NO04G00300.1, NO04G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00300.1
Unique NameNO04G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2600
Alignment locationchr4:134911..137510 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:134911..137510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00300.1 vs.
Match: EWM28436.1 (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 1.200e-87
Identity = 254/521 (48.75%), Postives = 311/521 (59.69%), Query Frame = 0 
Query:   36 LHHVDVEAK--NSRSLPLPLLPLNTPDPTTPSLPLVHADIHSATTSTSNNSREGCDGSRQPPAEPMSP----LRSRGISTSSTLGPSSAPRTWRLYFHNHRRFFFLLFLVTTFLIIGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLPPSSELPVPVPPATSPPSPPRVLSQPPPSPLRRRRRKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEGRQRGKSH-LLHEILLLVLSVVLLVALGFLMRRYTAKYAKHLEEEREKEE---AEEEAEEE--RRRVAAAAAAAGGGVGDGGGGGGGEGGGGGGGP 545
            LH V++  K      LP  L   + P+ T+ +      D    T  + +NS      +R P +  + P    L ++  S S+T+G  S     R +  NHRRF FL FLV   L +G++A+A+YKDE LQ AQYIQD+APLSAVYM+LLL LWI+LCLPATLLE++AGMIYTWPVA VS+TVGKQ+G NLGF +GQCITTGSF++ FL +L + +Q+A AR  A+  +SS       G   GG LE+    E EE   E      +  T G                 P  N  + TP     V      + PP    P PV  + +PPS  R          RR+RRK TP +AL WAVK HPWQICFLLRLLP+PI  KNYGM+CLPFP+L+Y+LC  VAE+PFTILW+HIG+S RSLLEAM G   GK     HEILLLVLS+VLLVALG LMRRYTA+YAK+LEEEREK E    EEEA+EE  RR           G G     GG E  GGG  P
Sbjct:    3 LHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCS-STTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASS------AGPRAGGELEMVVVTEEEEEGEEEE----EEQTVGGERQVA-----------PQANGQVPTPHVASMVGGDARPARPP----PRPVSSSLAPPSTRR----------RRKRRKGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYLEEEREKNEEVAMEEEAKEEDVRRGEGKGEGGQWKGKGQREEAGGHEEEGGGLAP 487
The following BLAST results are available for this feature:
BLAST of NO04G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28436.11.200e-8748.75hypothetical protein Naga_100924g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00300NO04G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00300.1NO04G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00300.1.cds1NO04G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00300.1 ID=NO04G00300.1|Name=NO04G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2600bp
CAGCTCCTTCCCACCACAGACTATACCCCCTTTAAGTCTCTACTGTGTAA
TTTATATCGCTGTGTGCGGTTACCCGTTGTGCTCCGGTTGAAGAGATGCG
TTGATTCATGAATCATGATAGATGATTCATCCTGTTGGCGGGACCGCGGC
GAGCGCTCGATCAGGTGCCAGCTTGCCGCGCATCCCTCCAGATATCGACC
CGGTAACCACCATATGCGCTAATCCCTTCATGACATAATTAAACAGGACT
GACGTTGACAAGCTTGAGTCCCCCGGCAAGGTCTGGTGGCACACGGGGCC
ATATCGCCTATCATCAAACACGCGTGCCCTCGGTTCATCAGGATAGGATG
CTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGTCGA
ACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTATCGG
AGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCTCTG
CCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCCCCT
GGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACAGTA
GAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCACCC
CTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTCAGC
TCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTTTCC
TCCTCTTCCTCGTCACGACCTTCTTGATTATTGGAACATATGCGATGGCC
CGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCAGGC
GCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCGTGC
TCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTACACG
TGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAATAA
CTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGGAGG
TGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGGGGA
GCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGGAGA
GATCGAGGGAGGGGCCTTGGAAGTAGGCGCGGATAAGGAGAACGAGGAAT
CCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGGAGC
AGTCACAACAACGGTAGCAGCACGTCAATAGACTCCGCTTTGAACCTACC
ACATACGAACACCACCATTTACACCCCTACTGCTGTAGAGCCAGTAGCAG
AACCCCTTCCCTTATCCCTCCCCCCCTCATCTGAACTCCCCGTTCCTGTT
CCCCCGGCTACTTCGCCCCCCTCCCCACCCAGAGTCCTTTCTCAGCCTCC
TCCTTCCCCTCTTCGTCGCCGCCGACGCAAAACGACCCCCATTGAGGCCT
TGACGTGGGCTGTCAAAACACACCCCTGGCAAATATGCTTCCTCCTTCGA
CTCCTCCCACTCCCGATTGCTGTCAAAAACTATGGCATGTCGTGCTTACC
CTTCCCTCTCTTAGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGCCCT
TCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTGGAA
GCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGATATT
GTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTAATGA
GGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAAAAA
GAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGCAGC
AGCAGCAGCAGCAGGAGGAGGGGTAGGAGACGGAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAA
GGAGAGGGGCTATAGAGGAAGGGATTACCGCTCCTGGATGGTAGCTGATT
GTGGAGAGTCGCAGGGGATGCGAGAACGGCAACAACACAAAGCAAGTAAT
AAGCAGGTTTGTAGAAATATATAGAAGAGAGGAAGAGGGACGGCAGGGAA
AGCTCGCGTGGAACTCGCCTGCATGCACCGCGTCTTTTTCGCACGCGGCC
GGGACGAGGAGGTAATAATAAGTCTATAGCAGTAGCAGAGTAGCAGTGTG
TGGTGGTTGTGCACCCCCGCGCGTGTATGTGTTTTAAGAGCAGCAATTTC
CAGCAAGAGTGGCAGTAGCAACAGGAGTGGTACCAGTAGCGGCAGCAGTA
GCAGCAGCAGCGGCAGTAGAAATAGCAGCAGTAGCTGCAGCAGCAGCAAT
GACGTAAGTACACATTACAGAGGACAAATGCAATAACACTATTAAGGCCG
AGAAAATAAGCAGTAGCACCAGCAACAACGTTTTAAGGACACTGAATAGT
GTGTGGGATGATAAAGATGAGTATGAGGACGAGAAACACCATACGGACGG
GTCCAGGCGAGACACATAAGTCATAGAAGAAAACAAAGTATTTTCTCCCG
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protein sequence of NO04G00300.1

>NO04G00300.1-protein ID=NO04G00300.1-protein|Name=NO04G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MLDAAAIPTDPHDDTRVEQPTHVVDPAHSLPDLSELHHVDVEAKNSRSLP
LPLLPLNTPDPTTPSLPLVHADIHSATTSTSNNSREGCDGSRQPPAEPMS
PLRSRGISTSSTLGPSSAPRTWRLYFHNHRRFFFLLFLVTTFLIIGTYAM
ARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIY
TWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEAR
GAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSG
SSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLPPSSELPVP
VPPATSPPSPPRVLSQPPPSPLRRRRRKTTPIEALTWAVKTHPWQICFLL
RLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLL
EAMEGRQRGKSHLLHEILLLVLSVVLLVALGFLMRRYTAKYAKHLEEERE
KEEAEEEAEEERRRVAAAAAAAGGGVGDGGGGGGGEGGGGGGGPVARPST
EGEGL*
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mRNA from alignment at chr4:134911..137510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00300.1 ID=NO04G00300.1|Name=NO04G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2600bp|location=Sequence derived from alignment at chr4:134911..137510+ (Nannochloropsis oceanica)
CAGCTCCTTCCCACCACAGACTATACCCCCTTTAAGTCTCTACTGTGTAA
TTTATATCGCTGTGTGCGGTTACCCGTTGTGCTCCGGTTGAAGAGATGCG
TTGATTCATGAATCATGATAGATGATTCATCCTGTTGGCGGGACCGCGGC
GAGCGCTCGATCAGGTGCCAGCTTGCCGCGCATCCCTCCAGATATCGACC
CGGTAACCACCATATGCGCTAATCCCTTCATGACATAATTAAACAGGACT
GACGTTGACAAGCTTGAGTCCCCCGGCAAGGTCTGGTGGCACACGGGGCC
ATATCGCCTATCATCAAACACGCGTGCCCTCGGTTCATCAGGATAGGATG
CTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGTCGA
ACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTATCGG
AGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCTCTG
CCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCCCCT
GGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACAGTA
GAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCACCC
CTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTCAGC
TCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTTTCC
TCCTCTTCCTCGTCACGACCTTCTTGATTATTGGAACATATGCGATGGCC
CGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCAGGC
GCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCGTGC
TCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTACACG
TGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAATAA
CTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGGAGG
TGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGGGGA
GCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGGAGA
GATCGAGGGAGGGGCCTTGGAAGTAGGCGCGGATAAGGAGAACGAGGAAT
CCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGGAGC
AGTCACAACAACGGTAGCAGCACGTCAATAGACTCCGCTTTGAACCTACC
ACATACGAACACCACCATTTACACCCCTACTGCTGTAGAGCCAGTAGCAG
AACCCCTTCCCTTATCCCTCCCCCCCTCATCTGAACTCCCCGTTCCTGTT
CCCCCGGCTACTTCGCCCCCCTCCCCACCCAGAGTCCTTTCTCAGCCTCC
TCCTTCCCCTCTTCGTCGCCGCCGACGCAAAACGACCCCCATTGAGGCCT
TGACGTGGGCTGTCAAAACACACCCCTGGCAAATATGCTTCCTCCTTCGA
CTCCTCCCACTCCCGATTGCTGTCAAAAACTATGGCATGTCGTGCTTACC
CTTCCCTCTCTTAGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGCCCT
TCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTGGAA
GCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGATATT
GTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTAATGA
GGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAAAAA
GAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGCAGC
AGCAGCAGCAGCAGGAGGAGGGGTAGGAGACGGAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAA
GGAGAGGGGCTATAGAGGAAGGGATTACCGCTCCTGGATGGTAGCTGATT
GTGGAGAGTCGCAGGGGATGCGAGAACGGCAACAACACAAAGCAAGTAAT
AAGCAGGTTTGTAGAAATATATAGAAGAGAGGAAGAGGGACGGCAGGGAA
AGCTCGCGTGGAACTCGCCTGCATGCACCGCGTCTTTTTCGCACGCGGCC
GGGACGAGGAGGTAATAATAAGTCTATAGCAGTAGCAGAGTAGCAGTGTG
TGGTGGTTGTGCACCCCCGCGCGTGTATGTGTTTTAAGAGCAGCAATTTC
CAGCAAGAGTGGCAGTAGCAACAGGAGTGGTACCAGTAGCGGCAGCAGTA
GCAGCAGCAGCGGCAGTAGAAATAGCAGCAGTAGCTGCAGCAGCAGCAAT
GACGTAAGTACACATTACAGAGGACAAATGCAATAACACTATTAAGGCCG
AGAAAATAAGCAGTAGCACCAGCAACAACGTTTTAAGGACACTGAATAGT
GTGTGGGATGATAAAGATGAGTATGAGGACGAGAAACACCATACGGACGG
GTCCAGGCGAGACACATAAGTCATAGAAGAAAACAAAGTATTTTCTCCCG
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Coding sequence (CDS) from alignment at chr4:134911..137510+

>NO04G00300.1 ID=NO04G00300.1|Name=NO04G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr4:134911..137510+ (Nannochloropsis oceanica)
ATGCTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGT
CGAACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTAT
CGGAGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCT
CTGCCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCC
CCTGGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACA
GTAGAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCA
CCCCTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTC
AGCTCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTT
TCCTCCTCTTCCTCGTCACGACCTTCTTGATTATTGGAACATATGCGATG
GCCCGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCA
GGCGCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCG
TGCTCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTAC
ACGTGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAA
TAACTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGG
AGGTGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGG
GGAGCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGG
AGAGATCGAGGGAGGGGCCTTGGAAGTAGGCGCGGATAAGGAGAACGAGG
AATCCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGG
AGCAGTCACAACAACGGTAGCAGCACGTCAATAGACTCCGCTTTGAACCT
ACCACATACGAACACCACCATTTACACCCCTACTGCTGTAGAGCCAGTAG
CAGAACCCCTTCCCTTATCCCTCCCCCCCTCATCTGAACTCCCCGTTCCT
GTTCCCCCGGCTACTTCGCCCCCCTCCCCACCCAGAGTCCTTTCTCAGCC
TCCTCCTTCCCCTCTTCGTCGCCGCCGACGCAAAACGACCCCCATTGAGG
CCTTGACGTGGGCTGTCAAAACACACCCCTGGCAAATATGCTTCCTCCTT
CGACTCCTCCCACTCCCGATTGCTGTCAAAAACTATGGCATGTCGTGCTT
ACCCTTCCCTCTCTTAGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGC
CCTTCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTG
GAAGCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGAT
ATTGTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTAA
TGAGGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAA
AAAGAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGC
AGCAGCAGCAGCAGCAGGAGGAGGGGTAGGAGACGGAGGAGGAGGAGGAG
GAGGAGAAGGAGGAGGAGGAGGAGGAGGACCGGTGGCGAGACCAAGTACA
GAAGGAGAGGGGCTATAG
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Synonyms
Publications