NO04G00140.5, NO04G00140.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00140.5
Unique NameNO04G00140.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1978
Alignment locationchr4:62498..64665 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:62498..64665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00140.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00140NO04G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00140.5NO04G00140.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00140.5.cds1NO04G00140.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00140.5.cds2NO04G00140.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00140.5 ID=NO04G00140.5|Name=NO04G00140.5|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGT
CGTGCACAGCGCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAAC
CGAAATTCAGGCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAG
GGAGAGACAGAGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCT
ACTCCTACTTCACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGA
GAGGAAAAAGAGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTC
GGCGTAGCTCCCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGAC
GAGAAAGAGACCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGC
AGATCCATACAACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTT
CCTCTTCCATGGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCT
TCCGCCCTGCTTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCC
TCACATACCTCCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGA
CAAGTGGGGAGGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGG
GAGTGGCTTCGGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGT
AGGGGGAGGACGGGAAGGGGAGGCAAGGGGAGAGAAGGATGCTTCTCTTT
ACTCTTGTTAAGTGGCAGACGACTGTAGGGTAGGAGCCGGCGAGGGTGGA
AGCAGGATGAAAATATCTTGCAGAGCAACAGTCACAAGCAGGCGGCGTAC
GAAGAATTTAGTAAATGCATACACTCTCCCACCCTTTCTCCCCCCTCTCC
TTCCCTCTCGTCCTCCCTCCCTCCTTTCCTTAGGCATATCATCCCTTGCA
CGTAACCCTGGGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGCGCGGC
GCTGGGGGCGGGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGAGGACG
GCAGAGGTTTTGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAAGGAGA
AGGAGAAGGGAGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCGGGTTC
GAGATTTGGCGGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAGAGGGA
AGAACGGAGGGCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAGGTGGA
AGAGGAGGAGGAGGAAGTGAGGGAGATCACGGCCACACTCACGGCCTGCA
GGCGGATACTTGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGTGTTGG
CAAGGGAAAGAGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTTGCGAC
AGGTGGGTCGTCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTGCCTTT
GAGAGCAGCAGCTGGATCGCTACCAAGGCACCCAGATGGGCGTATATGTA
ATAAGACTGACGAGGAGGGAGAGAGGTAGGCCCTGGAAATTGTGCCTGTT
CACATATCAAGTAGCCATGAGAGATGGAGACCCCTGCCGGCCTTCAAACC
ACAACACAAGGAAGCACACCAACCGACG
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protein sequence of NO04G00140.5

>NO04G00140.5-protein ID=NO04G00140.5-protein|Name=NO04G00140.5|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MPPPTPKDEVKYCPQHVSLQAFPALSSSSSSCCCFSCSSSSCSSSTCHSQ
ANVAANSSTSSSHEASAWKYKVVRGSLYVVGPAIETLAEAGHAYCMDHTT
SAAAAPACDIMPSLIQAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQA
EGEKEAGIEDCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKR
VDENELLSSAPSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYN
STEGVPRSFSSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPP
LLYDPLPLYVYRTSGEGRALAMSVLFLPGEWLRYWQGRVRRGGRKVGGGR
EGEARGEKDASLYSC*
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mRNA from alignment at chr4:62498..64665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00140.5 ID=NO04G00140.5|Name=NO04G00140.5|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at chr4:62498..64665+ (Nannochloropsis oceanica)
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGGTAGGTGAATGGTTGAAGATGAGAAGATGGACGAGAGA
AGGAAAAAAGTATTTAGTAAACTGTGCCCCCACTTACCACCACTTCATTT
TCTTTGTTCATGACTCTTTCCGTCCCTCATTCGCCTTCCCCCGCCTCGTT
CCCTCCCTCCTTCTCGCACTCGACGTACGTCCCACCCTCTTCAATTCCCC
AGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGC
GCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAG
GCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAG
AGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTT
CACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAG
AGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTC
CCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGA
CCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATAC
AACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCAT
GGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGC
TTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCT
CCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGA
GGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTC
GGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGTAGGGGGAGGA
CGGGAAGGGGAGGCAAGGGGAGAGAAGGATGCTTCTCTTTACTCTTGTTA
AGTGGCAGACGACTGTAGGGTAGGAGCCGGCGAGGGTGGAAGCAGGATGA
AAATATCTTGCAGAGCAACAGTCACAAGCAGGCGGCGTACGAAGAATTTA
GTAAATGCATACACTCTCCCACCCTTTCTCCCCCCTCTCCTTCCCTCTCG
TCCTCCCTCCCTCCTTTCCTTAGGCATATCATCCCTTGCACGTAACCCTG
GGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGCGCGGCGCTGGGGGCG
GGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGAGGACGGCAGAGGTTT
TGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAAGGAGAAGGAGAAGGG
AGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCGGGTTCGAGATTTGGC
GGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAGAGGGAAGAACGGAGG
GCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAGGTGGAAGAGGAGGAG
GAGGAAGTGAGGGAGATCACGGCCACACTCACGGCCTGCAGGCGGATACT
TGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGTGTTGGCAAGGGAAAG
AGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTTGCGACAGGTGGGTCG
TCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTGCCTTTGAGAGCAGCA
GCTGGATCGCTACCAAGGCACCCAGATGGGCGTATATGTAATAAGACTGA
CGAGGAGGGAGAGAGGTAGGCCCTGGAAATTGTGCCTGTTCACATATCAA
GTAGCCATGAGAGATGGAGACCCCTGCCGGCCTTCAAACCACAACACAAG
GAAGCACACCAACCGACG
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Coding sequence (CDS) from alignment at chr4:62498..64665+

>NO04G00140.5 ID=NO04G00140.5|Name=NO04G00140.5|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr4:62498..64665+ (Nannochloropsis oceanica)
ATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACTGCCCGCAGCACGT
ATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCTTCCTCCTGTTGTT
GCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTACTTGTCACTCTCAA
GCCAACGTCGCCGCCAATAGTAGTACTTCATCATCACATGAGGCATCGGC
TTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTCGTGGGCCCTGCAA
TCGAGACCTTAGCCGAGGCAGGACATGCATACTGCATGGACCATACTACC
AGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGTCCCTAATACAAGC
TGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGCGCG
ATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAGGCG
GAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAGAGA
CGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTTCAC
CTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAGAGG
GTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTCCCA
CGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGACCC
AGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATACAAC
AGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCATGGA
CCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGCTTG
CCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCTCCC
CTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGAGGG
GCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTCGGT
ATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGTAGGGGGAGGACGG
GAAGGGGAGGCAAGGGGAGAGAAGGATGCTTCTCTTTACTCTTGTTAA
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Synonyms
Publications