NO04G01040, NO04G01040 (gene) Nannochloropsis oceanica

Overview
NameNO04G01040
Unique NameNO04G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr4:335700..336596 +

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Properties
Property NameValue
DescriptionRna exonuclease 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:335700..336596 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Homology
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: EWM28509.1 (rna exonuclease 4 [Nannochloropsis gaditana])

HSP 1 Score: 345.1 bits (884), Expect = 2.100e-91
Identity = 192/292 (65.75%), Postives = 220/292 (75.34%), Query Frame = 0 
Query:    1 MSNWARLQAKFSTAENGRVQKRTAALTKEDASPAEGDFLSSQSNGRSAKGIAGAARAPAQGKKRXXXXXXXXXXXXXXXXXXXXXXXXKLRSVESLADDVTVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIRK--MHKYTTAAAKKQK 291
            MSNW RLQ K   AE  RV+K+ AA +   A  ++   +S  S G+  +    A  AP   +KR                        +LRS+   ADD+TV+EK+LYVGLDCEMVGVGDGGKRSALARVT+V+FDGRVIYDEHVRPRER+TDFRTWVSGVKAKHLKAAL LK+CI QVA+LVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMR  G+EGGKLRPR+LKDLA + LGMEIQ GKHDS +DARAAMLLYRAQR EWEKE+RK  +H+YT A  KK++
Sbjct:    1 MSNWERLQIKILKAEEERVKKKAAA-SNIGAGTSQKPSMSDLSQGKPTQ---IARSAPKHKRKR--REISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKR 286
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BLAST of NO04G01040 vs. NCBI_GenBank
Match: XP_005855440.1 (rna exonuclease 4, partial [Nannochloropsis gaditana CCMP526] >EKU20921.1 rna exonuclease 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.9 bits (712), Expect = 1.900e-71
Identity = 143/175 (81.71%), Postives = 158/175 (90.29%), Query Frame = 0 
Query:  125 SALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIRK--MHKYTTAAAKKQKR-KVGVQ 297
            SALARVT+V+FDGRVIYDEHVRPRER+TDFRTWVSGVKAKHLKAAL LK+CI QVA+LVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMR  G+EGGKLRPR+LKDLA + LGMEIQ GKHDS +DARAAMLLYRAQR EWEKE+RK  +H+YT A  KK++  + GVQ
Sbjct:    1 SALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKRNLRDGVQ 175
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BLAST of NO04G01040 vs. NCBI_GenBank
Match: CBN76505.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 211.8 bits (538), Expect = 2.800e-51
Identity = 109/193 (56.48%), Postives = 136/193 (70.47%), Query Frame = 0 
Query:  100 VTVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIRKMHKYTTAAAKKQKRK 293
            +T  EKA YV LDCEMVGVG GG RSALAR  +V++DG  IYD+HV P ERVTDFRT+VSGVKA HLK  + L+ C ++VA ++K K++VGHAL NDL+ LM+ HP    RDTA YR Y +  G+ GGKLRPR LK L++E L   IQ G+H+  EDA+AAM LY+  R EWEK +       +AA K + RK
Sbjct:  265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKLARFEWEKSL-------SAAGKMRGRK 450
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BLAST of NO04G01040 vs. NCBI_GenBank
Match: XP_012211006.1 (hypothetical protein SPRG_16319 [Saprolegnia parasitica CBS 223.65] >KDO18280.1 hypothetical protein SPRG_16319 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 199.5 bits (506), Expect = 1.500e-47
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 0 
Query:   97 ADDVTVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            A  +  ++ +L V +DCEMVGVG  GKRS LAR ++V+FDG V+YDEHV+P ERVTDFRT VSG++AK L+ AL  + C + VA +  GKI+VGHA++ND+Q LML HP  MIRDT +YR YMR R   G KL P+ LK LAEE L   IQ G+HDS EDAR  + LY+     WEK IR
Sbjct:   61 APSIDWIDTSLIVAMDCEMVGVGSDGKRSVLARCSIVDFDGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEHDSVEDARITLELYKRAMGPWEKAIR 239
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: XP_008616649.1 (hypothetical protein SDRG_12356 [Saprolegnia diclina VS20] >EQC29810.1 hypothetical protein SDRG_12356 [Saprolegnia diclina VS20])

HSP 1 Score: 196.8 bits (499), Expect = 9.400e-47
Identity = 103/188 (54.79%), Postives = 131/188 (69.68%), Query Frame = 0 
Query:   89 KLRSVESLADDVTVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            K R V++ A  V  ++ +L V +DCEMVGVG  GKRS LAR ++V+F+G V+YDEHV+P ERVTDFRT VSG++AK L+ AL  + C + VA +  GKI+VGHA++ND+Q LML HP   IRDT +YR YMR R   G KL P+ LK LAEE L   IQ G+HDS EDAR  + LY+     WEK I+
Sbjct:   53 KARKVKA-APSVDWIDTSLIVAMDCEMVGVGSDGKRSVLARCSIVDFEGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGQIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEHDSVEDARITLELYKRAMGPWEKAIK 238
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: OQR90362.1 (RNA exonuclease 4 [Thraustotheca clavata])

HSP 1 Score: 195.3 bits (495), Expect = 2.700e-46
Identity = 98/178 (55.06%), Postives = 128/178 (71.91%), Query Frame = 0 
Query:   99 DVTVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            +V  ++ +  V +DCEMVGVG  G RS LAR ++V+FDG V+YD+HV+P ERVTDFRT VSG+++KHL+ A+    C Q+VAE+ + KI+VGHAL+ND+Q LML HP  MIRDT +YR YMR R   G KL P+ LK+LA E L   IQ G+HDS EDAR ++ LY+     WEK I+
Sbjct:   56 NVEWIDTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLFPKSLKNLALEVLKKTIQTGEHDSVEDARTSLELYKHAMAPWEKAIK 232
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: XP_009522405.1 (hypothetical protein PHYSODRAFT_489818 [Phytophthora sojae] >EGZ19688.1 hypothetical protein PHYSODRAFT_489818 [Phytophthora sojae])

HSP 1 Score: 193.7 bits (491), Expect = 8.000e-46
Identity = 98/174 (56.32%), Postives = 128/174 (73.56%), Query Frame = 0 
Query:  103 VEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            V+ +L VG+DCEMVGVG  GK S LAR ++V+++G V+YD+HVRP E+VTDFRT VSG+K+  L+ A+  K C+++V +L++ KIIVGHALKND Q LM   P  +IRDTA YR YMR R   G KL P+ LK L EE LG +IQ G+HDS EDARA + LY+ ++  WEK +R
Sbjct:  118 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYNGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFKQCLKEVGKLLQDKIIVGHALKNDFQALMFTPPKHLIRDTAYYRPYMR-RKMNGTKLYPKALKVLTEEVLGRQIQTGQHDSVEDARATLELYKREQYAWEKYLR 290
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: ETI57018.1 (hypothetical protein F443_00634 [Phytophthora parasitica P1569] >ETM56454.1 hypothetical protein L914_00581 [Phytophthora parasitica])

HSP 1 Score: 193.7 bits (491), Expect = 8.000e-46
Identity = 98/174 (56.32%), Postives = 128/174 (73.56%), Query Frame = 0 
Query:  103 VEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            V+ +L VG+DCEMVGVG  GK S LAR ++V++DG V+YD+HVRP E+VTDFRT VSG+K+  L+ A+    C+++V +L++ KI+VGHALKND Q LM   P  +IRDTA YR YMR R   G KL P+ LK+L  E LG EIQ G+HDS EDARAA+ LY+ ++  WEK +R
Sbjct:  114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMR-RKMNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: ETK96794.1 (hypothetical protein L915_00583 [Phytophthora parasitica] >ETP54767.1 hypothetical protein F442_00601 [Phytophthora parasitica P10297])

HSP 1 Score: 193.7 bits (491), Expect = 8.000e-46
Identity = 98/174 (56.32%), Postives = 128/174 (73.56%), Query Frame = 0 
Query:  103 VEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            V+ +L VG+DCEMVGVG  GK S LAR ++V++DG V+YD+HVRP E+VTDFRT VSG+K+  L+ A+    C+++V +L++ KI+VGHALKND Q LM   P  +IRDTA YR YMR R   G KL P+ LK+L  E LG EIQ G+HDS EDARAA+ LY+ ++  WEK +R
Sbjct:  114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMR-RKMNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286
[Close]
BLAST of NO04G01040 vs. NCBI_GenBank
Match: ETL50131.1 (hypothetical protein L916_00585 [Phytophthora parasitica] >ETP26795.1 hypothetical protein F441_00617 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 193.7 bits (491), Expect = 8.000e-46
Identity = 98/174 (56.32%), Postives = 128/174 (73.56%), Query Frame = 0 
Query:  103 VEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIR 277
            V+ +L VG+DCEMVGVG  GK S LAR ++V++DG V+YD+HVRP E+VTDFRT VSG+K+  L+ A+    C+++V +L++ KI+VGHALKND Q LM   P  +IRDTA YR YMR R   G KL P+ LK+L  E LG EIQ G+HDS EDARAA+ LY+ ++  WEK +R
Sbjct:  114 VDNSLIVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKHVRPVEKVTDFRTHVSGIKSSSLRHAIPFALCLKEVGKLLQDKIVVGHALKNDFQALMFTPPKHLIRDTAYYRPYMR-RKMNGTKLYPKSLKNLTAEVLGKEIQTGQHDSVEDARAALELYKREQYAWEKYLR 286
The following BLAST results are available for this feature:
BLAST of NO04G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28509.12.100e-9165.75rna exonuclease 4 [Nannochloropsis gaditana][more]
XP_005855440.11.900e-7181.71rna exonuclease 4, partial [Nannochloropsis gadita... [more]
CBN76505.12.800e-5156.48conserved unknown protein [Ectocarpus siliculosus][more]
XP_012211006.11.500e-4756.67hypothetical protein SPRG_16319 [Saprolegnia paras... [more]
XP_008616649.19.400e-4754.79hypothetical protein SDRG_12356 [Saprolegnia dicli... [more]
OQR90362.12.700e-4655.06RNA exonuclease 4 [Thraustotheca clavata][more]
XP_009522405.18.000e-4656.32hypothetical protein PHYSODRAFT_489818 [Phytophtho... [more]
ETI57018.18.000e-4656.32hypothetical protein F443_00634 [Phytophthora para... [more]
ETK96794.18.000e-4656.32hypothetical protein L915_00583 [Phytophthora para... [more]
ETL50131.18.000e-4656.32hypothetical protein L916_00585 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009715NSK009715Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01040.1NO04G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578302gene_1884Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100131g4gene2073Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01040.1NO04G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01040 ID=NO04G01040|Name=NO04G01040|organism=Nannochloropsis oceanica|type=gene|length=897bp
ATGTCCAATTGGGCGCGTCTACAGGCCAAATTTTCCACAGCTGAGAATGG
GAGAGTCCAAAAGAGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCCCG
CGGAAGGGGATTTCCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGGGC
ATAGCAGGAGCAGCGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGGAG
AGACCTATCCGAGGCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGCCA
AGGACAAGGAAGACAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACGTG
ACGGTGGTTGAAAAGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTGGG
TGTGGGGGATGGAGGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGTGA
ATTTTGATGGCCGCGTCATTTACGACGAGCATGTTAGGCCTCGGGAGCGC
GTGACAGACTTCCGCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTAAA
GGCAGCTTTGGAACTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGTCA
AGGGCAAAATCATTGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCCTC
ATGCTCCAGCATCCAGTGGCCATGATTAGGGATACGGCCAGGTATCGTGC
TTACATGCGTCCGCGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAAAC
TGAAGGACCTGGCTGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGAAG
CATGACTCAGGAGAGGATGCACGGGCCGCGATGCTGCTCTATCGCGCGCA
GCGAGTGGAGTGGGAGAAAGAGATTAGGAAGATGCATAAATACACAACTG
CGGCAGCGAAGAAGCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAA
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protein sequence of NO04G01040.1

>NO04G01040.1-protein ID=NO04G01040.1-protein|Name=NO04G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSNWARLQAKFSTAENGRVQKRTAALTKEDASPAEGDFLSSQSNGRSAKG
IAGAARAPAQGKKRKRRDLSEAAAVAERARQEAKDKEDKLRSVESLADDV
TVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRER
VTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVL
MLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGK
HDSGEDARAAMLLYRAQRVEWEKEIRKMHKYTTAAAKKQKRKVGVQVT*
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Synonyms
Publications