NO04G01180.1, NO04G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01180.1
Unique NameNO04G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr4:373579..374958 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:373579..374958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01180.1 vs.
Match: EWM28517.1 (ribosome maturation protein sbds [Nannochloropsis gaditana])

HSP 1 Score: 548.1 bits (1411), Expect = 2.600e-152
Identity = 307/466 (65.88%), Postives = 355/466 (76.18%), Query Frame = 0 
Query:    1 MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGSLQVLELNVQQEGEADVDFEIARKEMMKRHQQEEIA-AKAVKAVEARDDVQEESGMEKEEDKDVLEEGEKDEWNASGGGGRGD------AREEEGEGKNAKNKGNKTSKAGKRREKERLKEREVRKQQDAERRQQRENGDSTASLVSTTISNTSGGREKMVLTWQKKSAGGTRLACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDADEMFFQDRGV 460
            MSRRIGQPVNQVRLTNVAMVR+HKGGKRFEIACYRNKVLSWRQGVE DIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQ++VEALLR ILEKGEYHPSDKEREAM ES YRDIATIVA KSVNP SNRPYTV MILSGMK+IHFAVNPTR AKQQALEVI++L+DVMPL+RAKM L+ VCPT EDLA+V+ G+   GID    EA G ++E+DLLVDPG+FR VDELVRG  +G+L VLELNVQQEGEADVD EIARK  M++ Q++E A A   KA         E   E+E  K+  +EGE      +     GD        EE  + +   ++G+K SKA +RREKE  +ERE+RK+++ +RR+++  G+      S   +   GG E+   +W+K   G  RLACNTCRVDF DAK YREHYRTDWHRYNLKLKEKGGGPV E EFE+VDADEMF   R +
Sbjct:    1 MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEADVDLEIARKAAMRKEQRDESAVANTCKAF--------EEAQEREGRKETDQEGEAGFLRGANVKAHGDEDSVVEGAEEHVDKQGRVSRGSKKSKAARRREKEIFRERELRKEEECKRRERQ--GEERPK--SEESNKKGGGSERG--SWEKARPGSNRLACNTCRVDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYRDI 452
The following BLAST results are available for this feature:
BLAST of NO04G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28517.12.600e-15265.88ribosome maturation protein sbds [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01180NO04G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01180.1NO04G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01180.1.cds1NO04G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01180.1 ID=NO04G01180.1|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGTCACGGCGCATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGT
GGCCATGGTCCGGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCT
ACCGCAATAAGGTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGAC
GAGGTGCTCCAAACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCT
TGCTAGCAGCAAGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGG
CGTTGCTGCGGCAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAG
GAGCGGGAAGCCATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGT
GGCCGAGAAAAGCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAA
TGATTTTGAGTGGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGA
AATGCGAAGCAGCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAAT
GCCCCTCGACCGGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTG
AGGACCTTGCAGAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACA
GCTGCGGCTGAAGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGA
CCCGGGGGTGTTTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAG
GATCGTTGCAAGTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGAT
GTGGATTTTGAGATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGA
GGAGATAGCGGCCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGC
AGGAGGAGAGTGGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAG
GGCGAAAAAGATGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGC
ACGGGAGGAGGAGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAA
CATCCAAGGCGGGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAG
GTGCGGAAGCAGCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGA
CTCGACAGCTTCCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTA
GAGAAAAGATGGTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGC
CTAGCGTGCAACACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCG
GGAACATTACCGCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAA
AGGGAGGCGGACCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGAT
GAAATGTTCTTCCAGGACCGGGGCGTATAA
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protein sequence of NO04G01180.1

>NO04G01180.1-protein ID=NO04G01180.1-protein|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDID
EVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDK
EREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTR
NAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDT
AAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGSLQVLELNVQQEGEAD
VDFEIARKEMMKRHQQEEIAAKAVKAVEARDDVQEESGMEKEEDKDVLEE
GEKDEWNASGGGGRGDAREEEGEGKNAKNKGNKTSKAGKRREKERLKERE
VRKQQDAERRQQRENGDSTASLVSTTISNTSGGREKMVLTWQKKSAGGTR
LACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDAD
EMFFQDRGV*
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mRNA from alignment at chr4:373579..374958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01180.1 ID=NO04G01180.1|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr4:373579..374958- (Nannochloropsis oceanica)
ATGTCACGGCGCATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGT
GGCCATGGTCCGGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCT
ACCGCAATAAGGTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGAC
GAGGTGCTCCAAACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCT
TGCTAGCAGCAAGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGG
CGTTGCTGCGGCAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAG
GAGCGGGAAGCCATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGT
GGCCGAGAAAAGCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAA
TGATTTTGAGTGGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGA
AATGCGAAGCAGCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAAT
GCCCCTCGACCGGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTG
AGGACCTTGCAGAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACA
GCTGCGGCTGAAGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGA
CCCGGGGGTGTTTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAG
GATCGTTGCAAGTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGAT
GTGGATTTTGAGATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGA
GGAGATAGCGGCCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGC
AGGAGGAGAGTGGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAG
GGCGAAAAAGATGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGC
ACGGGAGGAGGAGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAA
CATCCAAGGCGGGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAG
GTGCGGAAGCAGCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGA
CTCGACAGCTTCCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTA
GAGAAAAGATGGTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGC
CTAGCGTGCAACACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCG
GGAACATTACCGCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAA
AGGGAGGCGGACCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGAT
GAAATGTTCTTCCAGGACCGGGGCGTATAA
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Coding sequence (CDS) from alignment at chr4:373579..374958-

>NO04G01180.1 ID=NO04G01180.1|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr4:373579..374958- (Nannochloropsis oceanica)
ATGTCACGGCGCATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGT
GGCCATGGTCCGGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCT
ACCGCAATAAGGTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGAC
GAGGTGCTCCAAACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCT
TGCTAGCAGCAAGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGG
CGTTGCTGCGGCAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAG
GAGCGGGAAGCCATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGT
GGCCGAGAAAAGCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAA
TGATTTTGAGTGGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGA
AATGCGAAGCAGCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAAT
GCCCCTCGACCGGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTG
AGGACCTTGCAGAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACA
GCTGCGGCTGAAGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGA
CCCGGGGGTGTTTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAG
GATCGTTGCAAGTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGAT
GTGGATTTTGAGATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGA
GGAGATAGCGGCCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGC
AGGAGGAGAGTGGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAG
GGCGAAAAAGATGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGC
ACGGGAGGAGGAGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAA
CATCCAAGGCGGGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAG
GTGCGGAAGCAGCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGA
CTCGACAGCTTCCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTA
GAGAAAAGATGGTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGC
CTAGCGTGCAACACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCG
GGAACATTACCGCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAA
AGGGAGGCGGACCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGAT
GAAATGTTCTTCCAGGACCGGGGCGTATAA
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Synonyms
Publications