NO04G01060, NO04G01060 (gene) Nannochloropsis oceanica

Overview
NameNO04G01060
Unique NameNO04G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr4:338610..339671 +

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Properties
Property NameValue
DescriptionIsochorismatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:338610..339671 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036380Isochorismatase-like_sf
IPR000868Isochorismatase-like
Homology
BLAST of NO04G01060 vs. NCBI_GenBank
Match: EWM28514.1 (Isochorismatase [Nannochloropsis gaditana])

HSP 1 Score: 324.3 bits (830), Expect = 2.800e-85
Identity = 163/212 (76.89%), Postives = 187/212 (88.21%), Query Frame = 0
Query:    1 MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPSPFEELVKTNAAL 213
            M  +++ RA+GKLQP  TTFLLCD+QERFRDVIWHFPQVIRTAK MTAVG+ LQIPTLA+EQYPKAFGATV EL  A V+Y IPTFEKK+FSM+T+++KA++   PERKT VLFGIEAHVCVQQTALDLLEQGYAVH+LVDGVSSQ+AHDRAVALRRME AGA LTTAESLVFML+  ASHPQF+TI+ LIKEH AG P+PF +L+K N+AL
Sbjct:   20 MTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEH-AGEPNPFNDLLKENSAL 230          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: CBJ29063.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 206.1 bits (523), Expect = 1.100e-49
Identity = 106/198 (53.54%), Postives = 140/198 (70.71%), Query Frame = 0
Query:    1 MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVAN--VEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAA 197
            MA A+  R +GK+ P  T F  CD+QERFRD+I + P VI TAK M  V + L++P + TEQYPKA   TV EL+V     +  +P FEKKLFSM T++V+ ++ + P+RK  VLFGIEAHVCV QT LDLL+ GY VHV+ DGVSSQ+ HDRAVAL+RM+ +GA LT+AE + F LL  A + +FR ++ L+K+  A
Sbjct:   63 MAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNA 260          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: EJK72134.1 (hypothetical protein THAOC_06363, partial [Thalassiosira oceanica])

HSP 1 Score: 195.7 bits (496), Expect = 1.500e-46
Identity = 105/209 (50.24%), Postives = 140/209 (66.99%), Query Frame = 0
Query:    1 MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAE-----LDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPSPFEE 205
            M+  +  R+VGKL P  +  L+CD+QERFR +I     VI T K MT V K L IP +ATEQY K FG T+ +      D+ +   P+  FEKK FSMIT++V + + E+  R +++L GIEAHVC+QQTALDLLE G  VH++ DGVSSQ+ +DR +ALRR+E +GA LTTA+S  FMLLG A H  F+ ++ L+K H A  P+ F E
Sbjct:  125 MSLQAAARSVGKLSPSNSVLLVCDVQERFRPLISKMETVINTTKFMTGVAKKLHIPMVATEQYSKVFGKTIPDSFADPSDIGSTSCPV--FEKKKFSMITDEVASHL-ESLGRSSYLLVGIEAHVCLQQTALDLLEAGNDVHIVADGVSSQQTYDREMALRRLETSGAFLTTAQSAAFMLLGSADHADFKAVSKLVKAHMA-LPNEFNE 329          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: OLP81730.1 (Isochorismatase domain-containing protein 1 [Symbiodinium microadriaticum])

HSP 1 Score: 193.0 bits (489), Expect = 9.700e-46
Identity = 100/186 (53.76%), Postives = 128/186 (68.82%), Query Frame = 0
Query:    9 AVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEH 195
            ++G+L+P  T FLLCD+QERFRDVI   P+VI  AK M   G+ L IP + TEQYPKA G TV ELDV+        FEK  FSM T++  A +A   ++K  V+FG+E HVCVQQTA DLL +G+ VHVL DGVSSQRA DR VAL+R+  AG  +TTAES +F LL     PQF+ ++G++K +
Sbjct:    6 SLGRLEPASTVFLLCDVQERFRDVIDRMPEVIAAAKAMMDAGEALSIPIIITEQYPKALGHTVPELDVSKAN----VFEKTKFSMCTDEFLAYLASL-DKKDAVIFGVETHVCVQQTAFDLLSKGFQVHVLADGVSSQRAPDREVALQRLRQAGCFVTTAESALFELLRSKDAPQFKAVSGVVKAY 186          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: XP_002180462.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47870.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 189.1 bits (479), Expect = 1.400e-44
Identity = 98/187 (52.41%), Postives = 132/187 (70.59%), Query Frame = 0
Query:   10 VGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAE--LDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEH 195
            VGKLQP  T  LLCD+QERFR +I +   V+ T + MT+VGK L +P LAT+QY K FG TV +   D  +++  IP F+KK FSM+TEDV  ++ +  ++ T+++ GIEAHVCVQQT LDLLE+G  VHV+ D VSSQ+A+DR +AL+R++ AG  LTTA+S  FMLL  A H  F+ ++ L  EH
Sbjct:   14 VGKLQPESTALLLCDMQERFRPLIHNMETVVNTCRYMTSVGKALNVPVLATQQYTKVFGETVPDCFADPQDLQ-TIPNFDKKKFSMLTEDVD-RVLDEWKKDTYIIMGIEAHVCVQQTCLDLLERGANVHVIADAVSSQQAYDREIALQRLQAAGCFLTTAQSAAFMLLQSADHSNFKAVSKLTVEH 198          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: XP_002288394.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93830.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 188.0 bits (476), Expect = 3.100e-44
Identity = 94/189 (49.74%), Postives = 129/189 (68.25%), Query Frame = 0
Query:    8 RAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAE--LDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEH 195
            RAVG+L P  +  L+CDIQE FR +I++   VI T+K MT V K L +P + ++QY K FG T+ +   D  ++   +  FEKK FSM+T +    +     R +F+L GIEAHVC+QQT LDLLEQG+ VH++ DGVSSQ+ +DR +ALRR E AGA +TTA+S  FML+G A HP F+ ++ L+KEH
Sbjct:    9 RAVGRLSPSKSVLLVCDIQELFRPLIYNMETVINTSKFMTGVAKELDVPVVLSQQYTKVFGPTITDAIADPKDIGTTVVPFEKKKFSMLTPECSEHLTSL-GRTSFLLVGIEAHVCLQQTVLDLLEQGHDVHIIADGVSSQQKYDREMALRRCEGAGAFVTTAQSAAFMLMGTADHPNFKAVSKLVKEH 196          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: GAX28268.1 (hypothetical protein FisN_27Hh081 [Fistulifera solaris])

HSP 1 Score: 186.4 bits (472), Expect = 9.100e-44
Identity = 96/184 (52.17%), Postives = 122/184 (66.30%), Query Frame = 0
Query:   12 KLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVAN-VEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEH 195
            KL P  T  L+CD+QERFR +IW    V+RT + MT +   L IP + TEQY KAFG T+AE    N +      FEKK FSM+T  +  ++ + PER TFVL GIEAHVCVQQT LDLL     VH++ DG+SSQ+ +DR +AL+RM+ AGA LTTA+S  FML+  A HPQF+  + L  EH
Sbjct:   10 KLHPGKTVLLVCDVQERFRSLIWRCETVVRTTQYMTRLAALLDIPVVVTEQYKKAFGPTIAECFAENTIPSTAHVFEKKQFSMLTPPLLQQLQQYPERDTFVLVGIEAHVCVQQTCLDLLALQKEVHLVADGISSQQPYDREIALQRMQQAGAFLTTAQSAAFMLMQTADHPQFKAFSQLTVEH 193          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: GAX75726.1 (hypothetical protein CEUSTIGMA_g3169.t1 [Chlamydomonas eustigma])

HSP 1 Score: 186.4 bits (472), Expect = 9.100e-44
Identity = 97/193 (50.26%), Postives = 129/193 (66.84%), Query Frame = 0
Query:   10 VGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPSPF 203
            +GKL P  +   +CD+QE+FR VI HFP VI TA+ M      LQ+P +ATEQYPKA G+T +EL V  +    P   K LFSM+T +V+  + + P  K  +L GIEAHVCV QT LDL+E+G+ VH++VDGVSSQR HDRAV + RM  AGA +TT+E ++F ++  A H  F+ I+ L+KE  A  P PF
Sbjct:    7 IGKLIPSTSALFVCDVQEKFRPVISHFPAVIDTARRMIRGANTLQLPVIATEQYPKALGSTCSEL-VEVLTPTSPIVPKTLFSMLTPEVEEALQKMPNVKQVMLLGIEAHVCVLQTTLDLMERGFEVHLVVDGVSSQRLHDRAVGIHRMSQAGAFITTSEMILFQMMKDAKHKDFKAISALVKESQA-EPIPF 197          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: OEU16394.1 (Isochorismatase hydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-43
Identity = 97/187 (51.87%), Postives = 124/187 (66.31%), Query Frame = 0
Query:    9 AVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVANVEY-PIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEH 195
            +VGKL+P  T FLLCDIQ+RFR + W    +I TAK MT+V K L IP + T+QY K FG TV +       +     FEKK FSM T++VK+ + +T  R + V+FGIEAHVCVQQT LDLLE G  VH++ D VSSQ+ +DR +AL RM  AGA LTTA+S  FML+  A H  F+ ++ L  EH
Sbjct:   19 SVGKLKPENTVFLLCDIQDRFRPLTWRGETIINTAKYMTSVAKELDIPIVITQQYTKVFGETVKDTFADQEHFASCKIFEKKRFSMCTDEVKSHM-QTLNRDSVVIFGIEAHVCVQQTCLDLLEDGKEVHIIADSVSSQQPYDRELALNRMSQAGAFLTTAQSAAFMLMQSAEHANFKAVSKLTVEH 204          
BLAST of NO04G01060 vs. NCBI_GenBank
Match: PNW79169.1 (hypothetical protein CHLRE_09g403034v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 184.5 bits (467), Expect = 3.400e-43
Identity = 100/197 (50.76%), Postives = 128/197 (64.97%), Query Frame = 0
Query:    8 RAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVANVEYP--IPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPSPF 203
            R +GKL+P  +   +CD+QE+FR +I  FP VI T K M    K L IP L TEQYPKA G+TV+E  VA V  P   P F K LFSM+T +V + +   P+ K  +L GIEAHVCV QT+LDL+E+GY VH+L DGVSS R H RA AL+RM  AG   +T+E  +F L G A HP+F+ ++ L+KE  A  P  F
Sbjct:    4 RILGKLRPSTSALFVCDVQEKFRPLIAGFPTVIDTTKRMVLGAKCLDIPVLVTEQYPKALGSTVSE--VAGVLPPGTPPAFAKTLFSMLTPEVDSWLKTKPDVKQVMLVGIEAHVCVFQTSLDLIERGYEVHLLTDGVSSSRPHHRAAALQRMAQAGVLFSTSEMALFQLCGDAKHPRFKEVSALVKEGQAAEPFAF 198          
The following BLAST results are available for this feature:
BLAST of NO04G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28514.12.800e-8576.89Isochorismatase [Nannochloropsis gaditana][more]
CBJ29063.11.100e-4953.54conserved unknown protein [Ectocarpus siliculosus][more]
EJK72134.11.500e-4650.24hypothetical protein THAOC_06363, partial [Thalass... [more]
OLP81730.19.700e-4653.76Isochorismatase domain-containing protein 1 [Symbi... [more]
XP_002180462.11.400e-4452.41predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002288394.13.100e-4449.74predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX28268.19.100e-4452.17hypothetical protein FisN_27Hh081 [Fistulifera sol... [more]
GAX75726.19.100e-4450.26hypothetical protein CEUSTIGMA_g3169.t1 [Chlamydom... [more]
OEU16394.12.000e-4351.87Isochorismatase hydrolase [Fragilariopsis cylindru... [more]
PNW79169.13.400e-4350.76hypothetical protein CHLRE_09g403034v5 [Chlamydomo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009712NSK009712Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01060.1NO04G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578308gene_1886Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100131g6gene2071Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01060.1NO04G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01060 ID=NO04G01060|Name=NO04G01060|organism=Nannochloropsis oceanica|type=gene|length=1062bp
ATGGCCACGGCCTCCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGG
CACGACATTCTTGCTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTT
GGCATTTTCCTCAGgtgagggtaggagtgcggacatacggaagaaggacg
gggaataagggaggggaagatgtgccatcggatgccactcattcaatcat
acatggagcgaaaatcataaaaagtggctcaatgtccgtccaattcgcca
cccttattttttattgtttgtccctagGTCATCCGCACAGCCAAGTTGAT
GACCGCGGTGGGGAAGCATTTGCAGATCCCCACCTTGGCCACGGAGCAGT
ACCCCAAAGCATTCGGTGCCACGgtaagatatagagtgggttgatggatc
gcgcaaagggggagtaagaaagatagagggagagaggttgggggggagag
atgagacggatgacagccagcgtctggtcagcggctcacacagacatgcg
tgcgcatcaacacttgcgttattggtgagtgaccatgccagggaccgata
caagtttctacaatttggaagtaaagggacaagggaaagtaagagaccaa
ctcatccccacctaacctgtcccacctattcagGTGGCTGAACTGGACGT
GGCCAACGTTGAGTACCCTATCCCGACCTTCGAGAAGAAGCTCTTCAGCA
TGATCACCGAGGACGTCAAGGCCAAGATAGCGGAGACGCCGGAACGGAAA
ACATTCGTTTTGTTTGGAATCGAGGCCCATGTCTGCGTGCAGCAGACGGC
CTTGGACCTGCTTGAACAGGGCTATGCCGTTCACGTGCTCGTGGACGGGG
TGTCGTCGCAAAGGGCACACGACCGAGCTGTAGCTTTGAGAAGGATGGAA
AATGCAGGGGCTCATCTGACGACGGCGGAGAGTCTAGTTTTCATGTTGCT
TGGAGGCGCATCGCATCCTCAATTCCGCACGATTGCGGGCTTAATCAAGG
AGCATGCGGCGGGGACGCCGAGCCCGTTTGAGGAGCTAGTGAAAACCAAC
GCAGCGCTTTAA
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protein sequence of NO04G01060.1

>NO04G01060.1-protein ID=NO04G01060.1-protein|Name=NO04G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVG
KHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKA
KIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHD
RAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPS
PFEELVKTNAAL*
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Synonyms
Publications