NO04G00040, NO04G00040 (gene) Nannochloropsis oceanica

Overview
NameNO04G00040
Unique NameNO04G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1891
Alignment locationchr4:19500..21390 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:19500..21390 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00040 vs. NCBI_GenBank
Match: EWM28415.1 (hypothetical protein Naga_100088g4 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 3.300e-18
Identity = 189/417 (45.32%), Postives = 213/417 (51.08%), Query Frame = 0 
Query:  113 QQQAQQLAELPALRAEWTRRVQALEAEAGTYRSLYDEARQDSEKNKREFIAVVEDQAHAHETHLRAAREEVDKWQARCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAHEVALNEWMAKLVAATSEKSGLAARLESVAVELDHVKSQLRERRHEAEVAVEEAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGSEIRRLQEEIAHLKEVLEDERVRAIKVENDWKYIVRDLQQRQTLAPVQTLAAVWARPPAAATTVTAAGADTSVANEKAAA------EWEERREDKGGDIGISKMELEKVKLRCMLAIQKAERRAEAYKRKCLELHERWKAGSVV 524
            QQQA++LA+L +LR +W +  + L+AE  T+RSLYD AR ++EK+K EFIAVVEDQA                     XXXXXX X                                                V HE  L EWMAK  A TSE+ GL AR+E +  EL     + R +R E E A EE GR            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                        VR IKVENDWK++VRDL  RQ   P         R P A +     GA+   A E AA         EER+E+                        KAERRA+AYK KCLELHERWK GSVV
Sbjct:   19 QQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARXXXXXXNXXXXXXXXXXXXXXXXXXXVXQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGIKVENDWKFVVRDL-HRQLREPTPP-----ERCPHADSMAPGIGAE---AEEMAATARDQSLRREERQEEDLXXXXXXXXXXXXXXXXXXXXXXKAERRADAYKSKCLELHERWKEGSVV 426
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BLAST of NO04G00040 vs. NCBI_GenBank
Match: XP_005854792.1 (hypothetical protein NGA_2055900, partial [Nannochloropsis gaditana CCMP526] >EKU21568.1 hypothetical protein NGA_2055900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13
Identity = 70/192 (36.46%), Postives = 89/192 (46.35%), Query Frame = 0 
Query:  113 QQQAQQLAELPALRAEWTRRVQALEAEAGTYRSLYDEARQDSEKNKREFIAVVEDQAHAHETHLRAAREEVDKWQARCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAHEVALNEWMAKLVAATSEKSGLAARLESVAVELDHVKSQLRERRHEAEVAVEEAGR 305
            QQQA++LA+L +LR +W +  + L+AE  T+RSLYD AR ++EK+K EFIAVVEDQA +    + A            XXXXXX                                                  V HE  L EWMAK  A TSE+ GL AR+E +  EL     + R +R E E A EE GR
Sbjct:    9 QQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSXXXXINAXXXXXXXXXXXXXXXXXXVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGR 200
The following BLAST results are available for this feature:
BLAST of NO04G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28415.13.300e-1845.32hypothetical protein Naga_100088g4 [Nannochloropsi... [more]
XP_005854792.11.100e-1336.46hypothetical protein NGA_2055900, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR085ncniR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004954NSK004954Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00040.1NO04G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612023gene_10648Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100088g4gene2174Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00040.1NO04G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00040 ID=NO04G00040|Name=NO04G00040|organism=Nannochloropsis oceanica|type=gene|length=1891bp
ATGGTTTTGTCCACATGGCAGCCAAGGCCTGCCTTGTTGTCCTCACGGCG
GCGACTTAATTCTCCCAACACCGCGGACGATCCTTCTCCCTCCTCACCGC
GGTACTCACGGCTTCTGACCCGTGTCACGGAACTGGAGGCAGCGCTCGAG
GCTGCGACGAAGGCTCCACCCATCGAGCAAAGCAGGTTCCAAAGACTAAA
GGAAAAGCATGTCGCCACCAAGGCAGCTCTTGTGGAACTCATGGCCCAAA
AAACAGAGCTCGAACAGCAAGCTGAAGCCACGCTGGCCAAATGGCAGGCA
CACCATGAACAGCAGGTGTACGAGCTGGCCACTTGTCAGgtatgctattt
cttgtgagagttgggtgctgctcgtgctcaggaggaagttcttgtttgcc
tcggtgttttttcttcctctttctagattaagtttctgcctcttcgctct
cgccgtccttctctttccgccgggttagactccatcctcactatcttccc
ccaaagcccaccagtaatccactcactcaacctcatctcataagaatcaa
cttcaaccttatcactaccgtctgctcatcgtttcccccccccattgatc
atgcactccttcaattcctccccgttcgctccatgccaatcatccacagC
AACAAGCCCAGCAATTGGCCGAGCTCCCCGCCCTTCGCGCAGAGTGGACT
CGGAGAGTACAAGCTCTAGAGGCCGAGGCAGGTACATACCGCTCGCTGTA
CGACGAGGCGCGGCAAGACAGTGAGAAAAATAAGCGGGAATTCATTGCAG
TAGTGGAGGATCAGGCTCACGCCCACGAGACACATCTCCGGGCTGCCCGC
GAAGAGGTGGATAAGTGGCAGGCGCGTTGTCGGGCATTAGAGGAGGCGGC
CGCAGAAGCGCGAAGCCGCGATGAGGTACTGCGGCAACAGGAAGGGAAGC
TGGAGGTATGGCAGGCGGCGCTTAGGGAAAGCGAGGCCATGGCCCAGAAG
GCGGAGGAGGGAAGGGCGCGCGCCGAAGCGCGGATTCAGCGTGCTGAGGT
GGCTCACGAGGTTGCGCTCAATGAGTGGATGGCCAAGTTGGTGGCGGCGA
CGAGCGAAAAAAGTGGGCTGGCGGCTCGCCTTGAAAGTGTTGCGGTTGAG
CTGGACCACGTTAAGAGCCAGCTACGGGAGCGACGCCACGAAGCAGAAGT
GGCGGTAGAAGAAGCTGGGCGTTTGCGCGAGGCTTTGCGCACAGCAGAGC
AGGCGGAAGAAGAAACACGACGGCAGTCGGAGCGAGAGAGAGAAGCGGCG
CGGCGTGTCTGGCAGGAGGAGAAGGAGGAGTGGGAAAGTCGAGTGCGGGA
GTTCGAGGCCCGGGCCCTTCAAGCAGAGGCCGAGGCGCGGGAAGCGGCTC
GTGACGCGCTCGCCCACGAGCGTGAAACGATTACGGCTGAGACAAAGGCT
CGGCAGACGACAGGAAGCGAGATAAGGCGGCTGCAGGAGGAGATCGCGCA
CTTGAAGGAGGTGCTAGAGGACGAGCGGGTGAGGGCCATCAAGGTGGAGA
ACGACTGGAAGTACATCGTCAGAGACCTGCAACAACGACAAACACTCGCA
CCGGTGCAAACCTTAGCGGCGGTATGGGCACGACCACCTGCGGCTGCAAC
AACTGTAACGGCAGCGGGTGCAGATACGTCGGTGGCAAATGAGAAAGCAG
CTGCTGAGTGGGAGGAGAGAAGGGAGGACAAAGGCGGGGATATAGGGATA
TCGAAAATGGAGCTTGAAAAAGTGAAATTACGGTGCATGCTGGCGATTCA
AAAGGCAGAGCGCCGGGCGGAGGCCTACAAACGTAAGTGTTTGGAGCTGC
ACGAGCGGTGGAAGGCGGGCAGTGTAGTCGAAGGATTGTAA
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protein sequence of NO04G00040.1

>NO04G00040.1-protein ID=NO04G00040.1-protein|Name=NO04G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVLSTWQPRPALLSSRRRLNSPNTADDPSPSSPRYSRLLTRVTELEAALE
AATKAPPIEQSRFQRLKEKHVATKAALVELMAQKTELEQQAEATLAKWQA
HHEQQVYELATCQQQAQQLAELPALRAEWTRRVQALEAEAGTYRSLYDEA
RQDSEKNKREFIAVVEDQAHAHETHLRAAREEVDKWQARCRALEEAAAEA
RSRDEVLRQQEGKLEVWQAALRESEAMAQKAEEGRARAEARIQRAEVAHE
VALNEWMAKLVAATSEKSGLAARLESVAVELDHVKSQLRERRHEAEVAVE
EAGRLREALRTAEQAEEETRRQSEREREAARRVWQEEKEEWESRVREFEA
RALQAEAEAREAARDALAHERETITAETKARQTTGSEIRRLQEEIAHLKE
VLEDERVRAIKVENDWKYIVRDLQQRQTLAPVQTLAAVWARPPAAATTVT
AAGADTSVANEKAAAEWEERREDKGGDIGISKMELEKVKLRCMLAIQKAE
RRAEAYKRKCLELHERWKAGSVVEGL*
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Synonyms
Publications