NO04G00950.1, NO04G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00950.1
Unique NameNO04G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr4:306511..307614 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:306511..307614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00950.1 vs.
Match: EWM28461.1 (programmed cell death protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 2.000e-47
Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 0 
Query:    1 MEPAGEIDLPPGFTPAGGGGMGGMIGGGGMSQEAAEAQKAKQAEMEERRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKVTIQRRRYLDEDDDDNDDDLL 140
            MEPAGE+DLPPGFT AG G  G   GG GMS E  EAQKAK AEMEERRQFMLDQIL PEAKERLARIAIVRKEK R V+DML+QAATSGRL GKV+EEQLI+MLEQVSSQV+KKATKVTIQRRR LDED+DDNDDD+L
Sbjct:    1 MEPAGELDLPPGFTAAGAGMSGA--GGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDEDEDDNDDDML 137
The following BLAST results are available for this feature:
BLAST of NO04G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28461.12.000e-4782.01programmed cell death protein 5 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00950NO04G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00950.1.cds1NO04G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00950.1.cds2NO04G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00950.1.cds3NO04G00950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00950.1 ID=NO04G00950.1|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGG
AGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGG
CGGCAGAGGCACAAAAAGCCAAGCAAGCCGAGATGGAGGAGCGGAGGCAA
TTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCCG
GATAGCGATCGTCCGCAAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCT
TGCAAGCCGCGACCTCAGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAG
CTCATTCAGATGCTCGAGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCAC
CAAAGTCACCATCCAACGGCGGCGGTACTTGGACGAAGACGATGACGACA
ATGACGACGACTTGTTGTAG
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protein sequence of NO04G00950.1

>NO04G00950.1-protein ID=NO04G00950.1-protein|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MEPAGEIDLPPGFTPAGGGGMGGMIGGGGMSQEAAEAQKAKQAEMEERRQ
FMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQ
LIQMLEQVSSQVEKKATKVTIQRRRYLDEDDDDNDDDLL*
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mRNA from alignment at chr4:306511..307614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00950.1 ID=NO04G00950.1|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at chr4:306511..307614- (Nannochloropsis oceanica)
ATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGG
AGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGG
CGGCAGAGGCACAAAAAGCCAAGGTGCGTCCTTGTGATGGTAGAAAGACA
GGGAAGAGGAGAATAAGGTAGACATAATAAAGAGGTGTTGTTACTCGCAT
GCCAATCATCTGTGCGCCGCCCTATTCAATTAACTCTCCTTTCCGCTTCC
TCATTTCTCCCTTTCCACACACAGCAAGCCGAGATGGAGGAGCGGAGGCA
ATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCC
GGATAGGTAAGTGGGTGGGCGGTGGGTATAAATCGTTTATTCTGATAGAG
CACGGAATACGAGGAGCCTTTCTGTTTGTGATGGCCGAGTGTTCGAGCAG
AACATTTCCCCCTTTTTGGAAAGAATAGACGACAAAGCCTTCCATCTAGA
GATAAGGCTGCCTGGAAGCTCTTTACAATGGTCACCCTTTCTCTTCCGAT
GGGCCAGTGGAGGGAATTTGGTGAGCTGGAGAGGCTGCGGTGTAGGCCTT
GTGCCGAGATTGGGCGTTTGGATATCGTTTTCTTACATCATTGTCAAGAA
GGGACTTGAGTGCTGTATCGAGATATATGCACTTGGAATATCCTTGAAAA
TCTGAACGAAAATTTGGAAAGCTATCTCCGAAAGAGAGGGATGTAGATGA
TATGTCTGATTGGAGTGCGTGCTCCCCAATCTTATGTCTTCCCCTGTGCC
GATTTTCAGTATTGTATCCGCCCCCGACGCGCTAGTGCACCTCATCTACA
TATTTTCTTTCCCCCCCGCATTCATTTATGATTTCACAGCGATCGTCCGC
AAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAAGCCGCGACCTC
AGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCATTCAGATGCTCG
AGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAGTCACCATCCAA
CGGCGGCGGTACTTGGACGAAGACGATGACGACAATGACGACGACTTGTT
GTAG
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Coding sequence (CDS) from alignment at chr4:306511..307614-

>NO04G00950.1 ID=NO04G00950.1|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr4:306511..307614- (Nannochloropsis oceanica)
ATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGG
AGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGG
CGGCAGAGGCACAAAAAGCCAAGCAAGCCGAGATGGAGGAGCGGAGGCAA
TTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCCG
GATAGCGATCGTCCGCAAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCT
TGCAAGCCGCGACCTCAGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAG
CTCATTCAGATGCTCGAGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCAC
CAAAGTCACCATCCAACGGCGGCGGTACTTGGACGAAGACGATGACGACA
ATGACGACGACTTGTTGTAG
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Synonyms
Publications