NO04G00830, NO04G00830 (gene) Nannochloropsis oceanica

Overview
NameNO04G00830
Unique NameNO04G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length576
Alignment locationchr4:278390..278965 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:278390..278965 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G00830 vs. NCBI_GenBank
Match: EWM28469.1 (hypothetical protein Naga_100190g11 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 3.300e-21
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 0 
Query:    1 MVRLRADKLL-ATSSPSNSNAAASTARSSDSAAEAFPCVLLTLFRLSAVLAWALVKLDAIFSHPSTEIYTRPRMESWKAIAFMAVVVFMPSRQPALFLRFALLWAVLAFGYSFLLPGMVLLNKQRLQGRGLLSLSLSLEEEWLRCAVMANALVGLVLVGKLCL 163
            MVRLRA +LL A S  ++ ++  ++  +S       P +LL L R+  +L + LV +DA  S+ S++ YTR  +E+ K + F AV +FMPSR PALF+R A++W VL FGYS LLP + LL  +    R     S   EEEWLRC ++ NAL G+++V K+CL
Sbjct:    1 MVRLRATRLLHAHSLGNHHDSHTASPLASRLQPPCLPLLLLMLLRVHVMLTFLLVAMDAASSNMSSKAYTRHGIEALKGLLFWAVSIFMPSRDPALFVRLAVVWMVLTFGYSLLLPVVTLLRAE--HRRSSNRRSSMWEEEWLRCLIVLNALAGMMIVVKMCL 161
The following BLAST results are available for this feature:
BLAST of NO04G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28469.13.300e-2143.56hypothetical protein Naga_100190g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005020NSK005020Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00830.1NO04G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578225gene_1861Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100190g11gene2111Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00830.1NO04G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00830 ID=NO04G00830|Name=NO04G00830|organism=Nannochloropsis oceanica|type=gene|length=576bp
ATGGTGCGACTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCCCTTCCAA
TTCCAATGCAGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGG
CGTTCCCTTGTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCG
TGGGCCCTGGTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAAT
TTACACCCGCCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGG
TAGTCGTTTTCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCC
CTGCTTTGGGCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGAAT
GGTATTGCTTAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGT
CTTTGTCTTTGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCG
CTTGTGGGTCTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAA
GAAACGAGGAGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCCGC
AAGCACAAAGACGAAAACAAATTTAA
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protein sequence of NO04G00830.1

>NO04G00830.1-protein ID=NO04G00830.1-protein|Name=NO04G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MVRLRADKLLATSSPSNSNAAASTARSSDSAAEAFPCVLLTLFRLSAVLA
WALVKLDAIFSHPSTEIYTRPRMESWKAIAFMAVVVFMPSRQPALFLRFA
LLWAVLAFGYSFLLPGMVLLNKQRLQGRGLLSLSLSLEEEWLRCAVMANA
LVGLVLVGKLCLGSLHKKRGDGGGRIRRGGRDPQAQRRKQI*
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Synonyms
Publications