NO04G00630, NO04G00630 (gene) Nannochloropsis oceanica

Overview
NameNO04G00630
Unique NameNO04G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length673
Alignment locationchr4:224183..224855 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:224183..224855 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00630 vs. NCBI_GenBank
Match: EWM28505.1 (hypothetical protein Naga_100058g16 [Nannochloropsis gaditana])

HSP 1 Score: 121.7 bits (304), Expect = 2.300e-24
Identity = 96/169 (56.80%), Postives = 108/169 (63.91%), Query Frame = 0 
Query:    1 MALAGL-ADYG--SXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLPSANDLFASIDGPAFMGGGGAVRTKRTAQEISATRPSLQVPSSSLGTQPPSQKRLAAAGPSKEGNRSAAKVSAAAKGKTGSNGMLLPPQVSRPGGRGNVVTEDVSAWTSKAGLAKADGNRRKEGE 167
            MALAGL ADYG  S  XXXXXXXXXX               SLL SANDLF +IDGPAFM G  A R+KR A EIS T PSL +PS++  T   S KR AA      G  S    S +++ K G NG+LLPPQVSR GGRGNVVTED+SAWTSKAGLAKA   + +  E
Sbjct:   25 MALAGLVADYGSSSEEXXXXXXXXXXKADRSEPPENAPKKKSLLLSANDLFDTIDGPAFMSGSSAERSKRQAHEISRTHPSLTIPSAT--TLLTSSKRPAA------GTGSKPVSSTSSQAKRGENGLLLPPQVSRRGGRGNVVTEDISAWTSKAGLAKATSKKDRYDE 185
The following BLAST results are available for this feature:
BLAST of NO04G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28505.12.300e-2456.80hypothetical protein Naga_100058g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009742NSK009742Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00630.1NO04G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578142gene_1844Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100058g16gene2092Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00630.1NO04G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00630 ID=NO04G00630|Name=NO04G00630|organism=Nannochloropsis oceanica|type=gene|length=673bp
ATGGCATTGGCAGGACTTGCGGACTACGGCTCGTCATCGGAGGACGAAGA
GGAGCAGCAAAAAGTAGAGGAAGCGAAGCTCCAGgtgtgtaagaagtagc
agtcatccccctcgccttagctaccataaaacctaaacatcccccttcaa
tactccaaacccagCCACCACCTTCTCTTCCGGTTAAGAAGAAGAGTTTG
TTACCCTCGGCGAACGATCTTTTTGCGTCCATCGATGGCCCTGCATTCAT
GGGCGGCGGCGGCGCCGTGCGAACAAAGCGGACAGCTCAAGAAATAAGTG
CCACCCGCCCGTCCCTCCAAGTTCCTTCCTCCAGTCTTGGCACACAACCA
CCTTCGCAGAAACGCCTTGCGGCCGCAGGACCATCAAAAGAAGGGAACAG
ATCTGCGGCAAAAGTGTCGGCCGCGGCGAAAGGAAAGACGGGGAGTAATG
GGATGCTATTGCCTCCACAAGTGAGTCGGCCGGGGGGACGAGGAAATGTG
GTAACAGAGGACGTGTCTGCATGGACGAGCAAGGCCGGACTTGCAAAGGC
GGATGGTAATAGGAGGAAGGAGGGGGAGGGGGCAAGGAGAAGGAAAGAAG
GAGGTGGAGAGAAGAATTAAGAAAAGAAAAGCGTGAAGATAGGCAAATAG
AAATAAAAACGAGTTTTGTACGG
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protein sequence of NO04G00630.1

>NO04G00630.1-protein ID=NO04G00630.1-protein|Name=NO04G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MALAGLADYGSSSEDEEEQQKVEEAKLQPPPSLPVKKKSLLPSANDLFAS
IDGPAFMGGGGAVRTKRTAQEISATRPSLQVPSSSLGTQPPSQKRLAAAG
PSKEGNRSAAKVSAAAKGKTGSNGMLLPPQVSRPGGRGNVVTEDVSAWTS
KAGLAKADGNRRKEGEGARRRKEGGGEKN*
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Synonyms
Publications