NO04G01040.1, NO04G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01040.1
Unique NameNO04G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr4:335700..336596 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:335700..336596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01040.1 vs.
Match: EWM28509.1 (rna exonuclease 4 [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 1.100e-100
Identity = 205/292 (70.21%), Postives = 237/292 (81.16%), Query Frame = 0 
Query:    1 MSNWARLQAKFSTAENGRVQKRTAALTKEDASPAEGDFLSSQSNGRSAKGIAGAARAPAQGKKRKRRDLSEAAAVAERARQEAKDKEDKLRSVESLADDVTVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRERVTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGKHDSGEDARAAMLLYRAQRVEWEKEIRK--MHKYTTAAAKKQK 291
            MSNW RLQ K   AE  RV+K+ AA +   A  ++   +S  S G+  +    A +      KRKRR++SEA   AERAR+  K+KED+LRS+   ADD+TV+EK+LYVGLDCEMVGVGDGGKRSALARVT+V+FDGRVIYDEHVRPRER+TDFRTWVSGVKAKHLKAAL LK+CI QVA+LVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMR  G+EGGKLRPR+LKDLA + LGMEIQ GKHDS +DARAAMLLYRAQR EWEKE+RK  +H+YT A  KK++
Sbjct:    1 MSNWERLQIKILKAEEERVKKKAAA-SNIGAGTSQKPSMSDLSQGKPTQIARSAPK-----HKRKRREISEAVREAERAREAGKEKEDRLRSLTLSADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKELRKTHLHRYTKANGKKKR 286
The following BLAST results are available for this feature:
BLAST of NO04G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28509.11.100e-10070.21rna exonuclease 4 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01040NO04G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01040.1NO04G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01040.1.cds1NO04G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01040.1 ID=NO04G01040.1|Name=NO04G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
ATGTCCAATTGGGCGCGTCTACAGGCCAAATTTTCCACAGCTGAGAATGG
GAGAGTCCAAAAGAGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCCCG
CGGAAGGGGATTTCCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGGGC
ATAGCAGGAGCAGCGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGGAG
AGACCTATCCGAGGCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGCCA
AGGACAAGGAAGACAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACGTG
ACGGTGGTTGAAAAGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTGGG
TGTGGGGGATGGAGGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGTGA
ATTTTGATGGCCGCGTCATTTACGACGAGCATGTTAGGCCTCGGGAGCGC
GTGACAGACTTCCGCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTAAA
GGCAGCTTTGGAACTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGTCA
AGGGCAAAATCATTGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCCTC
ATGCTCCAGCATCCAGTGGCCATGATTAGGGATACGGCCAGGTATCGTGC
TTACATGCGTCCGCGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAAAC
TGAAGGACCTGGCTGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGAAG
CATGACTCAGGAGAGGATGCACGGGCCGCGATGCTGCTCTATCGCGCGCA
GCGAGTGGAGTGGGAGAAAGAGATTAGGAAGATGCATAAATACACAACTG
CGGCAGCGAAGAAGCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAA
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protein sequence of NO04G01040.1

>NO04G01040.1-protein ID=NO04G01040.1-protein|Name=NO04G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSNWARLQAKFSTAENGRVQKRTAALTKEDASPAEGDFLSSQSNGRSAKG
IAGAARAPAQGKKRKRRDLSEAAAVAERARQEAKDKEDKLRSVESLADDV
TVVEKALYVGLDCEMVGVGDGGKRSALARVTMVNFDGRVIYDEHVRPRER
VTDFRTWVSGVKAKHLKAALELKDCIQQVAELVKGKIIVGHALKNDLQVL
MLQHPVAMIRDTARYRAYMRPRGREGGKLRPRKLKDLAEECLGMEIQGGK
HDSGEDARAAMLLYRAQRVEWEKEIRKMHKYTTAAAKKQKRKVGVQVT*
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mRNA from alignment at chr4:335700..336596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01040.1 ID=NO04G01040.1|Name=NO04G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp|location=Sequence derived from alignment at chr4:335700..336596+ (Nannochloropsis oceanica)
ATGTCCAATTGGGCGCGTCTACAGGCCAAATTTTCCACAGCTGAGAATGG
GAGAGTCCAAAAGAGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCCCG
CGGAAGGGGATTTCCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGGGC
ATAGCAGGAGCAGCGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGGAG
AGACCTATCCGAGGCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGCCA
AGGACAAGGAAGACAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACGTG
ACGGTGGTTGAAAAGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTGGG
TGTGGGGGATGGAGGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGTGA
ATTTTGATGGCCGCGTCATTTACGACGAGCATGTTAGGCCTCGGGAGCGC
GTGACAGACTTCCGCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTAAA
GGCAGCTTTGGAACTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGTCA
AGGGCAAAATCATTGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCCTC
ATGCTCCAGCATCCAGTGGCCATGATTAGGGATACGGCCAGGTATCGTGC
TTACATGCGTCCGCGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAAAC
TGAAGGACCTGGCTGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGAAG
CATGACTCAGGAGAGGATGCACGGGCCGCGATGCTGCTCTATCGCGCGCA
GCGAGTGGAGTGGGAGAAAGAGATTAGGAAGATGCATAAATACACAACTG
CGGCAGCGAAGAAGCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAA
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Coding sequence (CDS) from alignment at chr4:335700..336596+

>NO04G01040.1 ID=NO04G01040.1|Name=NO04G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr4:335700..336596+ (Nannochloropsis oceanica)
ATGTCCAATTGGGCGCGTCTACAGGCCAAATTTTCCACAGCTGAGAATGG
GAGAGTCCAAAAGAGGACTGCAGCGTTGACCAAGGAAGATGCTTCTCCCG
CGGAAGGGGATTTCCTTTCTTCGCAATCGAACGGCAGGAGTGCAAAGGGC
ATAGCAGGAGCAGCGAGAGCACCAGCTCAAGGTAAAAAGCGCAAGCGGAG
AGACCTATCCGAGGCCGCAGCAGTGGCAGAGAGGGCCCGGCAGGAAGCCA
AGGACAAGGAAGACAAACTCCGAAGTGTGGAGTCGCTTGCAGACGACGTG
ACGGTGGTTGAAAAGGCCTTGTATGTGGGCCTGGATTGCGAGATGGTGGG
TGTGGGGGATGGAGGGAAACGAAGTGCTTTGGCCCGTGTGACAATGGTGA
ATTTTGATGGCCGCGTCATTTACGACGAGCATGTTAGGCCTCGGGAGCGC
GTGACAGACTTCCGCACGTGGGTGAGTGGGGTCAAGGCCAAGCACTTAAA
GGCAGCTTTGGAACTGAAAGACTGTATCCAGCAAGTAGCTGAACTGGTCA
AGGGCAAAATCATTGTAGGGCATGCTTTAAAGAATGATTTGCAAGTCCTC
ATGCTCCAGCATCCAGTGGCCATGATTAGGGATACGGCCAGGTATCGTGC
TTACATGCGTCCGCGTGGGAGGGAGGGAGGGAAGCTCCGACCGCGTAAAC
TGAAGGACCTGGCTGAGGAATGCTTGGGGATGGAGATTCAGGGAGGGAAG
CATGACTCAGGAGAGGATGCACGGGCCGCGATGCTGCTCTATCGCGCGCA
GCGAGTGGAGTGGGAGAAAGAGATTAGGAAGATGCATAAATACACAACTG
CGGCAGCGAAGAAGCAGAAGCGCAAGGTGGGCGTGCAGGTGACGTAA
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Synonyms
Publications