NO03G05680, NO03G05680 (gene) Nannochloropsis oceanica

Overview
NameNO03G05680
Unique NameNO03G05680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2326
Alignment locationchr3:1635453..1637778 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1635453..1637778 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027986TCAIM
IPR028031DUF4460
IPR027989DUF4461
Homology
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BLAST of NO03G05680 vs. NCBI_GenBank
Match: XP_005855031.1 (hypothetical protein NGA_0415300 [Nannochloropsis gaditana CCMP526] >EKU21329.1 hypothetical protein NGA_0415300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 325.1 bits (832), Expect = 4.800e-85
Identity = 177/308 (57.47%), Postives = 215/308 (69.81%), Query Frame = 0 
Query:  307 SVQLQSDWAAEHLALTLWRLEAALDEYGHSAFHVIHFAGLDLVLSPSXXXXXXXXXXXXXXL--QGR-RVDAWEGRVSLSPSDPPLHWIETLSQVREEDVREAEAGREEEAALVAAFQTHLLPGALLERGKTCSRRQYISWLQQLWEGGMKGGREGREDGPHEGLLRQWEHLRVRVEHDIRSRVLECGVLQANCTTLSSPHAVRELAERMGPEAAQARATFKIESEAVAELQACCMHPTALGLRSVQKQVGVSNGEMRACLHRLLALPTGSGGGGAREGLRGLDVVVGRTYGVTREGAVMLPWDWVLR 612
            + Q+ SDWAAEHLALTLWRLEAAL+EYG  A  V  FAG DLVL+PS                 +G  +  A EGR+ LSPSD PLHWI+ L QV  +DV EA+  R+EEA LVAAFQ+++LP A LERG+TCSR QYI+WLQ L  GG + G  GR++     LLR WEHLR+RVE DIR  VLECGVLQ +   L S  AV ELA R+GP AA+ARATF+ ES  + E++A C+    LGL+ V+K++GVS  EM  CL RLLALP G      REGL+GLDVVVG+TYG+TREG+V+LPW+WV R
Sbjct:    8 AAQMCSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGHPHLQSFGEEGNVKAAAKEGRLDLSPSDTPLHWIKLLRQVGVQDVWEAQGWRKEEAKLVAAFQSYVLPDAHLERGRTCSRSQYIAWLQSLGGGG-ESGLGGRKESME--LLRPWEHLRMRVESDIRPSVLECGVLQVDHARLPSKRAVLELAARLGPAAAEARATFESESRLLREVEAVCVSAAGLGLKGVRKELGVSTMEMMGCLERLLALPVGD---RTREGLKGLDVVVGKTYGITREGSVLLPWNWVTR 309
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BLAST of NO03G05680 vs. NCBI_GenBank
Match: EWM30040.1 (hypothetical protein Naga_100179g3 [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 8.400e-66
Identity = 202/459 (44.01%), Postives = 237/459 (51.63%), Query Frame = 0 
Query:   59 DPTTLIKRQFLLQVHPDFFTHYPRERSINSENLKWLNNYLDGASPSSSPFSSS-SPKSSFATDSGASPRDLIFYVKTRPTSNSATPFPASSPPPCSSPMSPSRVVVPLDGRVFHSLHTILSSHCQLGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPFLDRFLQSVSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQHMEATTVRLRAKWGFESVQLQSDWAAEHLALTLWRLEAALDEYGHSAFHVIHFAGLDLVLSPSXXXXXXXXXXXXXXLQGRRVDAWEGRVSLSPSDPPLHWIETLSQVREEDVREAEAGREEEAALVAAFQTHLLPGALLERGKTCSRRQYISWLQQLWEGGMKGGREGREDGPHEGLLRQWEHLRVRVEHDIRSRVLECGVLQANCTTLSSPHAVRELAERMGPE 517
            DPT +IK+QF LQVHPDFF  +PRE++INSENLK LNN+ + +S  SS  +S+ SP   FA   GASPRDL+FYVKTR     A P   SS P  +S   PSRVVVPL+ RVFHSLH ILS HC+LG+S              XXXXXXXXXX                                   APFLDRF+  + RR                             A+HMEAT  R+ AKWGFESVQL SDWAAEHLALTLWRLEAAL+EYG  A  V  FAG DLVL+PS              L+ RR +   G    +    P+ +  TL Q                            P +    G+TCSR QYI+WLQ L  GG + G  GR++     LLR WEHLR+RVE DIR  VLECGVLQ +       HA R  AE +G E
Sbjct:   65 DPTIIIKKQFFLQVHPDFFQQHPREQNINSENLKVLNNFFETSSQRSSSLASTISP--PFA-GIGASPRDLVFYVKTR-----ALPPRTSSTP--NSISLPSRVVVPLNDRVFHSLHEILSRHCELGSS------------LPXXXXXXXXXXPDHRSSIWDHIHEQAHDDWRWAWRRPCAEDEDEGWAPFLDRFVAHLQRR----ETKRGGGQKGRRGDGLGKLQDRKEAAEHMEATGARICAKWGFESVQLHSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGPSAPPELR-RRGECQSGSQRGAAGSVPIGYAPTLDQA---------------------------PAS----GRTCSRSQYIAWLQSLGGGG-ESGLGGRKESME--LLRPWEHLRMRVESDIRPSVLECGVLQVD-------HARR--AEGVGSE 453
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BLAST of NO03G05680 vs. NCBI_GenBank
Match: CBJ26898.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.5 bits (171), Expect = 2.100e-8
Identity = 88/334 (26.35%), Postives = 135/334 (40.42%), Query Frame = 0 
Query:  298 RLRAKWGFESVQLQSDWAAEHLALTLWR-LEAALDEYGHSAFHVIHFAGLDLVLSPSXXXXXXXXXXXXXXLQGRRVDAWEGRVSLSPSDPPLHWIETLSQVREEDVREAEAGREEEAALVAAFQTHLLPGALLERGKTCSRRQYISWLQQLW---EGGMKGGREGREDGPHEGLLRQWEHLRVRVEHDIR--SRVLECGVLQANCTTLSSPHAVRELAERMGPEA-AQARATFKIESEAVAELQACCMHPTALGLRSVQK-QVGVSNGEMRACLHRLLALPTGSGGGG----------AREGLRG--LDVV---VGRTYGVTREGAVMLPWDW 609
            +LR ++GF     +  W+  +L + L   LE      G   F V  F GL++V                           +G + L P+D P  W+  L +V    +  AE    E  +L     +  L GA L RG +CS+ +Y  +L ++    +               + +   W  LR RVE   R  S VLE G +Q     + S   ++ L   +G ++ + + AT      AVAE         +LGL S+++ +  V N EM      L+     +  GG          AR  LRG  + VV   VG   GVT +G ++LPW+W
Sbjct:  263 KLREQYGFGEFTFRCGWSKSNLCVALGSLLETCRARRGE--FLVNDFGGLEVVFRKDPSVLH------------------KGEIRLCPADVPNQWVSALRRVTPAGLSAAEEHSREMISLQEK-ASSALRGARLSRGFSCSKSRYRDFLSKVCAAADAEXXXXXXXXXXXATDLVEGDWSDLRCRVEEGFRRVSTVLEDGTIQ-----VGSDMTLKTLRRCLGRDSDSSSAATADYLKLAVAEAATVERCRQSLGLESIKRSRHAVGNSEMVIACEALVRFSERAKSGGDLRAEKEAVAARRRLRGHCVRVVGSRVGVCDGVTEDGEIVLPWNW 570
The following BLAST results are available for this feature:
BLAST of NO03G05680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855031.14.800e-8557.47hypothetical protein NGA_0415300 [Nannochloropsis ... [more]
EWM30040.18.400e-6644.01hypothetical protein Naga_100179g3 [Nannochloropsi... [more]
CBJ26898.12.100e-826.35expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005304NSK005304Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05680.1NO03G05680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100179g3gene606Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05680.1NO03G05680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05680 ID=NO03G05680|Name=NO03G05680|organism=Nannochloropsis oceanica|type=gene|length=2326bp
ATGCGAAGCTTGCGTCCACGCCTTCGTCCTCGCCACATCTGGACGGGCTG
CTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGCAGTCACACTGCC
TCATCCTCTGGCAGCAGTGGCATGGATCCCACCACTCTCATCAAACGACA
GTTTCTGCTGCAAGgtatgcacaccttcatagttcccgtacacaatcttt
ctcctatccctaaccaaacgcccaaatccttaccgtcctttcttaccctc
ccctctcccttttcacacaacagTCCACCCAGATTTCTTTACGCACTACC
CTCGAGAACGGAGCATCAACTCCGAAAACCTCAAATGGTTAAATAACTAT
CTTGATGGCGCGTCTCCTTCTTCCTCCCCCTTCTCATCTTCCTCCCCTAA
GTCGTCCTTCGCCACTGACAGTGGGGCCAGCCCTCGCGATCTGATTTTTT
ACGTCAAGACCCGGCCAACCAGCAACTCTGCTACCCCCTTCCCCGCTTCA
TCGCCTCCTCCTTGCTCCTCGCCTATGTCACCTTCGCGTGTGGTTGTGCC
GTTGGACGGGCGTGTCTTCCACTCCCTCCACACAATCCTCTCCAGCCACT
GCCAGCTGGGGGCCTCCCTCCCTCCACCCCTCCCCTCCCCCTCGCCCCCC
TTTACACCCTCCTCCCGCCCGTCCTCCTTCCACAACGATATGGACGACTT
GTCCGATTCCTTTGCTCGGGCGCGTGCCCGTGCGCGAGCTTACTGGGGAC
CCGCTCGACAGCGGCAGGAGGAGGAGGAAGAGGACTCACGCCCCGCCCCT
TTCCTCGATCGGTTCTTGCAGAGCGTGTCGCGGCGACAGAAGTATGAAGA
GCAGGAGGAAGAAGGGGTGGGAAGTGAAGGGAAAGGGGGAGGGTCGTCCT
GGCTCAGAAGGCGGCAGGCGGCGGCGCAGCACATGGAGGCGACGACCGTC
CGGCTTCGGGCCAAGTGGGGATTTGAGAGCGTCCAGCTGCAAAGgtacgt
agttcagtctaggcgtgggcttgacacaatgatctccctgccttttcaga
acgctatattaacattgtagaatgagcgcgtggatgcccaggtcctccgt
gagacctcgcccttgtttttctctgacaccccctccctcgcaccgtcgcc
ctccctcctctccgtcttttaccaccccagCGACTGGGCCGCGGAGCATC
TTGCCCTCACTCTTTGGCGGCTGGAGGCTGCCTTGGACGAATACGGCCAC
TCCGCCTTCCATGTCATCCACTTTGCCGGTCTCGACCTTGTCCTCTCTCC
CTCCCTCCCTCCCTCCCTCCCCCGGCATCACCCTATGTACCACCAGCTCC
AGGGTCGGAGGGTGGACGCGTGGGAGGGGCGAGTGAGCCTGTCGCCGTCG
GATCCACCATTGCACTGGATCGAGACTTTGAGTCAAGTCAGGGAGGAGGA
CGTGAGGGAGGCCGAGGCAGGGAGGGAGGAAGAGGCGGCATTGGTGGCTG
CTTTTCAGACCCACCTTCTCCCTGGGGCTCTCCTGGAGAGGGGGAAGACC
TGTTCCCGTCGACAGTACATTTCGTGGCTGCAGCAATTGTGGGAGGGCGG
GATGAAGGGCGGGAGAGAGGGAAGGGAGGACGGACCTCATGAAGGCTTGC
TTCGGCAGTGGGAGCATTTGCGGGTGCGGGTGGAGCATGACATCCGCTCG
CGTGTGTTGGAGTGCGGGGTTTTGCAGGCGAACTGCACAACGCTCTCCTC
CCCCCACGCCGTGCGGGAGCTGGCGGAGCGCATGGGCCCGGAGGCGGCCC
AGGCGCGGGCGACGTTCAAGATCGAGAGCGAGGCCGTGGCGGAGCTTCAA
GCCTGCTGCATGCACCCTACGGCGTTGGGGCTGAGGAGCGTGCAAAAACA
AGTAGGGGTCAGCAATGGGGAGATGAGGGCGTGTTTGCATCGACTGTTGG
CCTTGCCGACCGGAAGCGGAGGGGGGGGGGCGAGGGAGGGGCTGAGGGGC
CTGGACGTGGTTGTGGGGAGGACGTACGGGGTGACGCGGGAGGGTGCGGT
GATGCTGCCGTGGGACTGGGTTTTGAGGAATGGCGGCGGCGGGGGTCCAT
GGGGCGTGTGAGTACAGCGAATACTTCGGGGGTTTGACAGTGTGCATGTG
CACGTGCGTGGGTCAAGGAGAGCGTAACGATATAGCGAGATAAATCTGGG
GAAAAAGCAACACTGGTTCGATGAATTGTGGTCCGCGGGCTCGCTCTTTC
GGATGTGGCCCATTCGAATAGTTTTG
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protein sequence of NO03G05680.1

>NO03G05680.1-protein ID=NO03G05680.1-protein|Name=NO03G05680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MRSLRPRLRPRHIWTGCCSSSSSSSSSSSSSSSSSSSSSSSSSNRSSHTA
SSSGSSGMDPTTLIKRQFLLQVHPDFFTHYPRERSINSENLKWLNNYLDG
ASPSSSPFSSSSPKSSFATDSGASPRDLIFYVKTRPTSNSATPFPASSPP
PCSSPMSPSRVVVPLDGRVFHSLHTILSSHCQLGASLPPPLPSPSPPFTP
SSRPSSFHNDMDDLSDSFARARARARAYWGPARQRQEEEEEDSRPAPFLD
RFLQSVSRRQKYEEQEEEGVGSEGKGGGSSWLRRRQAAAQHMEATTVRLR
AKWGFESVQLQSDWAAEHLALTLWRLEAALDEYGHSAFHVIHFAGLDLVL
SPSLPPSLPRHHPMYHQLQGRRVDAWEGRVSLSPSDPPLHWIETLSQVRE
EDVREAEAGREEEAALVAAFQTHLLPGALLERGKTCSRRQYISWLQQLWE
GGMKGGREGREDGPHEGLLRQWEHLRVRVEHDIRSRVLECGVLQANCTTL
SSPHAVRELAERMGPEAAQARATFKIESEAVAELQACCMHPTALGLRSVQ
KQVGVSNGEMRACLHRLLALPTGSGGGGAREGLRGLDVVVGRTYGVTREG
AVMLPWDWVLRNGGGGGPWGV*
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Synonyms
Publications