NO04G01060.1, NO04G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01060.1
Unique NameNO04G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length639
Alignment locationchr4:338610..339671 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:338610..339671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G01060.1 vs.
Match: EWM28514.1 (Isochorismatase [Nannochloropsis gaditana])

HSP 1 Score: 324.3 bits (830), Expect = 2.800e-85
Identity = 163/212 (76.89%), Postives = 187/212 (88.21%), Query Frame = 0 
Query:    1 MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVGKHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKAKIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHDRAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPSPFEELVKTNAAL 213
            M  +++ RA+GKLQP  TTFLLCD+QERFRDVIWHFPQVIRTAK MTAVG+ LQIPTLA+EQYPKAFGATV EL  A V+Y IPTFEKK+FSM+T+++KA++   PERKT VLFGIEAHVCVQQTALDLLEQGYAVH+LVDGVSSQ+AHDRAVALRRME AGA LTTAESLVFML+  ASHPQF+TI+ LIKEH AG P+PF +L+K N+AL
Sbjct:   20 MTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEH-AGEPNPFNDLLKENSAL 230
The following BLAST results are available for this feature:
BLAST of NO04G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28514.12.800e-8576.89Isochorismatase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01060NO04G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01060.1NO04G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01060.1.cds1NO04G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01060.1.cds2NO04G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01060.1.cds3NO04G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01060.1 ID=NO04G01060.1|Name=NO04G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGGCCACGGCCTCCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGG
CACGACATTCTTGCTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTT
GGCATTTTCCTCAGGTCATCCGCACAGCCAAGTTGATGACCGCGGTGGGG
AAGCATTTGCAGATCCCCACCTTGGCCACGGAGCAGTACCCCAAAGCATT
CGGTGCCACGGTGGCTGAACTGGACGTGGCCAACGTTGAGTACCCTATCC
CGACCTTCGAGAAGAAGCTCTTCAGCATGATCACCGAGGACGTCAAGGCC
AAGATAGCGGAGACGCCGGAACGGAAAACATTCGTTTTGTTTGGAATCGA
GGCCCATGTCTGCGTGCAGCAGACGGCCTTGGACCTGCTTGAACAGGGCT
ATGCCGTTCACGTGCTCGTGGACGGGGTGTCGTCGCAAAGGGCACACGAC
CGAGCTGTAGCTTTGAGAAGGATGGAAAATGCAGGGGCTCATCTGACGAC
GGCGGAGAGTCTAGTTTTCATGTTGCTTGGAGGCGCATCGCATCCTCAAT
TCCGCACGATTGCGGGCTTAATCAAGGAGCATGCGGCGGGGACGCCGAGC
CCGTTTGAGGAGCTAGTGAAAACCAACGCAGCGCTTTAA
back to top

protein sequence of NO04G01060.1

>NO04G01060.1-protein ID=NO04G01060.1-protein|Name=NO04G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVG
KHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKA
KIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHD
RAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPS
PFEELVKTNAAL*
back to top

mRNA from alignment at chr4:338610..339671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01060.1 ID=NO04G01060.1|Name=NO04G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at chr4:338610..339671+ (Nannochloropsis oceanica)
ATGGCCACGGCCTCCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGG
CACGACATTCTTGCTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTT
GGCATTTTCCTCAGGTGAGGGTAGGAGTGCGGACATACGGAAGAAGGACG
GGGAATAAGGGAGGGGAAGATGTGCCATCGGATGCCACTCATTCAATCAT
ACATGGAGCGAAAATCATAAAAAGTGGCTCAATGTCCGTCCAATTCGCCA
CCCTTATTTTTTATTGTTTGTCCCTAGGTCATCCGCACAGCCAAGTTGAT
GACCGCGGTGGGGAAGCATTTGCAGATCCCCACCTTGGCCACGGAGCAGT
ACCCCAAAGCATTCGGTGCCACGGTAAGATATAGAGTGGGTTGATGGATC
GCGCAAAGGGGGAGTAAGAAAGATAGAGGGAGAGAGGTTGGGGGGGAGAG
ATGAGACGGATGACAGCCAGCGTCTGGTCAGCGGCTCACACAGACATGCG
TGCGCATCAACACTTGCGTTATTGGTGAGTGACCATGCCAGGGACCGATA
CAAGTTTCTACAATTTGGAAGTAAAGGGACAAGGGAAAGTAAGAGACCAA
CTCATCCCCACCTAACCTGTCCCACCTATTCAGGTGGCTGAACTGGACGT
GGCCAACGTTGAGTACCCTATCCCGACCTTCGAGAAGAAGCTCTTCAGCA
TGATCACCGAGGACGTCAAGGCCAAGATAGCGGAGACGCCGGAACGGAAA
ACATTCGTTTTGTTTGGAATCGAGGCCCATGTCTGCGTGCAGCAGACGGC
CTTGGACCTGCTTGAACAGGGCTATGCCGTTCACGTGCTCGTGGACGGGG
TGTCGTCGCAAAGGGCACACGACCGAGCTGTAGCTTTGAGAAGGATGGAA
AATGCAGGGGCTCATCTGACGACGGCGGAGAGTCTAGTTTTCATGTTGCT
TGGAGGCGCATCGCATCCTCAATTCCGCACGATTGCGGGCTTAATCAAGG
AGCATGCGGCGGGGACGCCGAGCCCGTTTGAGGAGCTAGTGAAAACCAAC
GCAGCGCTTTAA
back to top

Coding sequence (CDS) from alignment at chr4:338610..339671+

>NO04G01060.1 ID=NO04G01060.1|Name=NO04G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr4:338610..339671+ (Nannochloropsis oceanica)
ATGGCCACGGCCTCCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGG
CACGACATTCTTGCTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTT
GGCATTTTCCTCAGGTCATCCGCACAGCCAAGTTGATGACCGCGGTGGGG
AAGCATTTGCAGATCCCCACCTTGGCCACGGAGCAGTACCCCAAAGCATT
CGGTGCCACGGTGGCTGAACTGGACGTGGCCAACGTTGAGTACCCTATCC
CGACCTTCGAGAAGAAGCTCTTCAGCATGATCACCGAGGACGTCAAGGCC
AAGATAGCGGAGACGCCGGAACGGAAAACATTCGTTTTGTTTGGAATCGA
GGCCCATGTCTGCGTGCAGCAGACGGCCTTGGACCTGCTTGAACAGGGCT
ATGCCGTTCACGTGCTCGTGGACGGGGTGTCGTCGCAAAGGGCACACGAC
CGAGCTGTAGCTTTGAGAAGGATGGAAAATGCAGGGGCTCATCTGACGAC
GGCGGAGAGTCTAGTTTTCATGTTGCTTGGAGGCGCATCGCATCCTCAAT
TCCGCACGATTGCGGGCTTAATCAAGGAGCATGCGGCGGGGACGCCGAGC
CCGTTTGAGGAGCTAGTGAAAACCAACGCAGCGCTTTAA
back to top
Synonyms
Publications