NO04G01180, NO04G01180 (gene) Nannochloropsis oceanica

Overview
NameNO04G01180
Unique NameNO04G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr4:373579..374958 -

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Properties
Property NameValue
DescriptionRibosome maturation protein sbds
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:373579..374958 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
GO:0042254ribosome biogenesis
GO:0008150biological_process
Vocabulary: INTERPRO
TermDefinition
IPR036786Ribosome_mat_SBDS_N_sf
IPR037188Sdo1/SBDS_central_sf
IPR002140Ribosome_maturation_pr_SBDS
IPR019783Ribosome_mat_SBDS_N
IPR018978Ribosome_mat_SBDS_C
Homology
BLAST of NO04G01180 vs. NCBI_GenBank
Match: EWM28517.1 (ribosome maturation protein sbds [Nannochloropsis gaditana])

HSP 1 Score: 511.1 bits (1315), Expect = 3.500e-141
Identity = 315/460 (68.48%), Postives = 343/460 (74.57%), Query Frame = 0
Query:    1 MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGSLQVLELNVQQEGEADVDFEIARKEMMKRHQQEEIA-AKAVKAVEARDDVQEESGMEKEEDKDVLEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASLVSTTISNTSGGREKMVLTWQKKSAGGTRLACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDADEMFFQDRGV 460
            MSRRIGQPVNQVRLTNVAMVR+HKGGKRFEIACYRNKVLSWRQGVE DIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQ++VEALLR ILEKGEYHPSDKEREAM ES YRDIATIVA KSVNP SNRPYTV MILSGMK+IHFAVNPTR AKQQALEVI++L+DVMPL+RAKM L+ VCPT EDLA+V+ G+   GID    EA G ++E+DLLVDPG+FR VDELVRG  +G+L VLELNVQQEGEADVD EIARK  M++ Q++E A A   KA         E   E+E  K+  +EG                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      W+K   G  RLACNTCRVDF DAK YREHYRTDWHRYNLKLKEKGGGPV E EFE+VDADEMF   R +
Sbjct:    1 MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEADVDLEIARKAAMRKEQRDESAVANTCKAF--------EEAQEREGRKETDQEGEAGFLRGANVKAHGDEDSVVEGAEEHVDKQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEKARPGSNRLACNTCRVDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYRDI 452          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: CBN77759.1 (SBDS domain, zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 298.5 bits (763), Expect = 3.500e-77
Identity = 261/491 (53.16%), Postives = 312/491 (63.54%), Query Frame = 0
Query:    1 MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDT----AAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARG--SLQVLELNVQQEGEADVDFEIARKEMMKRHQQEE-----------------------------IAAKAVKAVEARDDVQEESGMEKEEDKDVLEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASLVSTTISNTSGGREKMVLTWQKKSAGGTRLACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDADEMFFQD 457
            MSR I QPVNQVRLTNVA+VR++K GKRFEIACYRNKV++WR  VETD+DEVLQ  ++F NVSKGVLA +KDLM  FG DN     R IL+KGE   SDKER+  LES +RD+ATIV+EK VNPASNRPYTV MI   M+++HF+ +PTR+AKQQALEVIKKL++VMP+DRAKM LR    T ED   +   L ++G+D+      A A  + + +D LVDPG++R V+E VR  A G  +L+VL+L+VQQEGEAD+D E+ RK ++    + E                                                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                               RL C TC + F D   +REHY++D HRYNLKLK KGG PV E+EF +VDA++ F  D
Sbjct:    1 MSRAITQPVNQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLESCRIILDKGEMQVSDKERQVALESVFRDVATIVSEKCVNPASNRPYTVSMIEKAMRDVHFSAHPTRSAKQQALEVIKKLKEVMPIDRAKMKLRIT--TDEDSTPLKEALGELGVDSFENGGGAAAGSSGEVLDFLVDPGLYRDVEEAVRTVASGRCALEVLQLSVQQEGEADMDVELMRKGLLAVKLKGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGKAKRRLGCITCGLTFTDTGAHREHYKSDLHRYNLKLKMKGGAPVSEEEFRLVDANDFFHSD 489          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: ACQ59017.1 (Ribosome maturation protein SBDS [Anoplopoma fimbria])

HSP 1 Score: 254.2 bits (648), Expect = 7.600e-64
Identity = 133/243 (54.73%), Postives = 171/243 (70.37%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV++WR G E D+DEVLQTH +F+NVSKG +A  +DL   FG D++  + +QIL KGE   SDKER   LE+T+RDIATIVAEK VNP + RPYTV +I   MK+IH++V P +++KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E    + EM  LVDPG FR +DEL+R     RGSL+VL L   +EGE
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVVNWRAGAEKDLDEVLQTHTVFVNVSKGQVAKKEDLTKSFGTDDLTEICKQILAKGELQVSDKERHTQLETTFRDIATIVAEKCVNPETKRPYTVNLIEGAMKDIHYSVKPNKSSKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKKLKEKLKPLLQVVESEDFDEQLEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGE 246          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: ACQ58627.1 (Ribosome maturation protein SBDS [Anoplopoma fimbria])

HSP 1 Score: 253.4 bits (646), Expect = 1.300e-63
Identity = 132/245 (53.88%), Postives = 172/245 (70.20%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGEAD 251
            P NQ+RLTNVA+VRM +GGKRFEIACY+NKV++WR G E D+DEVLQTH +F+NVSKG +A  +DL   FG D++  + +QIL KGE   SDKER   LE+T+RDIATIVAEK VNP + RPYTV +I   MK+IH++V P +++KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E    + EM  LVDPG FR +DEL+R     RGSL+VL L   +EGE +
Sbjct:    6 PTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVNWRAGAEKDLDEVLQTHTVFVNVSKGQVAKKEDLTKSFGTDDLTEICKQILAKGELQVSDKERHTQLETTFRDIATIVAEKCVNPETERPYTVNLIEGAMKDIHYSVKPNKSSKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKKLKEKLKPLLQVVESEDFDEQLEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGEEE 248          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_003459489.1 (PREDICTED: ribosome maturation protein SBDS [Oreochromis niloticus])

HSP 1 Score: 252.3 bits (643), Expect = 2.900e-63
Identity = 132/243 (54.32%), Postives = 170/243 (69.96%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A   DL   FG D++  + +QIL KGE   SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I   MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E      EM  LVDPG FR +DEL+R     RGSL+VL L   +EG+
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQSQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGD 246          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_004569637.1 (ribosome maturation protein SBDS [Maylandia zebra] >XP_005932642.1 PREDICTED: ribosome maturation protein SBDS [Haplochromis burtoni] >XP_006805267.1 PREDICTED: ribosome maturation protein SBDS-like [Neolamprologus brichardi])

HSP 1 Score: 251.9 bits (642), Expect = 3.800e-63
Identity = 132/243 (54.32%), Postives = 169/243 (69.55%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A   DL   FG D++  + +QIL KGE   SDKER+  LE+ +RDIATIVAEK VNP + RPYTV +I   MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E      EM  LVDPG FR +DEL+R     RGSL+VL L   +EG+
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_005745081.1 (PREDICTED: ribosome maturation protein SBDS [Pundamilia nyererei])

HSP 1 Score: 251.9 bits (642), Expect = 3.800e-63
Identity = 132/243 (54.32%), Postives = 169/243 (69.55%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A   DL   FG D++  + +QIL KGE   SDKER+  LE+ +RDIATIVAEK VNP + RPYTV +I   MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E      EM  LVDPG FR +DEL+R     RGSL+VL L   +EG+
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGD 246          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_008424774.1 (PREDICTED: ribosome maturation protein SBDS [Poecilia reticulata])

HSP 1 Score: 250.4 bits (638), Expect = 1.100e-62
Identity = 130/243 (53.50%), Postives = 170/243 (69.96%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A   DL+  FG  +   + +QIL KGE   SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I   MK+IH++V P +++KQQALEVI++L++ M + RA M LR   P  E  A+ +    K  +    +E      EM +LVDPG FR +DEL+R     RGSL+VL L   +EG+
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTGDQTEICKQILSKGELQVSDKERQSQLETMFRDIATIVAEKCVNPDTRRPYTVSLIERAMKDIHYSVKPNKSSKQQALEVIRQLKETMEIQRAHMRLRLAVPAKE--AKRLREKLKPLLQVVESEEFDEELEMVVLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_015243750.1 (PREDICTED: ribosome maturation protein SBDS [Cyprinodon variegatus])

HSP 1 Score: 250.4 bits (638), Expect = 1.100e-62
Identity = 131/243 (53.91%), Postives = 170/243 (69.96%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A   DL+  FG D+   + RQIL KGE   SDKER++ LE+ +RDIA+IVAEK VNP + RPYTV +I   MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E      EM  LVDPG FR +DEL+R     RGSL+V+ L   +EG+
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVVSWRSGAEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTDDQTEICRQILAKGELQVSDKERQSQLETMFRDIASIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVIPAKE--AKRLKEKLKPLLQVVESEEFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVVSLKDVEEGD 246          
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_003968661.1 (PREDICTED: ribosome maturation protein SBDS [Takifugu rubripes])

HSP 1 Score: 249.6 bits (636), Expect = 1.900e-62
Identity = 131/243 (53.91%), Postives = 170/243 (69.96%), Query Frame = 0
Query:    8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249
            P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A   DL   FG D++  + +QIL KGE   SDKER+A LE+ +RDIATIVAEK VNP + RPYTV +I   MK+IH++V  +++ KQQALEVI++L++ M + RA M LR V P  E  A+ +    K  +    +E      EM  LVDPG FR +DEL+R     RGSL+V+ L   +EG+
Sbjct:    6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILTKGELQVSDKERQAQLETMFRDIATIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKASKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEDLEMVCLVDPGCFREIDELIRCETKGRGSLEVISLKDVEEGD 246          
The following BLAST results are available for this feature:
BLAST of NO04G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28517.13.500e-14168.48ribosome maturation protein sbds [Nannochloropsis ... [more]
CBN77759.13.500e-7753.16SBDS domain, zinc finger protein [Ectocarpus silic... [more]
ACQ59017.17.600e-6454.73Ribosome maturation protein SBDS [Anoplopoma fimbr... [more]
ACQ58627.11.300e-6353.88Ribosome maturation protein SBDS [Anoplopoma fimbr... [more]
XP_003459489.12.900e-6354.32PREDICTED: ribosome maturation protein SBDS [Oreoc... [more]
XP_004569637.13.800e-6354.32ribosome maturation protein SBDS [Maylandia zebra]... [more]
XP_005745081.13.800e-6354.32PREDICTED: ribosome maturation protein SBDS [Punda... [more]
XP_008424774.11.100e-6253.50PREDICTED: ribosome maturation protein SBDS [Poeci... [more]
XP_015243750.11.100e-6253.91PREDICTED: ribosome maturation protein SBDS [Cypri... [more]
XP_003968661.11.900e-6253.91PREDICTED: ribosome maturation protein SBDS [Takif... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009700NSK009700Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01180.1NO04G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578350gene_1900Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100131g15gene2063Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01180.1NO04G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01180 ID=NO04G01180|Name=NO04G01180|organism=Nannochloropsis oceanica|type=gene|length=1380bp
ATGTCACGGCGCATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGT
GGCCATGGTCCGGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCT
ACCGCAATAAGGTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGAC
GAGGTGCTCCAAACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCT
TGCTAGCAGCAAGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGG
CGTTGCTGCGGCAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAG
GAGCGGGAAGCCATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGT
GGCCGAGAAAAGCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAA
TGATTTTGAGTGGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGA
AATGCGAAGCAGCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAAT
GCCCCTCGACCGGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTG
AGGACCTTGCAGAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACA
GCTGCGGCTGAAGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGA
CCCGGGGGTGTTTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAG
GATCGTTGCAAGTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGAT
GTGGATTTTGAGATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGA
GGAGATAGCGGCCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGC
AGGAGGAGAGTGGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAG
GGCGAAAAAGATGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGC
ACGGGAGGAGGAGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAA
CATCCAAGGCGGGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAG
GTGCGGAAGCAGCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGA
CTCGACAGCTTCCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTA
GAGAAAAGATGGTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGC
CTAGCGTGCAACACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCG
GGAACATTACCGCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAA
AGGGAGGCGGACCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGAT
GAAATGTTCTTCCAGGACCGGGGCGTATAA
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protein sequence of NO04G01180.1

>NO04G01180.1-protein ID=NO04G01180.1-protein|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDID
EVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDK
EREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTR
NAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDT
AAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGSLQVLELNVQQEGEAD
VDFEIARKEMMKRHQQEEIAAKAVKAVEARDDVQEESGMEKEEDKDVLEE
GEKDEWNASGGGGRGDAREEEGEGKNAKNKGNKTSKAGKRREKERLKERE
VRKQQDAERRQQRENGDSTASLVSTTISNTSGGREKMVLTWQKKSAGGTR
LACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDAD
EMFFQDRGV*
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