NO04G00830.1, NO04G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00830.1
Unique NameNO04G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length576
Alignment locationchr4:278390..278965 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:278390..278965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00830.1 vs.
Match: EWM28469.1 (hypothetical protein Naga_100190g11 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 3.300e-21
Identity = 71/163 (43.56%), Postives = 100/163 (61.35%), Query Frame = 0 
Query:    1 MVRLRADKLLATSSPSNSNAA-ASTARSSDSAAEAFPCVLLTLFRLSAVLAWALVKLDAIFSHPSTEIYTRPRMESWKAIAFMAVVVFMPSRQPALFLRFALLWAVLAFGYSFLLPGMVLLNKQRLQGRGLLSLSLSLEEEWLRCAVMANALVGLVLVGKLCL 163
            MVRLRA +LL   S  N + +  ++  +S       P +LL L R+  +L + LV +DA  S+ S++ YTR  +E+ K + F AV +FMPSR PALF+R A++W VL FGYS LLP + LL  +    R     S   EEEWLRC ++ NAL G+++V K+CL
Sbjct:    1 MVRLRATRLLHAHSLGNHHDSHTASPLASRLQPPCLPLLLLMLLRVHVMLTFLLVAMDAASSNMSSKAYTRHGIEALKGLLFWAVSIFMPSRDPALFVRLAVVWMVLTFGYSLLLPVVTLLRAE--HRRSSNRRSSMWEEEWLRCLIVLNALAGMMIVVKMCL 161
The following BLAST results are available for this feature:
BLAST of NO04G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28469.13.300e-2143.56hypothetical protein Naga_100190g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00830NO04G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00830.1NO04G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00830.1.cds1NO04G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00830.1 ID=NO04G00830.1|Name=NO04G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
ATGGTGCGACTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCCCTTCCAA
TTCCAATGCAGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGG
CGTTCCCTTGTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCG
TGGGCCCTGGTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAAT
TTACACCCGCCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGG
TAGTCGTTTTCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCC
CTGCTTTGGGCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGAAT
GGTATTGCTTAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGT
CTTTGTCTTTGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCG
CTTGTGGGTCTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAA
GAAACGAGGAGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCCGC
AAGCACAAAGACGAAAACAAATTTAA
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protein sequence of NO04G00830.1

>NO04G00830.1-protein ID=NO04G00830.1-protein|Name=NO04G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MVRLRADKLLATSSPSNSNAAASTARSSDSAAEAFPCVLLTLFRLSAVLA
WALVKLDAIFSHPSTEIYTRPRMESWKAIAFMAVVVFMPSRQPALFLRFA
LLWAVLAFGYSFLLPGMVLLNKQRLQGRGLLSLSLSLEEEWLRCAVMANA
LVGLVLVGKLCLGSLHKKRGDGGGRIRRGGRDPQAQRRKQI*
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mRNA from alignment at chr4:278390..278965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00830.1 ID=NO04G00830.1|Name=NO04G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at chr4:278390..278965+ (Nannochloropsis oceanica)
ATGGTGCGACTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCCCTTCCAA
TTCCAATGCAGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGG
CGTTCCCTTGTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCG
TGGGCCCTGGTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAAT
TTACACCCGCCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGG
TAGTCGTTTTCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCC
CTGCTTTGGGCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGAAT
GGTATTGCTTAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGT
CTTTGTCTTTGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCG
CTTGTGGGTCTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAA
GAAACGAGGAGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCCGC
AAGCACAAAGACGAAAACAAATTTAA
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Coding sequence (CDS) from alignment at chr4:278390..278965+

>NO04G00830.1 ID=NO04G00830.1|Name=NO04G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr4:278390..278965+ (Nannochloropsis oceanica)
ATGGTGCGACTGCGGGCTGATAAGCTTTTGGCTACTTCGTCCCCTTCCAA
TTCCAATGCAGCTGCTTCAACTGCTCGATCATCCGACTCAGCTGCTGAGG
CGTTCCCTTGTGTCCTTTTGACCCTCTTTCGCCTCAGCGCCGTGCTTGCG
TGGGCCCTGGTCAAGCTTGATGCCATATTCTCGCACCCTTCGACCGAAAT
TTACACCCGCCCCCGGATGGAATCGTGGAAAGCTATTGCATTCATGGCGG
TAGTCGTTTTCATGCCCTCCCGCCAGCCTGCCCTCTTCCTCCGCTTCGCC
CTGCTTTGGGCAGTGCTTGCTTTTGGGTACAGCTTCCTCCTGCCCGGAAT
GGTATTGCTTAACAAGCAGCGGCTGCAGGGAAGGGGCTTGCTTTCATTGT
CTTTGTCTTTGGAGGAGGAATGGCTGCGATGTGCAGTGATGGCCAACGCG
CTTGTGGGTCTAGTGCTGGTGGGCAAGTTATGTCTGGGATCCCTTCACAA
GAAACGAGGAGACGGAGGAGGAAGAATAAGGCGAGGAGGTCGAGACCCGC
AAGCACAAAGACGAAAACAAATTTAA
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Synonyms
Publications