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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1649649..1651751 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05750.1 vs.
Match: EWM30051.1 (hypothetical protein Naga_100225g5 [Nannochloropsis gaditana]) HSP 1 Score: 131.3 bits (329), Expect = 4.100e-27 Identity = 94/256 (36.72%), Postives = 137/256 (53.52%), Query Frame = 0
Query: 1 MENDECETHQPFQYRSSGGSFRGGR----SEADGGMLEDDEELQRLERHLEGSMEGVEEAGKSFLVRARQ----GLASLKRSLSGSGQEEADERTGGSKMELPIGCKGYGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVTSYEEMRQWPEGSTRALDARKINKDTIEVTQVTKGGVGSCSDGEGEMKQGRQRNN--NSTDEDAVAAKERMGVKREEIDKRTEEEKREDEEEMLEMLQM 247
ME DECET Q + + + S G S GGM+E+DEEL RLE+H+EG + +++ SF +ARQ GLA+LKRS+SGS ++E +ER + E+ G +GYG P SELEQDM MQ A +L + T + LHAPELYHPE+VTSYEE+R+ I+ T +V G + EG + ++ + +S A E+MG + + + + E++ LEM+Q+
Sbjct: 7 MEADECETRQRYHHAAMPASATFGSQLGLSAEKGGMIEEDEELHRLEQHMEGIGKNSKDSDTSFFQKARQTTLEGLAALKRSISGSREKEREEREEMCRKEVVFGERGYGTCPSSELEQDMHRMMQAAVDVLKEPTESPTRNTTRLHAPELYHPESVTSYEELRKRNATGKEMEGESDIDATTQQVVSKMFDASGEETKPEGLEVEEKENQSVIDSLGSKATGIVEKMGAMTQSTQDIKDNNEEDQEDDALEMMQI 262
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05750.1 ID=NO03G05750.1|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp ACGATTATGCCTGTTCCTGTCTCTTTCCTCTCCTCGATACCATCATTCTT TGTTTTTCACTCATGCTTAGCTCTATTAGGGCCACTCCTCCCCAAACGCC GTGCGGGAGTCCAGTTTGTCCCAGTCCAGCTCCACCCACAGAGAGCAGCC TACAGTAGCACCTTGGAATTTTCTTGATATCCTGTTTATCCAGGGCCGTC TCATCCCTCGCCATCAGTTTCATCTTACCCTGACCAGGCTCCCACAGGTA TCGCATGCTCCAAGCAAGTCTAAATGAACTTTATCCTGTGCCAAGAGGTG TTGGGTAGCGAGCATCCAACGAAAATGGAACTCCCGACAAATTTCTAGTC ATGTTCGTTCTTGATTGTAAGATGATTTATGGCGATAATCAGCGTGGAGT GAGGGCAGGTGGTGGTGGTGGTGGCAGTAACAGTATCATCAGAGGTGTGT GAAGCCAAGGAACTTGCACGAAGTTTGGCGGAAAGGGGAACTGCGATAGC TAGCGTGCAGGGTTACGGTGTCTTTTTCGGGATAAGGAAACGGTAGGAGC GGGAAGGTTGTGAATTTTGAGTCGAGTGTGTATGTGATTACATTCATGTA TAAGTTTATGTAGCACGCGGCTTGAAAATGCGGAAACAGAAGAAGGAAAA TTGTAGTTGCTTCCTCCCCCGGGTTTTTCCAATTCAATAAGGAGGGCAAT GAGCTGTTCGCCCTGCGGTAGGGGGACTTTACGTAGTAGACCCTGTGGAC AGGCGGTTTTGGGCTGCCAGAGAGTTCGATGTGCGATTTTTGACAATACC CTGGTATGCCACTCAAGCCGTATAGCACAAGTGCCTGCACGAAGAGCACG GCAACCTGCCGCGAATGTCGGATCTTCAAGTCAGAAGTAACGTGGCGCGT TTAACAACAAGAGAAACAGAACAGAGCCAACAGAACATGTCATAAAGCCT CAACACCGACCGCTTCTTTTTTACTGTAACACACATCTAAATCTAATAAA TTTTCCTCTTTCAAACGCAATAAAAATACAGAGTAATTTCGATGGAGAAT GACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTCAGGTGGCTC CTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGGAGGACGATG AAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATGGAGGGCGTA GAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGGGCTAGCCTC ATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAGACGAGCGGA CGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGTTATGGCGCA GATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATATGCAGGAGGC GGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCGATATTCATC ATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACGAGCTACGAA GAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGACGCGCGCAA GATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGGGGGGCGTGG GATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGGCAGCGCAAC AATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCGCATGGGAGT GAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGAGAGAAGATG AAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAGTAGAGAGAG AAAGAGAAATATGGAGTGAAGCGATTGACGTGACAGAGTGGGAAGCAGAA GAGCAGGTGCTGTGTGTATGTGTGATTTGGGTGCGAGCTGCATGTGGGAG TGGAGGAGAGGCAGGACATTCTTGGCGCGGGTAGTAGGGTGGTGAAACAA AAGGTGAGTAGAACTGAGGGAGTGCAAGGCGCGCTATTGTGTATCGTGTT CATACATGCATGCCGGGGCTTGCAGGGATCGGGATACATGGCCAGCGAGT TCGGAGACATTTCACTTCACGTTGTCCACGAAAAGAAAAAGAGGCGACAG TAT back to topprotein sequence of NO03G05750.1 >NO03G05750.1-protein ID=NO03G05750.1-protein|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp MENDECETHQPFQYRSSGGSFRGGRSEADGGMLEDDEELQRLERHLEGSM EGVEEAGKSFLVRARQGLASLKRSLSGSGQEEADERTGGSKMELPIGCKG YGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVT SYEEMRQWPEGSTRALDARKINKDTIEVTQVTKGGVGSCSDGEGEMKQGR QRNNNSTDEDAVAAKERMGVKREEIDKRTEEEKREDEEEMLEMLQMFTPE * back to topmRNA from alignment at chr3:1649649..1651751+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05750.1 ID=NO03G05750.1|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr3:1649649..1651751+ (Nannochloropsis oceanica) ACGATTATGCCTGTTCCTGTCTCTTTCCTCTCCTCGATACCATCATTCTT
TGTTTTTCACTCATGCTTAGCTCTATTAGGGCCACTCCTCCCCAAACGCC
GTGCGGGAGTCCAGTTTGTCCCAGTCCAGCTCCACCCACAGAGAGCAGCC
TACAGTAGCACCTTGGAATTTTCTTGATATCCTGTTTATCCAGGGCCGTC
TCATCCCTCGCCATCAGTTTCATCTTACCCTGACCAGGCTCCCACAGGTA
TCGCATGCTCCAAGCAAGTCTAAATGAACTTTATCCTGTGCCAAGAGGTG
TTGGGTAGCGAGCATCCAACGAAAATGGAACTCCCGACAAATTTCTAGTC
ATGTTCGTTCTTGATTGTAAGATGATTTATGGCGATAATCAGCGTGGAGT
GAGGGCAGGTGGTGGTGGTGGTGGCAGTAACAGTATCATCAGAGGTGTGT
GAAGCCAAGGAACTTGCACGAAGTTTGGCGGAAAGGGGAACTGCGATAGC
TAGCGTGCAGGGTTACGGTGTCTTTTTCGGGATAAGGAAACGGTAGGAGC
GGGAAGGTTGTGAATTTTGAGTCGAGTGTGTATGTGATTACATTCATGTA
TAAGTTTATGTAGCACGCGGCTTGAAAATGCGGAAACAGAAGAAGGAAAA
TTGTAGTTGCTTCCTCCCCCGGGTTTTTCCAATTCAATAAGGAGGGCAAT
GAGCTGTTCGCCCTGCGGTAGGGGGACTTTACGTAGTAGACCCTGTGGAC
AGGCGGTTTTGGGCTGCCAGAGAGTTCGATGTGCGATTTTTGACAATACC
CTGGTATGCCACTCAAGCCGTATAGCACAAGTGCCTGCACGAAGAGCACG
GCAACCTGCCGCGAATGTCGGATCTTCAAGTCAGAAGTAACGTGGCGCGT
TTAACAACAAGAGAAACAGAACAGAGCCAACAGAACATGTCATAAAGCCT
CAACACCGACCGCTTCTTTTTTACTGTAACACACATCTAAATCTAATAAA
TTTTCCTCTTTCAAACGCAATAAAAATACAGAGTAATTTCGATGGAGAAT
GACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTCAGGTGGCTC
CTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGGAGGACGATG
AAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATGGAGGGCGTA
GAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGGGCTAGCCTC
ATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAGACGAGCGGA
CGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGTTATGGCGCA
GATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATATGCAGGAGGC
GGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCGATATTCATC
ATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACGAGCTACGAA
GAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGACGCGCGCAA
GATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGGGGGGCGTGG
GATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGGCAGCGCAAC
AATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCGCATGGGAGT
GAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGAGAGAAGATG
AAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAGTAGAGAGAG
AAAGAGAAATATGGAGTGAAGCGATTGACGTGACAGAGTGGGAAGCAGAA
GAGCAGGTGCTGTGTGTATGTGTGATTTGGGTGCGAGCTGCATGTGGGAG
TGGAGGAGAGGCAGGACATTCTTGGCGCGGGTAGTAGGGTGGTGAAACAA
AAGGTGAGTAGAACTGAGGGAGTGCAAGGCGCGCTATTGTGTATCGTGTT
CATACATGCATGCCGGGGCTTGCAGGGATCGGGATACATGGCCAGCGAGT
TCGGAGACATTTCACTTCACGTTGTCCACGAAAAGAAAAAGAGGCGACAG
TAT back to topCoding sequence (CDS) from alignment at chr3:1649649..1651751+ >NO03G05750.1 ID=NO03G05750.1|Name=NO03G05750.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr3:1649649..1651751+ (Nannochloropsis oceanica) ATGGAGAATGACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTC AGGTGGCTCCTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGG AGGACGATGAAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATG GAGGGCGTAGAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGG GCTAGCCTCATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAG ACGAGCGGACGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGT TATGGCGCAGATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATAT GCAGGAGGCGGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCG ATATTCATCATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACG AGCTACGAAGAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGA CGCGCGCAAGATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGG GGGGCGTGGGATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGG CAGCGCAACAATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCG CATGGGAGTGAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGA GAGAAGATGAAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAG TAG back to top
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