NO03G05750.1, NO03G05750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05750.1
Unique NameNO03G05750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2103
Alignment locationchr3:1649649..1651751 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1649649..1651751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05750.1 vs.
Match: EWM30051.1 (hypothetical protein Naga_100225g5 [Nannochloropsis gaditana])

HSP 1 Score: 131.3 bits (329), Expect = 4.100e-27
Identity = 94/256 (36.72%), Postives = 137/256 (53.52%), Query Frame = 0
Query:    1 MENDECETHQPFQYRSSGGSFRGGR----SEADGGMLEDDEELQRLERHLEGSMEGVEEAGKSFLVRARQ----GLASLKRSLSGSGQEEADERTGGSKMELPIGCKGYGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVTSYEEMRQWPEGSTRALDARKINKDTIEVTQVTKGGVGSCSDGEGEMKQGRQRNN--NSTDEDAVAAKERMGVKREEIDKRTEEEKREDEEEMLEMLQM 247
            ME DECET Q + + +   S   G     S   GGM+E+DEEL RLE+H+EG  +  +++  SF  +ARQ    GLA+LKRS+SGS ++E +ER    + E+  G +GYG  P SELEQDM   MQ A  +L + T     +   LHAPELYHPE+VTSYEE+R+             I+  T +V        G  +  EG   + ++  +  +S    A    E+MG   +      +  + + E++ LEM+Q+
Sbjct:    7 MEADECETRQRYHHAAMPASATFGSQLGLSAEKGGMIEEDEELHRLEQHMEGIGKNSKDSDTSFFQKARQTTLEGLAALKRSISGSREKEREEREEMCRKEVVFGERGYGTCPSSELEQDMHRMMQAAVDVLKEPTESPTRNTTRLHAPELYHPESVTSYEELRKRNATGKEMEGESDIDATTQQVVSKMFDASGEETKPEGLEVEEKENQSVIDSLGSKATGIVEKMGAMTQSTQDIKDNNEEDQEDDALEMMQI 262          
The following BLAST results are available for this feature:
BLAST of NO03G05750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30051.14.100e-2736.72hypothetical protein Naga_100225g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05750NO03G05750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05750.1NO03G05750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05750.1.cds1NO03G05750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05750.1 ID=NO03G05750.1|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp
ACGATTATGCCTGTTCCTGTCTCTTTCCTCTCCTCGATACCATCATTCTT
TGTTTTTCACTCATGCTTAGCTCTATTAGGGCCACTCCTCCCCAAACGCC
GTGCGGGAGTCCAGTTTGTCCCAGTCCAGCTCCACCCACAGAGAGCAGCC
TACAGTAGCACCTTGGAATTTTCTTGATATCCTGTTTATCCAGGGCCGTC
TCATCCCTCGCCATCAGTTTCATCTTACCCTGACCAGGCTCCCACAGGTA
TCGCATGCTCCAAGCAAGTCTAAATGAACTTTATCCTGTGCCAAGAGGTG
TTGGGTAGCGAGCATCCAACGAAAATGGAACTCCCGACAAATTTCTAGTC
ATGTTCGTTCTTGATTGTAAGATGATTTATGGCGATAATCAGCGTGGAGT
GAGGGCAGGTGGTGGTGGTGGTGGCAGTAACAGTATCATCAGAGGTGTGT
GAAGCCAAGGAACTTGCACGAAGTTTGGCGGAAAGGGGAACTGCGATAGC
TAGCGTGCAGGGTTACGGTGTCTTTTTCGGGATAAGGAAACGGTAGGAGC
GGGAAGGTTGTGAATTTTGAGTCGAGTGTGTATGTGATTACATTCATGTA
TAAGTTTATGTAGCACGCGGCTTGAAAATGCGGAAACAGAAGAAGGAAAA
TTGTAGTTGCTTCCTCCCCCGGGTTTTTCCAATTCAATAAGGAGGGCAAT
GAGCTGTTCGCCCTGCGGTAGGGGGACTTTACGTAGTAGACCCTGTGGAC
AGGCGGTTTTGGGCTGCCAGAGAGTTCGATGTGCGATTTTTGACAATACC
CTGGTATGCCACTCAAGCCGTATAGCACAAGTGCCTGCACGAAGAGCACG
GCAACCTGCCGCGAATGTCGGATCTTCAAGTCAGAAGTAACGTGGCGCGT
TTAACAACAAGAGAAACAGAACAGAGCCAACAGAACATGTCATAAAGCCT
CAACACCGACCGCTTCTTTTTTACTGTAACACACATCTAAATCTAATAAA
TTTTCCTCTTTCAAACGCAATAAAAATACAGAGTAATTTCGATGGAGAAT
GACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTCAGGTGGCTC
CTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGGAGGACGATG
AAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATGGAGGGCGTA
GAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGGGCTAGCCTC
ATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAGACGAGCGGA
CGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGTTATGGCGCA
GATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATATGCAGGAGGC
GGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCGATATTCATC
ATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACGAGCTACGAA
GAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGACGCGCGCAA
GATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGGGGGGCGTGG
GATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGGCAGCGCAAC
AATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCGCATGGGAGT
GAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGAGAGAAGATG
AAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAGTAGAGAGAG
AAAGAGAAATATGGAGTGAAGCGATTGACGTGACAGAGTGGGAAGCAGAA
GAGCAGGTGCTGTGTGTATGTGTGATTTGGGTGCGAGCTGCATGTGGGAG
TGGAGGAGAGGCAGGACATTCTTGGCGCGGGTAGTAGGGTGGTGAAACAA
AAGGTGAGTAGAACTGAGGGAGTGCAAGGCGCGCTATTGTGTATCGTGTT
CATACATGCATGCCGGGGCTTGCAGGGATCGGGATACATGGCCAGCGAGT
TCGGAGACATTTCACTTCACGTTGTCCACGAAAAGAAAAAGAGGCGACAG
TAT
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protein sequence of NO03G05750.1

>NO03G05750.1-protein ID=NO03G05750.1-protein|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MENDECETHQPFQYRSSGGSFRGGRSEADGGMLEDDEELQRLERHLEGSM
EGVEEAGKSFLVRARQGLASLKRSLSGSGQEEADERTGGSKMELPIGCKG
YGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVT
SYEEMRQWPEGSTRALDARKINKDTIEVTQVTKGGVGSCSDGEGEMKQGR
QRNNNSTDEDAVAAKERMGVKREEIDKRTEEEKREDEEEMLEMLQMFTPE
*
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mRNA from alignment at chr3:1649649..1651751+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05750.1 ID=NO03G05750.1|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr3:1649649..1651751+ (Nannochloropsis oceanica)
ACGATTATGCCTGTTCCTGTCTCTTTCCTCTCCTCGATACCATCATTCTT TGTTTTTCACTCATGCTTAGCTCTATTAGGGCCACTCCTCCCCAAACGCC GTGCGGGAGTCCAGTTTGTCCCAGTCCAGCTCCACCCACAGAGAGCAGCC TACAGTAGCACCTTGGAATTTTCTTGATATCCTGTTTATCCAGGGCCGTC TCATCCCTCGCCATCAGTTTCATCTTACCCTGACCAGGCTCCCACAGGTA TCGCATGCTCCAAGCAAGTCTAAATGAACTTTATCCTGTGCCAAGAGGTG TTGGGTAGCGAGCATCCAACGAAAATGGAACTCCCGACAAATTTCTAGTC ATGTTCGTTCTTGATTGTAAGATGATTTATGGCGATAATCAGCGTGGAGT GAGGGCAGGTGGTGGTGGTGGTGGCAGTAACAGTATCATCAGAGGTGTGT GAAGCCAAGGAACTTGCACGAAGTTTGGCGGAAAGGGGAACTGCGATAGC TAGCGTGCAGGGTTACGGTGTCTTTTTCGGGATAAGGAAACGGTAGGAGC GGGAAGGTTGTGAATTTTGAGTCGAGTGTGTATGTGATTACATTCATGTA TAAGTTTATGTAGCACGCGGCTTGAAAATGCGGAAACAGAAGAAGGAAAA TTGTAGTTGCTTCCTCCCCCGGGTTTTTCCAATTCAATAAGGAGGGCAAT GAGCTGTTCGCCCTGCGGTAGGGGGACTTTACGTAGTAGACCCTGTGGAC AGGCGGTTTTGGGCTGCCAGAGAGTTCGATGTGCGATTTTTGACAATACC CTGGTATGCCACTCAAGCCGTATAGCACAAGTGCCTGCACGAAGAGCACG GCAACCTGCCGCGAATGTCGGATCTTCAAGTCAGAAGTAACGTGGCGCGT TTAACAACAAGAGAAACAGAACAGAGCCAACAGAACATGTCATAAAGCCT CAACACCGACCGCTTCTTTTTTACTGTAACACACATCTAAATCTAATAAA TTTTCCTCTTTCAAACGCAATAAAAATACAGAGTAATTTCGATGGAGAAT GACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTCAGGTGGCTC CTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGGAGGACGATG AAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATGGAGGGCGTA GAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGGGCTAGCCTC ATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAGACGAGCGGA CGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGTTATGGCGCA GATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATATGCAGGAGGC GGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCGATATTCATC ATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACGAGCTACGAA GAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGACGCGCGCAA GATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGGGGGGCGTGG GATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGGCAGCGCAAC AATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCGCATGGGAGT GAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGAGAGAAGATG AAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAGTAGAGAGAG AAAGAGAAATATGGAGTGAAGCGATTGACGTGACAGAGTGGGAAGCAGAA GAGCAGGTGCTGTGTGTATGTGTGATTTGGGTGCGAGCTGCATGTGGGAG TGGAGGAGAGGCAGGACATTCTTGGCGCGGGTAGTAGGGTGGTGAAACAA AAGGTGAGTAGAACTGAGGGAGTGCAAGGCGCGCTATTGTGTATCGTGTT CATACATGCATGCCGGGGCTTGCAGGGATCGGGATACATGGCCAGCGAGT TCGGAGACATTTCACTTCACGTTGTCCACGAAAAGAAAAAGAGGCGACAG TAT
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Coding sequence (CDS) from alignment at chr3:1649649..1651751+

>NO03G05750.1 ID=NO03G05750.1|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr3:1649649..1651751+ (Nannochloropsis oceanica)
ATGGAGAATGACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTC
AGGTGGCTCCTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGG
AGGACGATGAAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATG
GAGGGCGTAGAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGG
GCTAGCCTCATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAG
ACGAGCGGACGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGT
TATGGCGCAGATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATAT
GCAGGAGGCGGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCG
ATATTCATCATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACG
AGCTACGAAGAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGA
CGCGCGCAAGATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGG
GGGGCGTGGGATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGG
CAGCGCAACAATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCG
CATGGGAGTGAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGA
GAGAAGATGAAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAG
TAG
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Synonyms
Publications