NO04G00300, NO04G00300 (gene) Nannochloropsis oceanica

Overview
NameNO04G00300
Unique NameNO04G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2600
Alignment locationchr4:134911..137510 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:134911..137510 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015414Tvp38/TMEM64-like
IPR032816SNARE_assoc
Homology
BLAST of NO04G00300 vs. NCBI_GenBank
Match: EWM28436.1 (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana])

HSP 1 Score: 304.7 bits (779), Expect = 6.000e-79
Identity = 229/467 (49.04%), Postives = 280/467 (59.96%), Query Frame = 0
Query:   36 LHHVDVEAK--NSRSLPLPLLPLNTPDPTTPSLPLVHADIHSATTSTSNNSREGCDGSRQPPAEPMSP----LRSRGISTSSTLGPSSAPRTWRLYFHNHRRFXXXXXLVTTFLIIGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEGRQRGKSH-LLHEILLLVLSVVLLVALGFLMRRYTAKYAKHL 496
            LH V++  K      LP  L   + P+ T+ +      D    T  + +NS      +R P +  + P    L ++  S S+T+G  S     R +  NHRRF     LV   L +G++A+A+YKDE LQ AQYIQD+APLSAVYM+LLL LWI+LCLPATLLE++AGMIYTWPVA VS+TVGKQ+G NLGF +GQCITTGSF++ FL +L + +Q+A AR  A+  +SS       G   GG LE                          +               P  N  + TP     V                      XXXXXXXXXXXXXXXXXXXXXX  TP +AL WAVK HPWQICFLLRLLP+PI  KNYGM+CLPFP+L+Y+LC  VAE+PFTILW+HIG+S RSLLEAM G   GK     HEILLLVLS+VLLVALG LMRRYTA+YAK+L
Sbjct:    3 LHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCS-STTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASS------AGPRAGGELEXXXXXXXXXXXXXXXXXXXXXXXRQVA---------------PQANGQVPTPHVASMVG--------------GDARPARXXXXXXXXXXXXXXXXXXXXXXXGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYL 433          
BLAST of NO04G00300 vs. NCBI_GenBank
Match: EWM26339.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 156.0 bits (393), Expect = 3.400e-34
Identity = 126/392 (32.14%), Postives = 193/392 (49.23%), Query Frame = 0
Query:  108 STSSTLGPSSAPRTWRLYFHNHRRFXXXXXLVTTFLI---IGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESS-SETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEGRQRG-KSH--LLHEILLLVLSVVLLVALGFLMRRYTAKYA 493
            S   T  PSS     R  +   RR      +++  LI    G+Y   RY+D+ L+ +++I+  AP SAVY +L+  LWI+LCLP+T++E++ G I+++PVA++++TVGKQ+G  L F L +   + + ++                  A+G SS S T G                KE  ES +EN           +    G + S      L H+      P A  P ++P+                                        +   I A+  A++ HPW+I FLLR LP+PI++KNYGM+ LP P  V+ LC FVA +PFT++WV++G+ST++LLEA+ G     K H     E+ LLV+ + LL+ L F++RRYT +YA
Sbjct:  143 SVGPTALPSSRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRD------------------ALGHSSHSPTRG----------------KEPNESVVEN-----------NDQEGGDAPS------LRHSR----FPAAARP-SKPM--------------------------------------SKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYA 440          
BLAST of NO04G00300 vs. NCBI_GenBank
Match: EWM20987.1 (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 1.000e-14
Identity = 84/318 (26.42%), Postives = 122/318 (38.36%), Query Frame = 0
Query:  138 LVTTFLIIGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEG 456
            +V+  L+ G   +A +      +  ++Q +APLSA+Y +   VLW++LCLP+TL+E+  G I+  PV ++++ V K  G  L F LG+C+   S ++  L                                                                                            + PV                                   XXXXXXXXX      AL  A++ HPW++  LLR + LPIAVKNYGM+ LP P  V+ LC   A LP+T+LW H G S+RSL + + G
Sbjct:   97 VVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLL--------------------------------------------------------------------------------------------LPPV----------------------------------RXXXXXXXXXXXXXXRALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGG 288          
The following BLAST results are available for this feature:
BLAST of NO04G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28436.16.000e-7949.04hypothetical protein Naga_100924g3 [Nannochloropsi... [more]
EWM26339.13.400e-3432.14SNARE associated Golgi protein [Nannochloropsis ga... [more]
EWM20987.11.000e-1426.42SNARE associated Golgi protein [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004982NSK004982Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00300.1NO04G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659579gene_1812Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100924g3gene2147Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00300.1NO04G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00300 ID=NO04G00300|Name=NO04G00300|organism=Nannochloropsis oceanica|type=gene|length=2600bp
CAGCTCCTTCCCACCACAGACTATACCCCCTTTAAGTCTCTACTGTGTAA
TTTATATCGCTGTGTGCGGTTACCCGTTGTGCTCCGGTTGAAGAGATGCG
TTGATTCATGAATCATGATAGATGATTCATCCTGTTGGCGGGACCGCGGC
GAGCGCTCGATCAGGTGCCAGCTTGCCGCGCATCCCTCCAGATATCGACC
CGGTAACCACCATATGCGCTAATCCCTTCATGACATAATTAAACAGGACT
GACGTTGACAAGCTTGAGTCCCCCGGCAAGGTCTGGTGGCACACGGGGCC
ATATCGCCTATCATCAAACACGCGTGCCCTCGGTTCATCAGGATAGGATG
CTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGTCGA
ACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTATCGG
AGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCTCTG
CCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCCCCT
GGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACAGTA
GAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCACCC
CTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTCAGC
TCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTTTCC
TCCTCTTCCTCGTCACGACCTTCTTGATTATTGGAACATATGCGATGGCC
CGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCAGGC
GCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCGTGC
TCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTACACG
TGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAATAA
CTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGGAGG
TGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGGGGA
GCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGGAGA
GATCGAGGGAGGGGCCTTGGAAGTAGGCGCGGATAAGGAGAACGAGGAAT
CCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGGAGC
AGTCACAACAACGGTAGCAGCACGTCAATAGACTCCGCTTTGAACCTACC
ACATACGAACACCACCATTTACACCCCTACTGCTGTAGAGCCAGTAGCAG
AACCCCTTCCCTTATCCCTCCCCCCCTCATCTGAACTCCCCGTTCCTGTT
CCCCCGGCTACTTCGCCCCCCTCCCCACCCAGAGTCCTTTCTCAGCCTCC
TCCTTCCCCTCTTCGTCGCCGCCGACGCAAAACGACCCCCATTGAGGCCT
TGACGTGGGCTGTCAAAACACACCCCTGGCAAATATGCTTCCTCCTTCGA
CTCCTCCCACTCCCGATTGCTGTCAAAAACTATGGCATGTCGTGCTTACC
CTTCCCTCTCTTAGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGCCCT
TCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTGGAA
GCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGATATT
GTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTAATGA
GGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAAAAA
GAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGCAGC
AGCAGCAGCAGCAGGAGGAGGGGTAGGAGACGGAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAA
GGAGAGGGGCTATAGAGGAAGGGATTACCGCTCCTGGATGGTAGCTGATT
GTGGAGAGTCGCAGGGGATGCGAGAACGGCAACAACACAAAGCAAGTAAT
AAGCAGGTTTGTAGAAATATATAGAAGAGAGGAAGAGGGACGGCAGGGAA
AGCTCGCGTGGAACTCGCCTGCATGCACCGCGTCTTTTTCGCACGCGGCC
GGGACGAGGAGGTAATAATAAGTCTATAGCAGTAGCAGAGTAGCAGTGTG
TGGTGGTTGTGCACCCCCGCGCGTGTATGTGTTTTAAGAGCAGCAATTTC
CAGCAAGAGTGGCAGTAGCAACAGGAGTGGTACCAGTAGCGGCAGCAGTA
GCAGCAGCAGCGGCAGTAGAAATAGCAGCAGTAGCTGCAGCAGCAGCAAT
GACGTAAGTACACATTACAGAGGACAAATGCAATAACACTATTAAGGCCG
AGAAAATAAGCAGTAGCACCAGCAACAACGTTTTAAGGACACTGAATAGT
GTGTGGGATGATAAAGATGAGTATGAGGACGAGAAACACCATACGGACGG
GTCCAGGCGAGACACATAAGTCATAGAAGAAAACAAAGTATTTTCTCCCG
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protein sequence of NO04G00300.1

>NO04G00300.1-protein ID=NO04G00300.1-protein|Name=NO04G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MLDAAAIPTDPHDDTRVEQPTHVVDPAHSLPDLSELHHVDVEAKNSRSLP
LPLLPLNTPDPTTPSLPLVHADIHSATTSTSNNSREGCDGSRQPPAEPMS
PLRSRGISTSSTLGPSSAPRTWRLYFHNHRRFFFLLFLVTTFLIIGTYAM
ARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIY
TWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEAR
GAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSG
SSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLPPSSELPVP
VPPATSPPSPPRVLSQPPPSPLRRRRRKTTPIEALTWAVKTHPWQICFLL
RLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLL
EAMEGRQRGKSHLLHEILLLVLSVVLLVALGFLMRRYTAKYAKHLEEERE
KEEAEEEAEEERRRVAAAAAAAGGGVGDGGGGGGGEGGGGGGGPVARPST
EGEGL*
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Synonyms
Publications