NO04G00950, NO04G00950 (gene) Nannochloropsis oceanica

Overview
NameNO04G00950
Unique NameNO04G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr4:306511..307614 -

Link to JBrowse

Properties
Property NameValue
DescriptionProgrammed cell death protein 5
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:306511..307614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036883PDCD5-like_sf
IPR002836PDCD5-related
Homology
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: EWM28461.1 (programmed cell death protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 131.7 bits (330), Expect = 1.700e-27
Identity = 78/119 (65.55%), Postives = 84/119 (70.59%), Query Frame = 0 
Query:    1 MEPAGEIDLPPGFTPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            MEPAGE+DLPPGFT AG                              RRQFMLDQIL PEAKERLARIAIVRKEK R V+DML+QAATSGRL GKV+EEQLI+MLEQVSSQV+KKATKV
Sbjct:    1 MEPAGELDLPPGFTAAGA--GMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKV 117
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: CBJ30258.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 4.200e-13
Identity = 47/68 (69.12%), Postives = 59/68 (86.76%), Query Frame = 0 
Query:   52 MLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            +LDQI+  EA+ RL+ IA+V+ +KAR VE+ML+ AATSG+LGGKVTE+Q IQMLEQVSSQ+EKK TKV
Sbjct:   45 ILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQVSSQMEKK-TKV 111
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: OWM73044.1 (hypothetical protein CDL15_Pgr001158 [Punica granatum])

HSP 1 Score: 82.8 bits (203), Expect = 9.300e-13
Identity = 46/72 (63.89%), Postives = 61/72 (84.72%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QILLPEA+ERLARIA+V+ EKAR+VED++L+AA  G++  KVTEE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILLPEARERLARIALVKPEKARSVEDVILRAAQMGQIVEKVTEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: PKH47965.1 (hypothetical protein CRG98_050391 [Punica granatum])

HSP 1 Score: 82.8 bits (203), Expect = 9.300e-13
Identity = 46/72 (63.89%), Postives = 61/72 (84.72%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QILLPEA+ERLARIA+V+ EKAR+VED++L+AA  G++  KVTEE+LI +LEQ+++Q  K+ TKV
Sbjct:   47 RRQMMLSQILLPEARERLARIALVKPEKARSVEDVILRAAQMGQIVEKVTEERLISLLEQINTQTTKQ-TKV 117
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_012456994.1 (PREDICTED: DNA-binding protein DDB_G0278111 isoform X1 [Gossypium raimondii] >XP_016697099.1 PREDICTED: DNA-binding protein DDB_G0278111-like isoform X1 [Gossypium hirsutum] >KJB68844.1 hypothetical protein B456_011G041300 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: KJB68846.1 (hypothetical protein B456_011G041300 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_012456996.1 (PREDICTED: DNA-binding protein DDB_G0278111 isoform X3 [Gossypium raimondii] >KJB68850.1 hypothetical protein B456_011G041300 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: PPD68676.1 (hypothetical protein GOBAR_DD34446 [Gossypium barbadense])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_013457327.1 (DNA-binding protein DDB_G0278111 [Medicago truncatula] >AFK49045.1 unknown [Medicago truncatula] >KEH31358.1 double-stranded DNA-binding-like protein [Medicago truncatula])

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-11
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKA+ VED++L+AA  G++  KVTEE+LI +LEQ++SQ  K+ TKV
Sbjct:   46 RRQMMLSQILSAEARERLARIALVKPEKAKGVEDVILRAAQMGQIAEKVTEERLITLLEQINSQTAKQ-TKV 116
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_020092499.1 (DNA-binding protein DDB_G0278111 isoform X1 [Ananas comosus] >XP_020092507.1 DNA-binding protein DDB_G0278111 isoform X2 [Ananas comosus])

HSP 1 Score: 77.4 bits (189), Expect = 3.900e-11
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ +KAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSAEARERLARIALVKPDKARGVEDVLLRAAQTGQISEKVSEERLISLLEQINTQTSKQ-TKV 115
The following BLAST results are available for this feature:
BLAST of NO04G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28461.11.700e-2765.55programmed cell death protein 5 [Nannochloropsis g... [more]
CBJ30258.14.200e-1369.12conserved unknown protein [Ectocarpus siliculosus][more]
OWM73044.19.300e-1363.89hypothetical protein CDL15_Pgr001158 [Punica grana... [more]
PKH47965.19.300e-1363.89hypothetical protein CRG98_050391 [Punica granatum... [more]
XP_012456994.12.300e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
KJB68846.12.300e-1161.11hypothetical protein B456_011G041300 [Gossypium ra... [more]
XP_012456996.12.300e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
PPD68676.12.300e-1161.11hypothetical protein GOBAR_DD34446 [Gossypium barb... [more]
XP_013457327.13.000e-1161.11DNA-binding protein DDB_G0278111 [Medicago truncat... [more]
XP_020092499.13.900e-1159.72DNA-binding protein DDB_G0278111 isoform X1 [Anana... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005007NSK005007Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578262gene_1874Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100617g2gene2123Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00950 ID=NO04G00950|Name=NO04G00950|organism=Nannochloropsis oceanica|type=gene|length=1104bp
ATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGG
AGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGG
CGGCAGAGGCACAAAAAGCCAAGgtgcgtccttgtgatggtagaaagaca
gggaagaggagaataaggtagacataataaagaggtgttgttactcgcat
gccaatcatctgtgcgccgccctattcaattaactctcctttccgcttcc
tcatttctccctttccacacacagCAAGCCGAGATGGAGGAGCGGAGGCA
ATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCC
GGATAGgtaagtgggtgggcggtgggtataaatcgtttattctgatagag
cacggaatacgaggagcctttctgtttgtgatggccgagtgttcgagcag
aacatttccccctttttggaaagaatagacgacaaagccttccatctaga
gataaggctgcctggaagctctttacaatggtcaccctttctcttccgat
gggccagtggagggaatttggtgagctggagaggctgcggtgtaggcctt
gtgccgagattgggcgtttggatatcgttttcttacatcattgtcaagaa
gggacttgagtgctgtatcgagatatatgcacttggaatatccttgaaaa
tctgaacgaaaatttggaaagctatctccgaaagagagggatgtagatga
tatgtctgattggagtgcgtgctccccaatcttatgtcttcccctgtgcc
gattttcagtattgtatccgcccccgacgcgctagtgcacctcatctaca
tattttctttcccccccgcattcatttatgatttcacagCGATCGTCCGC
AAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAAGCCGCGACCTC
AGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCATTCAGATGCTCG
AGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAGTCACCATCCAA
CGGCGGCGGTACTTGGACGAAGACGATGACGACAATGACGACGACTTGTT
GTAG
back to top

protein sequence of NO04G00950.1

>NO04G00950.1-protein ID=NO04G00950.1-protein|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MEPAGEIDLPPGFTPAGGGGMGGMIGGGGMSQEAAEAQKAKQAEMEERRQ
FMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQ
LIQMLEQVSSQVEKKATKVTIQRRRYLDEDDDDNDDDLL*
back to top
Synonyms
Publications