NO04G00630.1, NO04G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00630.1
Unique NameNO04G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length593
Alignment locationchr4:224183..224855 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:224183..224855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00630.1 vs.
Match: EWM28505.1 (hypothetical protein Naga_100058g16 [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 3.600e-33
Identity = 100/170 (58.82%), Postives = 118/170 (69.41%), Query Frame = 0 
Query:    1 MALAGL-ADYGSSSEDEEEQQKVEEAKL---QPPPSLPVKKKSLLPSANDLFASIDGPAFMGGGGAVRTKRTAQEISATRPSLQVPSSSLGTQPPSQKRLAAAGPSKEGNRSAAKVSAAAKGKTGSNGMLLPPQVSRPGGRGNVVTEDVSAWTSKAGLAKADGNRRKEGE 167
            MALAGL ADYGSSSE+E+E +  EE+K    +PP + P KKKSLL SANDLF +IDGPAFM G  A R+KR A EIS T PSL +PS++  T   S KR AA      G  S    S +++ K G NG+LLPPQVSR GGRGNVVTED+SAWTSKAGLAKA   + +  E
Sbjct:   25 MALAGLVADYGSSSEEEQEAKVQEESKADRSEPPENAP-KKKSLLLSANDLFDTIDGPAFMSGSSAERSKRQAHEISRTHPSLTIPSAT--TLLTSSKRPAA------GTGSKPVSSTSSQAKRGENGLLLPPQVSRRGGRGNVVTEDISAWTSKAGLAKATSKKDRYDE 185
The following BLAST results are available for this feature:
BLAST of NO04G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28505.13.600e-3358.82hypothetical protein Naga_100058g16 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00630NO04G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00630.1NO04G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00630.1.cds1NO04G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00630.1.cds2NO04G00630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00630.1 ID=NO04G00630.1|Name=NO04G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
ATGGCATTGGCAGGACTTGCGGACTACGGCTCGTCATCGGAGGACGAAGA
GGAGCAGCAAAAAGTAGAGGAAGCGAAGCTCCAGCCACCACCTTCTCTTC
CGGTTAAGAAGAAGAGTTTGTTACCCTCGGCGAACGATCTTTTTGCGTCC
ATCGATGGCCCTGCATTCATGGGCGGCGGCGGCGCCGTGCGAACAAAGCG
GACAGCTCAAGAAATAAGTGCCACCCGCCCGTCCCTCCAAGTTCCTTCCT
CCAGTCTTGGCACACAACCACCTTCGCAGAAACGCCTTGCGGCCGCAGGA
CCATCAAAAGAAGGGAACAGATCTGCGGCAAAAGTGTCGGCCGCGGCGAA
AGGAAAGACGGGGAGTAATGGGATGCTATTGCCTCCACAAGTGAGTCGGC
CGGGGGGACGAGGAAATGTGGTAACAGAGGACGTGTCTGCATGGACGAGC
AAGGCCGGACTTGCAAAGGCGGATGGTAATAGGAGGAAGGAGGGGGAGGG
GGCAAGGAGAAGGAAAGAAGGAGGTGGAGAGAAGAATTAAGAAAAGAAAA
GCGTGAAGATAGGCAAATAGAAATAAAAACGAGTTTTGTACGG
back to top

protein sequence of NO04G00630.1

>NO04G00630.1-protein ID=NO04G00630.1-protein|Name=NO04G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MALAGLADYGSSSEDEEEQQKVEEAKLQPPPSLPVKKKSLLPSANDLFAS
IDGPAFMGGGGAVRTKRTAQEISATRPSLQVPSSSLGTQPPSQKRLAAAG
PSKEGNRSAAKVSAAAKGKTGSNGMLLPPQVSRPGGRGNVVTEDVSAWTS
KAGLAKADGNRRKEGEGARRRKEGGGEKN*
back to top

mRNA from alignment at chr4:224183..224855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00630.1 ID=NO04G00630.1|Name=NO04G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=673bp|location=Sequence derived from alignment at chr4:224183..224855+ (Nannochloropsis oceanica)
ATGGCATTGGCAGGACTTGCGGACTACGGCTCGTCATCGGAGGACGAAGA
GGAGCAGCAAAAAGTAGAGGAAGCGAAGCTCCAGGTGTGTAAGAAGTAGC
AGTCATCCCCCTCGCCTTAGCTACCATAAAACCTAAACATCCCCCTTCAA
TACTCCAAACCCAGCCACCACCTTCTCTTCCGGTTAAGAAGAAGAGTTTG
TTACCCTCGGCGAACGATCTTTTTGCGTCCATCGATGGCCCTGCATTCAT
GGGCGGCGGCGGCGCCGTGCGAACAAAGCGGACAGCTCAAGAAATAAGTG
CCACCCGCCCGTCCCTCCAAGTTCCTTCCTCCAGTCTTGGCACACAACCA
CCTTCGCAGAAACGCCTTGCGGCCGCAGGACCATCAAAAGAAGGGAACAG
ATCTGCGGCAAAAGTGTCGGCCGCGGCGAAAGGAAAGACGGGGAGTAATG
GGATGCTATTGCCTCCACAAGTGAGTCGGCCGGGGGGACGAGGAAATGTG
GTAACAGAGGACGTGTCTGCATGGACGAGCAAGGCCGGACTTGCAAAGGC
GGATGGTAATAGGAGGAAGGAGGGGGAGGGGGCAAGGAGAAGGAAAGAAG
GAGGTGGAGAGAAGAATTAAGAAAAGAAAAGCGTGAAGATAGGCAAATAG
AAATAAAAACGAGTTTTGTACGG
back to top

Coding sequence (CDS) from alignment at chr4:224183..224855+

>NO04G00630.1 ID=NO04G00630.1|Name=NO04G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr4:224183..224855+ (Nannochloropsis oceanica)
ATGGCATTGGCAGGACTTGCGGACTACGGCTCGTCATCGGAGGACGAAGA
GGAGCAGCAAAAAGTAGAGGAAGCGAAGCTCCAGCCACCACCTTCTCTTC
CGGTTAAGAAGAAGAGTTTGTTACCCTCGGCGAACGATCTTTTTGCGTCC
ATCGATGGCCCTGCATTCATGGGCGGCGGCGGCGCCGTGCGAACAAAGCG
GACAGCTCAAGAAATAAGTGCCACCCGCCCGTCCCTCCAAGTTCCTTCCT
CCAGTCTTGGCACACAACCACCTTCGCAGAAACGCCTTGCGGCCGCAGGA
CCATCAAAAGAAGGGAACAGATCTGCGGCAAAAGTGTCGGCCGCGGCGAA
AGGAAAGACGGGGAGTAATGGGATGCTATTGCCTCCACAAGTGAGTCGGC
CGGGGGGACGAGGAAATGTGGTAACAGAGGACGTGTCTGCATGGACGAGC
AAGGCCGGACTTGCAAAGGCGGATGGTAATAGGAGGAAGGAGGGGGAGGG
GGCAAGGAGAAGGAAAGAAGGAGGTGGAGAGAAGAATTAA
back to top
Synonyms
Publications