEALLRLRDGEGG
VGGLKGDSACFSCCSSGTTTFSPSSSSFSSASSSSSSSSSSSSSSSFFFF
FFFSSSSSSSSCPFCFFIFFFYFAAILVFAFIFGGSPLREGGREGGK*
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mRNA from alignment at chr4:376866..379029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01200.1 ID=NO04G01200.1|Name=NO04G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at chr4:376866..379029- (Nannochloropsis oceanica)
ATGGCGGTGAGCAGCGATGATGAGGAGAGCGATTACACCGACAGCTCTAG
CGAGGACGACGGCGCAGTCCCTCCCCCAATACCACACCGATCACACCATC
CAGGCAGAGCGGGTGGATTTCAACAAACCATGGTGATTGATTCGGACGAT
GCAGGAGTAGGAGAGGGGGAAGGCGAAGAGGAGGAGGAGGAGGACGAGGA
AGAAGAGGAAGAAGAGGAACGGGAAGAAGGGGGGGGAGGGGGGGAGGTGG
ACGATCAACGGATACGCCTGACGCGGCAATTGGGCAAACTCTTGCAGAAA
TTTATTGAGAGTGGGTCGCACGTCATGTTCTCCGTCCAATTGGAGGAAGC
GTTCTCGCTGCACGTCGAGCGGGAGGTAGCAGCAGCGACAGCAGCTGCAG
CACAGACGAAGATGGGAAAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTG
GCCCTATATCGAGAAAAGGCCGCCGTATTAGTGTCACGCTTGAGGTTTAG
CAGGAAGAAAAAGCTGGCGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGA
TTGCAAGTAAGTACTCCAAGGTGGGGGGAAGGAGGGAGGGAAGGAGGGAG
GGAAGGAGGATGGTGCTGCTGAGGATGTAAAGAAAAAGACGAAAAAGGGG
AATGCAGCAGTAGCAGGTGGAGGAGGAAGAGATACACCGTTGAAAAGAGG
GAGGGGAAGGCCAAAGAGTGCCCCAGCAGGTGTAGCAGCAGCAGCAGAAG
GAGGATCGTCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGGA
GGAGAGGGGGGACGAGGAAGACGAGGTGGAAAGATGGAGCCGGGGAAAGG
TGGAAAGACAAAGGTGGCTCATGGGGGGGAGGGGAAGAAGAGGAGGAAGG
CTGGTAATGGCGTGGAAGGTAACAGCGAGGACGAGGAGCACAGGGAAGCG
GGGGAGGGGGCAGTCGGACCACGGGCGAAGAAGACAAAGTGGGGTGCTGG
CAGTGGAGGCAGAAAGGGTGCCAAGGCAGGAGCAGGAGCAGGAATAGTCG
TCAGGCCTGAGAGCAGCAGCTCTACCGGAGGAGGAGGAGCGGGGGAAGGA
GGAGGGGTGAAGGAGCCGCTTATTCCTTTAGCTCGTTCTGCCAAAATGCT
CCCACTTCCCACTAAGCCGGCCGCTCCTGCTGCTGCTCCTGCTACTGCTA
CTGCCGCTATTGGAGCGGTGGATAGGAAGGGGATGGGCAGCAGGGGAGGC
GGCAACAGCAGCACCAGTTTGTCGTCCATGGCAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGCTCACAGTAATGGTGGCGCCGATGGTACTCCCCGCCACCCTCCGTTC
TACTCCTCCACCTCCACCACCACCACACATCACCTTAAGAGTAGCACGTC
TTCCTCCTCCCCTATTCCTCCCCCTCCTCGGCGTCAACACGAAACGGCTC
GCGAACGCCAAGACAGGCACAAGGCTCGTCTAGCGGCCAAGGAGGAGGAG
AGGAGAAAACAACTCCAGATTAGACGAGAGGCAGAACGGCGAATGCATTC
AAATTTAAAACCCACGGTTATTTTTGACGGTACTTTGGAAGCGTTGCTCA
GGCTGAGGGATGGGGAGGGAGGGGTTGGCGGGCTGAAAGGGTTGGACGAG
TGGGGGACCTTTAGGATAATGAGCCAAGAGGAGAGGAGAGGCGAGGGAAA
GAGGAGAGATGGAAGGAGGACGGAAGCGAGGAGGGAGGCAGCGGGGCGGC
TGAGTGGTGGAGGGGGTATTACTCCAGCTAGAAGAGGTCGAGAACGAGGA
GCTACCAGCGATGGGAGTAACACGACGCATTGTGCAGCGACTCCGCCTGT
TTCTCGTGCTGCAGCAGTGGCACCACCACCTTCTCGCCCTCCTCCTCCTC
CTTCTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCC
TCCTGCCCCTTTTGTTTCTTCATATTTTTCTTCTACTTCGCGGCCATCCT
CGTCTTTGCCTTCATATTCGGGGGCTCGCCATTGAGGGAGGGAGGGAGGG
AGGGAGGGAAGTAA
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Coding sequence (CDS) from alignment at chr4:376866..379029-

>NO04G01200.1 ID=NO04G01200.1|Name=NO04G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr4:376866..379029- (Nannochloropsis oceanica)
ATGGCGGTGAGCAGCGATGATGAGGAGAGCGATTACACCGACAGCTCTAG
CGAGGACGACGGCGCAGTCCCTCCCCCAATACCACACCGATCACACCATC
CAGGCAGAGCGGGTGGATTTCAACAAACCATGGTGATTGATTCGGACGAT
GCAGGAGTAGGAGAGGGGGAAGGCGAAGAGGAGGAGGAGGAGGACGAGGA
AGAAGAGGAAGAAGAGGAACGGGAAGAAGGGGGGGGAGGGGGGGAGGTGG
ACGATCAACGGATACGCCTGACGCGGCAATTGGGCAAACTCTTGCAGAAA
TTTATTGAGAGTGGGTCGCACGTCATGTTCTCCGTCCAATTGGAGGAAGC
GTTCTCGCTGCACGTCGAGCGGGAGGTAGCAGCAGCGACAGCAGCTGCAG
CACAGACGAAGATGGGAAAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTG
GCCCTATATCGAGAAAAGGCCGCCGTATTAGTGTCACGCTTGAGGTTTAG
CAGGAAGAAAAAGCTGGCGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGA
TTGCAAGTGTAGCAGCAGCAGCAGAAGGAGGATCGTCATCATCATCAGCA
GCAGCAGCAGCAGCAGCAGGAGCAGGAGGAGAGGGGGGACGAGGAAGACG
AGGTGGAAAGATGGAGCCGGGGAAAGGTGGAAAGACAAAGGTGGCTCATG
GGGGGGAGGGGAAGAAGAGGAGGAAGGCTGGTAATGGCGTGGAAGGTAAC
AGCGAGGACGAGGAGCACAGGGAAGCGGGGGAGGGGGCAGTCGGACCACG
GGCGAAGAAGACAAAGTGGGGTGCTGGCAGTGGAGGCAGAAAGGGTGCCA
AGGCAGGAGCAGGAGCAGGAATAGTCGTCAGGCCTGAGAGCAGCAGCTCT
ACCGGAGGAGGAGGAGCGGGGGAAGGAGGAGGGGTGAAGGAGCCGCTTAT
TCCTTTAGCTCGTTCTGCCAAAATGCTCCCACTTCCCACTAAGCCGGCCG
CTCCTGCTGCTGCTCCTGCTACTGCTACTGCCGCTATTGGAGCGGTGGAT
AGGAAGGGGATGGGCAGCAGGGGAGGCGGCAACAGCAGCACCAGTTTGTC
GTCCATGGCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCACAGTAATGGTGGCGCC
GATGGTACTCCCCGCCACCCTCCGTTCTACTCCTCCACCTCCACCACCAC
CACACATCACCTTAAGAGTAGCACGTCTTCCTCCTCCCCTATTCCTCCCC
CTCCTCGGCGTCAACACGAAACGGCTCGCGAACGCCAAGACAGGCACAAG
GCTCGTCTAGCGGCCAAGGAGGAGGAGAGGAGAAAACAACTCCAGATTAG
ACGAGAGGCAGAACGGCGAATGCATTCAAATTTAAAACCCACGGTTATTT
TTGACGGTACTTTGGAAGCGTTGCTCAGGCTGAGGGATGGGGAGGGAGGG
GTTGGCGGGCTGAAAGGCGACTCCGCCTGTTTCTCGTGCTGCAGCAGTGG
CACCACCACCTTCTCGCCCTCCTCCTCCTCCTTCTCCTCCGCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTC
TTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTGCCCCTTTTGTTTCTT
CATATTTTTCTTCTACTTCGCGGCCATCCTCGTCTTTGCCTTCATATTCG
GGGGCTCGCCATTGAGGGAGGGAGGGAGGGAGGGAGGGAAGTAA
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Synonyms
Publications