NO04G00040.1, NO04G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00040.1
Unique NameNO04G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr4:19500..21390 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:19500..21390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00040.1 vs.
Match: EWM28415.1 (hypothetical protein Naga_100088g4 [Nannochloropsis gaditana])

HSP 1 Score: 307.0 bits (785), Expect = 1.100e-79
Identity = 208/417 (49.88%), Postives = 264/417 (63.31%), Query Frame = 0 
Query:  113 QQQAQQLAELPALRAEWTRRVQALEAEAGTYRSLYDEARQDSEKNKREFIAVVEDQAHAHETHLRAAREEVDKWQARCRALEEAAAEARSRDEVLRQQEGKLEVWQAALRESEAMAQKAEEGRARAEARIQRAEVAHEVALNEWMAKLVAATSEKSGLAARLESVAVELDHVKSQLRERRHEAEVAVEEAGRLREALRTAEQAEEETRRQSEREREAARRVWQEEKEEWESRVREFEARALQAEAEAREAARDALAHERETITAETKARQTTGSEIRRLQEEIAHLKEVLEDERVRAIKVENDWKYIVRDLQQRQTLAPVQTLAAVWARPPAAATTVTAAGADTSVANEKAAA------EWEERREDKGGDIGISKMELEKVKLRCMLAIQKAERRAEAYKRKCLELHERWKAGSVV 524
            QQQA++LA+L +LR +W +  + L+AE  T+RSLYD AR ++EK+K EFIAVVEDQA + +  + AAR E ++ QAR R LEE   + RSR+EV RQ E  L+V  AALR+S+A+ Q  EE R R E + QR  V HE  L EWMAK  A TSE+ GL AR+E +  EL     + R +R E E A EE GRLREAL  +E+A EE RR++ RE E  RR W+EEK EW+ ++   E +  + E E +E  R+ L  +     +E   R   G E RRLQE +A L+E LE+ERVR IKVENDWK++VRDL  RQ   P         R P A +     GA+   A E AA         EER+E+    + + + ELEKVKLR MLAIQKAERRA+AYK KCLELHERWK GSVV
Sbjct:   19 QQQAEELAKLSSLRTQWAQEAEDLKAECETFRSLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELEEEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQREGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVELEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEKIERLERQVQRTETEMKELRRERLVADERLAASEENTRHGVGEEARRLQERVADLEEALEEERVRGIKVENDWKFVVRDL-HRQLREPTPP-----ERCPHADSMAPGIGAE---AEEMAATARDQSLRREERQEEDLRAMTLLREELEKVKLRSMLAIQKAERRADAYKSKCLELHERWKEGSVV 426
The following BLAST results are available for this feature:
BLAST of NO04G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28415.11.100e-7949.88hypothetical protein Naga_100088g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00040NO04G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00040.1NO04G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00040.1.cds1NO04G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00040.1.cds2NO04G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00040.1 ID=NO04G00040.1|Name=NO04G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
ATGGTTTTGTCCACATGGCAGCCAAGGCCTGCCTTGTTGTCCTCACGGCG
GCGACTTAATTCTCCCAACACCGCGGACGATCCTTCTCCCTCCTCACCGC
GGTACTCACGGCTTCTGACCCGTGTCACGGAACTGGAGGCAGCGCTCGAG
GCTGCGACGAAGGCTCCACCCATCGAGCAAAGCAGGTTCCAAAGACTAAA
GGAAAAGCATGTCGCCACCAAGGCAGCTCTTGTGGAACTCATGGCCCAAA
AAACAGAGCTCGAACAGCAAGCTGAAGCCACGCTGGCCAAATGGCAGGCA
CACCATGAACAGCAGGTGTACGAGCTGGCCACTTGTCAGCAACAAGCCCA
GCAATTGGCCGAGCTCCCCGCCCTTCGCGCAGAGTGGACTCGGAGAGTAC
AAGCTCTAGAGGCCGAGGCAGGTACATACCGCTCGCTGTACGACGAGGCG
CGGCAAGACAGTGAGAAAAATAAGCGGGAATTCATTGCAGTAGTGGAGGA
TCAGGCTCACGCCCACGAGACACATCTCCGGGCTGCCCGCGAAGAGGTGG
ATAAGTGGCAGGCGCGTTGTCGGGCATTAGAGGAGGCGGCCGCAGAAGCG
CGAAGCCGCGATGAGGTACTGCGGCAACAGGAAGGGAAGCTGGAGGTATG
GCAGGCGGCGCTTAGGGAAAGCGAGGCCATGGCCCAGAAGGCGGAGGAGG
GAAGGGCGCGCGCCGAAGCGCGGATTCAGCGTGCTGAGGTGGCTCACGAG
GTTGCGCTCAATGAGTGGATGGCCAAGTTGGTGGCGGCGACGAGCGAAAA
AAGTGGGCTGGCGGCTCGCCTTGAAAGTGTTGCGGTTGAGCTGGACCACG
TTAAGAGCCAGCTACGGGAGCGACGCCACGAAGCAGAAGTGGCGGTAGAA
GAAGCTGGGCGTTTGCGCGAGGCTTTGCGCACAGCAGAGCAGGCGGAAGA
AGAAACACGACGGCAGTCGGAGCGAGAGAGAGAAGCGGCGCGGCGTGTCT
GGCAGGAGGAGAAGGAGGAGTGGGAAAGTCGAGTGCGGGAGTTCGAGGCC
CGGGCCCTTCAAGCAGAGGCCGAGGCGCGGGAAGCGGCTCGTGACGCGCT
CGCCCACGAGCGTGAAACGATTACGGCTGAGACAAAGGCTCGGCAGACGA
CAGGAAGCGAGATAAGGCGGCTGCAGGAGGAGATCGCGCACTTGAAGGAG
GTGCTAGAGGACGAGCGGGTGAGGGCCATCAAGGTGGAGAACGACTGGAA
GTACATCGTCAGAGACCTGCAACAACGACAAACACTCGCACCGGTGCAAA
CCTTAGCGGCGGTATGGGCACGACCACCTGCGGCTGCAACAACTGTAACG
GCAGCGGGTGCAGATACGTCGGTGGCAAATGAGAAAGCAGCTGCTGAGTG
GGAGGAGAGAAGGGAGGACAAAGGCGGGGATATAGGGATATCGAAAATGG
AGCTTGAAAAAGTGAAATTACGGTGCATGCTGGCGATTCAAAAGGCAGAG
CGCCGGGCGGAGGCCTACAAACGTAAGTGTTTGGAGCTGCACGAGCGGTG
GAAGGCGGGCAGTGTAGTCGAAGGATTGTAA
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protein sequence of NO04G00040.1

>NO04G00040.1-protein ID=NO04G00040.1-protein|Name=NO04G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVLSTWQPRPALLSSRRRLNSPNTADDPSPSSPRYSRLLTRVTELEAALE
AATKAPPIEQSRFQRLKEKHVATKAALVELMAQKTELEQQAEATLAKWQA
HHEQQVYELATCQQQAQQLAELPALRAEWTRRVQALEAEAGTYRSLYDEA
RQDSEKNKREFIAVVEDQAHAHETHLRAAREEVDKWQARCRALEEAAAEA
RSRDEVLRQQEGKLEVWQAALRESEAMAQKAEEGRARAEARIQRAEVAHE
VALNEWMAKLVAATSEKSGLAARLESVAVELDHVKSQLRERRHEAEVAVE
EAGRLREALRTAEQAEEETRRQSEREREAARRVWQEEKEEWESRVREFEA
RALQAEAEAREAARDALAHERETITAETKARQTTGSEIRRLQEEIAHLKE
VLEDERVRAIKVENDWKYIVRDLQQRQTLAPVQTLAAVWARPPAAATTVT
AAGADTSVANEKAAAEWEERREDKGGDIGISKMELEKVKLRCMLAIQKAE
RRAEAYKRKCLELHERWKAGSVVEGL*
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mRNA from alignment at chr4:19500..21390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00040.1 ID=NO04G00040.1|Name=NO04G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr4:19500..21390- (Nannochloropsis oceanica)
ATGGTTTTGTCCACATGGCAGCCAAGGCCTGCCTTGTTGTCCTCACGGCG
GCGACTTAATTCTCCCAACACCGCGGACGATCCTTCTCCCTCCTCACCGC
GGTACTCACGGCTTCTGACCCGTGTCACGGAACTGGAGGCAGCGCTCGAG
GCTGCGACGAAGGCTCCACCCATCGAGCAAAGCAGGTTCCAAAGACTAAA
GGAAAAGCATGTCGCCACCAAGGCAGCTCTTGTGGAACTCATGGCCCAAA
AAACAGAGCTCGAACAGCAAGCTGAAGCCACGCTGGCCAAATGGCAGGCA
CACCATGAACAGCAGGTGTACGAGCTGGCCACTTGTCAGGTATGCTATTT
CTTGTGAGAGTTGGGTGCTGCTCGTGCTCAGGAGGAAGTTCTTGTTTGCC
TCGGTGTTTTTTCTTCCTCTTTCTAGATTAAGTTTCTGCCTCTTCGCTCT
CGCCGTCCTTCTCTTTCCGCCGGGTTAGACTCCATCCTCACTATCTTCCC
CCAAAGCCCACCAGTAATCCACTCACTCAACCTCATCTCATAAGAATCAA
CTTCAACCTTATCACTACCGTCTGCTCATCGTTTCCCCCCCCCATTGATC
ATGCACTCCTTCAATTCCTCCCCGTTCGCTCCATGCCAATCATCCACAGC
AACAAGCCCAGCAATTGGCCGAGCTCCCCGCCCTTCGCGCAGAGTGGACT
CGGAGAGTACAAGCTCTAGAGGCCGAGGCAGGTACATACCGCTCGCTGTA
CGACGAGGCGCGGCAAGACAGTGAGAAAAATAAGCGGGAATTCATTGCAG
TAGTGGAGGATCAGGCTCACGCCCACGAGACACATCTCCGGGCTGCCCGC
GAAGAGGTGGATAAGTGGCAGGCGCGTTGTCGGGCATTAGAGGAGGCGGC
CGCAGAAGCGCGAAGCCGCGATGAGGTACTGCGGCAACAGGAAGGGAAGC
TGGAGGTATGGCAGGCGGCGCTTAGGGAAAGCGAGGCCATGGCCCAGAAG
GCGGAGGAGGGAAGGGCGCGCGCCGAAGCGCGGATTCAGCGTGCTGAGGT
GGCTCACGAGGTTGCGCTCAATGAGTGGATGGCCAAGTTGGTGGCGGCGA
CGAGCGAAAAAAGTGGGCTGGCGGCTCGCCTTGAAAGTGTTGCGGTTGAG
CTGGACCACGTTAAGAGCCAGCTACGGGAGCGACGCCACGAAGCAGAAGT
GGCGGTAGAAGAAGCTGGGCGTTTGCGCGAGGCTTTGCGCACAGCAGAGC
AGGCGGAAGAAGAAACACGACGGCAGTCGGAGCGAGAGAGAGAAGCGGCG
CGGCGTGTCTGGCAGGAGGAGAAGGAGGAGTGGGAAAGTCGAGTGCGGGA
GTTCGAGGCCCGGGCCCTTCAAGCAGAGGCCGAGGCGCGGGAAGCGGCTC
GTGACGCGCTCGCCCACGAGCGTGAAACGATTACGGCTGAGACAAAGGCT
CGGCAGACGACAGGAAGCGAGATAAGGCGGCTGCAGGAGGAGATCGCGCA
CTTGAAGGAGGTGCTAGAGGACGAGCGGGTGAGGGCCATCAAGGTGGAGA
ACGACTGGAAGTACATCGTCAGAGACCTGCAACAACGACAAACACTCGCA
CCGGTGCAAACCTTAGCGGCGGTATGGGCACGACCACCTGCGGCTGCAAC
AACTGTAACGGCAGCGGGTGCAGATACGTCGGTGGCAAATGAGAAAGCAG
CTGCTGAGTGGGAGGAGAGAAGGGAGGACAAAGGCGGGGATATAGGGATA
TCGAAAATGGAGCTTGAAAAAGTGAAATTACGGTGCATGCTGGCGATTCA
AAAGGCAGAGCGCCGGGCGGAGGCCTACAAACGTAAGTGTTTGGAGCTGC
ACGAGCGGTGGAAGGCGGGCAGTGTAGTCGAAGGATTGTAA
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Coding sequence (CDS) from alignment at chr4:19500..21390-

>NO04G00040.1 ID=NO04G00040.1|Name=NO04G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr4:19500..21390- (Nannochloropsis oceanica)
ATGGTTTTGTCCACATGGCAGCCAAGGCCTGCCTTGTTGTCCTCACGGCG
GCGACTTAATTCTCCCAACACCGCGGACGATCCTTCTCCCTCCTCACCGC
GGTACTCACGGCTTCTGACCCGTGTCACGGAACTGGAGGCAGCGCTCGAG
GCTGCGACGAAGGCTCCACCCATCGAGCAAAGCAGGTTCCAAAGACTAAA
GGAAAAGCATGTCGCCACCAAGGCAGCTCTTGTGGAACTCATGGCCCAAA
AAACAGAGCTCGAACAGCAAGCTGAAGCCACGCTGGCCAAATGGCAGGCA
CACCATGAACAGCAGGTGTACGAGCTGGCCACTTGTCAGCAACAAGCCCA
GCAATTGGCCGAGCTCCCCGCCCTTCGCGCAGAGTGGACTCGGAGAGTAC
AAGCTCTAGAGGCCGAGGCAGGTACATACCGCTCGCTGTACGACGAGGCG
CGGCAAGACAGTGAGAAAAATAAGCGGGAATTCATTGCAGTAGTGGAGGA
TCAGGCTCACGCCCACGAGACACATCTCCGGGCTGCCCGCGAAGAGGTGG
ATAAGTGGCAGGCGCGTTGTCGGGCATTAGAGGAGGCGGCCGCAGAAGCG
CGAAGCCGCGATGAGGTACTGCGGCAACAGGAAGGGAAGCTGGAGGTATG
GCAGGCGGCGCTTAGGGAAAGCGAGGCCATGGCCCAGAAGGCGGAGGAGG
GAAGGGCGCGCGCCGAAGCGCGGATTCAGCGTGCTGAGGTGGCTCACGAG
GTTGCGCTCAATGAGTGGATGGCCAAGTTGGTGGCGGCGACGAGCGAAAA
AAGTGGGCTGGCGGCTCGCCTTGAAAGTGTTGCGGTTGAGCTGGACCACG
TTAAGAGCCAGCTACGGGAGCGACGCCACGAAGCAGAAGTGGCGGTAGAA
GAAGCTGGGCGTTTGCGCGAGGCTTTGCGCACAGCAGAGCAGGCGGAAGA
AGAAACACGACGGCAGTCGGAGCGAGAGAGAGAAGCGGCGCGGCGTGTCT
GGCAGGAGGAGAAGGAGGAGTGGGAAAGTCGAGTGCGGGAGTTCGAGGCC
CGGGCCCTTCAAGCAGAGGCCGAGGCGCGGGAAGCGGCTCGTGACGCGCT
CGCCCACGAGCGTGAAACGATTACGGCTGAGACAAAGGCTCGGCAGACGA
CAGGAAGCGAGATAAGGCGGCTGCAGGAGGAGATCGCGCACTTGAAGGAG
GTGCTAGAGGACGAGCGGGTGAGGGCCATCAAGGTGGAGAACGACTGGAA
GTACATCGTCAGAGACCTGCAACAACGACAAACACTCGCACCGGTGCAAA
CCTTAGCGGCGGTATGGGCACGACCACCTGCGGCTGCAACAACTGTAACG
GCAGCGGGTGCAGATACGTCGGTGGCAAATGAGAAAGCAGCTGCTGAGTG
GGAGGAGAGAAGGGAGGACAAAGGCGGGGATATAGGGATATCGAAAATGG
AGCTTGAAAAAGTGAAATTACGGTGCATGCTGGCGATTCAAAAGGCAGAG
CGCCGGGCGGAGGCCTACAAACGTAAGTGTTTGGAGCTGCACGAGCGGTG
GAAGGCGGGCAGTGTAGTCGAAGGATTGTAA
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Synonyms
Publications