NO03G05750, NO03G05750 (gene) Nannochloropsis oceanica

Overview
NameNO03G05750
Unique NameNO03G05750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2103
Alignment locationchr3:1649649..1651751 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1649649..1651751 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G05750 vs. NCBI_GenBank
Match: EWM30051.1 (hypothetical protein Naga_100225g5 [Nannochloropsis gaditana])

HSP 1 Score: 132.1 bits (331), Expect = 2.400e-27
Identity = 78/165 (47.27%), Postives = 105/165 (63.64%), Query Frame = 0 
Query:    1 MENDECETHQPFQYRSSGGS----FRGGRSEADGGMLEDDEELQRLERHLEGSMEGVEEAGKSFLVRARQ----GLASLKRSLSGSGQEEADERTGGSKMELPIGCKGYGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVTSYEEMRQ 158
            ME DECET Q + + +   S     + G S   GGM+E+DEEL RLE+H+EG  +  +++  SF  +ARQ    GLA+LKRS+SGS ++E +ER    + E+  G +GYG  P SELEQDM   MQ A  +L + T     +   LHAPELYHPE+VTSYEE+R+
Sbjct:    7 MEADECETRQRYHHAAMPASATFGSQLGLSAEKGGMIEEDEELHRLEQHMEGIGKNSKDSDTSFFQKARQTTLEGLAALKRSISGSREKEREEREEMCRKEVVFGERGYGTCPSSELEQDMHRMMQAAVDVLKEPTESPTRNTTRLHAPELYHPESVTSYEELRK 171
The following BLAST results are available for this feature:
BLAST of NO03G05750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30051.12.400e-2747.27hypothetical protein Naga_100225g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005290NSK005290Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05750.1NO03G05750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573483gene_1788Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100225g5gene598Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05750.1NO03G05750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05750 ID=NO03G05750|Name=NO03G05750|organism=Nannochloropsis oceanica|type=gene|length=2103bp
ACGATTATGCCTGTTCCTGTCTCTTTCCTCTCCTCGATACCATCATTCTT
TGTTTTTCACTCATGCTTAGCTCTATTAGGGCCACTCCTCCCCAAACGCC
GTGCGGGAGTCCAGTTTGTCCCAGTCCAGCTCCACCCACAGAGAGCAGCC
TACAGTAGCACCTTGGAATTTTCTTGATATCCTGTTTATCCAGGGCCGTC
TCATCCCTCGCCATCAGTTTCATCTTACCCTGACCAGGCTCCCACAGGTA
TCGCATGCTCCAAGCAAGTCTAAATGAACTTTATCCTGTGCCAAGAGGTG
TTGGGTAGCGAGCATCCAACGAAAATGGAACTCCCGACAAATTTCTAGTC
ATGTTCGTTCTTGATTGTAAGATGATTTATGGCGATAATCAGCGTGGAGT
GAGGGCAGGTGGTGGTGGTGGTGGCAGTAACAGTATCATCAGAGGTGTGT
GAAGCCAAGGAACTTGCACGAAGTTTGGCGGAAAGGGGAACTGCGATAGC
TAGCGTGCAGGGTTACGGTGTCTTTTTCGGGATAAGGAAACGGTAGGAGC
GGGAAGGTTGTGAATTTTGAGTCGAGTGTGTATGTGATTACATTCATGTA
TAAGTTTATGTAGCACGCGGCTTGAAAATGCGGAAACAGAAGAAGGAAAA
TTGTAGTTGCTTCCTCCCCCGGGTTTTTCCAATTCAATAAGGAGGGCAAT
GAGCTGTTCGCCCTGCGGTAGGGGGACTTTACGTAGTAGACCCTGTGGAC
AGGCGGTTTTGGGCTGCCAGAGAGTTCGATGTGCGATTTTTGACAATACC
CTGGTATGCCACTCAAGCCGTATAGCACAAGTGCCTGCACGAAGAGCACG
GCAACCTGCCGCGAATGTCGGATCTTCAAGTCAGAAGTAACGTGGCGCGT
TTAACAACAAGAGAAACAGAACAGAGCCAACAGAACATGTCATAAAGCCT
CAACACCGACCGCTTCTTTTTTACTGTAACACACATCTAAATCTAATAAA
TTTTCCTCTTTCAAACGCAATAAAAATACAGAGTAATTTCGATGGAGAAT
GACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTCAGGTGGCTC
CTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGGAGGACGATG
AAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATGGAGGGCGTA
GAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGGGCTAGCCTC
ATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAGACGAGCGGA
CGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGTTATGGCGCA
GATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATATGCAGGAGGC
GGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCGATATTCATC
ATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACGAGCTACGAA
GAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGACGCGCGCAA
GATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGGGGGGCGTGG
GATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGGCAGCGCAAC
AATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCGCATGGGAGT
GAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGAGAGAAGATG
AAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAGTAGAGAGAG
AAAGAGAAATATGGAGTGAAGCGATTGACGTGACAGAGTGGGAAGCAGAA
GAGCAGGTGCTGTGTGTATGTGTGATTTGGGTGCGAGCTGCATGTGGGAG
TGGAGGAGAGGCAGGACATTCTTGGCGCGGGTAGTAGGGTGGTGAAACAA
AAGGTGAGTAGAACTGAGGGAGTGCAAGGCGCGCTATTGTGTATCGTGTT
CATACATGCATGCCGGGGCTTGCAGGGATCGGGATACATGGCCAGCGAGT
TCGGAGACATTTCACTTCACGTTGTCCACGAAAAGAAAAAGAGGCGACAG
TAT
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protein sequence of NO03G05750.1

>NO03G05750.1-protein ID=NO03G05750.1-protein|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MENDECETHQPFQYRSSGGSFRGGRSEADGGMLEDDEELQRLERHLEGSM
EGVEEAGKSFLVRARQGLASLKRSLSGSGQEEADERTGGSKMELPIGCKG
YGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVT
SYEEMRQWPEGSTRALDARKINKDTIEVTQVTKGGVGSCSDGEGEMKQGR
QRNNNSTDEDAVAAKERMGVKREEIDKRTEEEKREDEEEMLEMLQMFTPE
*
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Synonyms
Publications