NO04G00140, NO04G00140 (gene) Nannochloropsis oceanica

Overview
NameNO04G00140
Unique NameNO04G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2168
Alignment locationchr4:62498..64665 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:62498..64665 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR085ncniR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612101gene_10665Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00140.1NO04G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00140.2NO04G00140.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00140.3NO04G00140.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00140.4NO04G00140.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00140.5NO04G00140.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00140.1NO04G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00140.2NO04G00140.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00140.3NO04G00140.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00140.4NO04G00140.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00140.5NO04G00140.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00140 ID=NO04G00140|Name=NO04G00140|organism=Nannochloropsis oceanica|type=gene|length=2168bp
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGgtaggtgaatggttgaagatgagaagatggacgagaga
aggaaaaaagtatttagtaaactgtgcccccacttaccaccacttcattt
tctttgttcatgactctttccgtccctcattcgccttcccccgcctcgtt
ccctccctccttctcgcactcgacgtacgtcccaccctcttcaattcccc
agCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGC
GCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAG
GCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAG
AGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTT
CACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAG
AGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTC
CCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGA
CCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATAC
AACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCAT
GGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGC
TTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCT
CCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGA
GGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTC
GGTATTGGCAAGGGCGGgtaaggaggggaggaagaaaggtagggggagga
cgggaaggggaggcaaggggagagaaggatgcttctctttactcttgtta
agtggcagacgactgtagggtaggagccggcgagggtggaagcaggatga
aaatatcttgcagagcaacagtcacaagcaggcggcgtacgaagaattta
gtaaatgcatacactctcccaccctttctcccccctctccttccctctcg
tcctccctccctcctttccttagGCATATCATCCCTTGCACGTAACCCTG
GGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGCGCGGCGCTGGGGGCG
GGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGAGGACGGCAGAGGTTT
TGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAAGGAGAAGGAGAAGGG
AGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCGGGTTCGAGATTTGGC
GGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAGAGGGAAGAACGGAGG
GCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAGGTGGAAGAGGAGGAG
GAGGAAGTGAGGGAGATCACGGCCACACTCACGGCCTGCAGGCGGATACT
TGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGTGTTGGCAAGGGAAAG
AGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTTGCGACAGGTGGGTCG
TCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTGCCTTTGAGAGCAGCA
GCTGGATCGCTACCAAGGCACCCAGATGGGCGTATATGTAATAAGACTGA
CGAGGAGGGAGAGAGGTAGGCCCTGGAAATTGTGCCTGTTCACATATCAA
GTAGCCATGAGAGATGGAGACCCCTGCCGGCCTTCAAACCACAACACAAG
GAAGCACACCAACCGACG
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protein sequence of NO04G00140.1

>NO04G00140.1-protein ID=NO04G00140.1-protein|Name=NO04G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MPPPTPKDEVKYCPQHVSLQAFPALSSSSSSCCCFSCSSSSCSSSTCHSQ
ANVAANSSTSSSHEASAWKYKVVRGSLYVVGPAIETLAEAGHAYCMDHTT
SAAAAPACDIMPSLIQAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQA
EGEKEAGIEDCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKR
VDENELLSSAPSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYN
STEGVPRSFSSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPP
LLYDPLPLYVYRTSGEGRALAMSVLFLPGEWLRYWQGRAYHPLHVTLGFE
RQDERDQEARRWGRVRVLGYGLSRRRTAEVLEALVNVLVKGEGEGEGRKG
GQLGTFLPRVRDLAVEVMRVLERRIEGRTEGGRENEEENEEEVEEEEEEV
REITATLTACRRILDSMAGGSASGLCWQGKEEEKETPLPLELATGGSSLV
RYAARGRGCL*
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protein sequence of NO04G00140.2

>NO04G00140.2-protein ID=NO04G00140.2-protein|Name=NO04G00140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MPPPTPKDEVKYCPQHVSLQAFPALSSSSSSCCCFSCSSSSCSSSTCHSQ
ANVAANSSTSSSHEASAWKYKVVRGSLYVVGPAIETLAEAGHAYCMDHTT
SAAAAPACDIMPSLIQAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQA
EGEKEAGIEDCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKR
VDENELLSSAPSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYN
STEGVPRSFSSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPP
LLYDPLPLYVYRTSGEGRALAMSVLFLPGEWLRYWQGRVRRGGRKAYHPL
HVTLGFERQDERDQEARRWGRVRVLGYGLSRRRTAEVLEALVNVLVKGEG
EGEGRKGGQLGTFLPRVRDLAVEVMRVLERRIEGRTEGGRENEEENEEEV
EEEEEEVREITATLTACRRILDSMAGGSASGLCWQGKEEEKETPLPLELA
TGGSSLVRYAARGRGCL*
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protein sequence of NO04G00140.3

>NO04G00140.3-protein ID=NO04G00140.3-protein|Name=NO04G00140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MRRWTREGKKYLVNCAPTYHHFIFFVHDSFRPSFAFPRLVPSLLLALDVR
PTLFNSPAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQAEGEKEAGIE
DCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKRVDENELLSS
APSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYNSTEGVPRSF
SSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPPLLYDPLPLY
VYRTSGEGRALAMSVLFLPGEWLRYWQGRVRRGGRKAYHPLHVTLGFERQ
DERDQEARRWGRVRVLGYGLSRRRTAEVLEALVNVLVKGEGEGEGRKGGQ
LGTFLPRVRDLAVEVMRVLERRIEGRTEGGRENEEENEEEVEEEEEEVRE
ITATLTACRRILDSMAGGSASGLCWQGKEEEKETPLPLELATGGSSLVRY
AARGRGCL*
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protein sequence of NO04G00140.4

>NO04G00140.4-protein ID=NO04G00140.4-protein|Name=NO04G00140.4|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRRWTREGKKYLVNCAPTYHHFIFFVHDSFRPSFAFPRLVPSLLLALDVR
PTLFNSPAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQAEGEKEAGIE
DCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKRVDENELLSS
APSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYNSTEGVPRSF
SSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPPLLYDPLPLY
VYRTSGEGRALAMSVLFLPGEWLRYWQGRAYHPLHVTLGFERQDERDQEA
RRWGRVRVLGYGLSRRRTAEVLEALVNVLVKGEGEGEGRKGGQLGTFLPR
VRDLAVEVMRVLERRIEGRTEGGRENEEENEEEVEEEEEEVREITATLTA
CRRILDSMAGGSASGLCWQGKEEEKETPLPLELATGGSSLVRYAARGRGC
L*
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protein sequence of NO04G00140.5

>NO04G00140.5-protein ID=NO04G00140.5-protein|Name=NO04G00140.5|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MPPPTPKDEVKYCPQHVSLQAFPALSSSSSSCCCFSCSSSSCSSSTCHSQ
ANVAANSSTSSSHEASAWKYKVVRGSLYVVGPAIETLAEAGHAYCMDHTT
SAAAAPACDIMPSLIQAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQA
EGEKEAGIEDCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKR
VDENELLSSAPSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYN
STEGVPRSFSSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPP
LLYDPLPLYVYRTSGEGRALAMSVLFLPGEWLRYWQGRVRRGGRKVGGGR
EGEARGEKDASLYSC*
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Synonyms
Publications