NO03G05680.1, NO03G05680.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05680.1
Unique Name	NO03G05680.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2031
Alignment location	chr3:1635453..1637778 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1635453..1637778 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G05680.1 vs.
Match: XP_005855031.1 (hypothetical protein NGA_0415300 [Nannochloropsis gaditana CCMP526]; EKU21329.1 hypothetical protein NGA_0415300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 338.2 bits (866), Expect = 5.400e-89
Identity = 182/308 (59.09%), Postives = 220/308 (71.43%), Query Frame = 0

Query:  307 SVQLQSDWAAEHLALTLWRLEAALDEYGHSAFHVIHFAGLDLVLSPSLPPSLPRHHPMYHQL--QGR-RVDAWEGRVSLSPSDPPLHWIETLSQVREEDVREAEAGREEEAALVAAFQTHLLPGALLERGKTCSRRQYISWLQQLWEGGMKGGREGREDGPHEGLLRQWEHLRVRVEHDIRSRVLECGVLQANCTTLSSPHAVRELAERMGPEAAQARATFKIESEAVAELQACCMHPTALGLRSVQKQVGVSNGEMRACLHRLLALPTGSGGGGAREGLRGLDVVVGRTYGVTREGAVMLPWDWVLR 612
            + Q+ SDWAAEHLALTLWRLEAAL+EYG  A  V  FAG DLVL+PS  PSL   HP       +G  +  A EGR+ LSPSD PLHWI+ L QV  +DV EA+  R+EEA LVAAFQ+++LP A LERG+TCSR QYI+WLQ L  GG + G  GR++     LLR WEHLR+RVE DIR  VLECGVLQ +   L S  AV ELA R+GP AA+ARATF+ ES  + E++A C+    LGL+ V+K++GVS  EM  CL RLLALP G      REGL+GLDVVVG+TYG+TREG+V+LPW+WV R
Sbjct:    8 AAQMCSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGHPHLQSFGEEGNVKAAAKEGRLDLSPSDTPLHWIKLLRQVGVQDVWEAQGWRKEEAKLVAAFQSYVLPDAHLERGRTCSRSQYIAWLQSLGGGG-ESGLGGRKESME--LLRPWEHLRMRVESDIRPSVLECGVLQVDHARLPSKRAVLELAARLGPAAAEARATFESESRLLREVEAVCVSAAGLGLKGVRKELGVSTMEMMGCLERLLALPVGD---RTREGLKGLDVVVGKTYGITREGSVLLPWNWVTR 309

The following BLAST results are available for this feature:

BLAST of NO03G05680.1 vs.

BLAST of NO03G05680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855031.1	5.400e-89	59.09	hypothetical protein NGA_0415300 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05680	NO03G05680	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05680.1	NO03G05680.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05680.1.cds1	NO03G05680.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05680.1.cds2	NO03G05680.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05680.1.cds3	NO03G05680.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1635453..1637778-
coding sequence from alignment at chr3:1635453..1637778-

mRNA sequence

>NO03G05680.1 ID=NO03G05680.1|Name=NO03G05680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
ATGCGAAGCTTGCGTCCACGCCTTCGTCCTCGCCACATCTGGACGGGCTG
CTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGCAGTCACACTGCC
TCATCCTCTGGCAGCAGTGGCATGGATCCCACCACTCTCATCAAACGACA
GTTTCTGCTGCAAGTCCACCCAGATTTCTTTACGCACTACCCTCGAGAAC
GGAGCATCAACTCCGAAAACCTCAAATGGTTAAATAACTATCTTGATGGC
GCGTCTCCTTCTTCCTCCCCCTTCTCATCTTCCTCCCCTAAGTCGTCCTT
CGCCACTGACAGTGGGGCCAGCCCTCGCGATCTGATTTTTTACGTCAAGA
CCCGGCCAACCAGCAACTCTGCTACCCCCTTCCCCGCTTCATCGCCTCCT
CCTTGCTCCTCGCCTATGTCACCTTCGCGTGTGGTTGTGCCGTTGGACGG
GCGTGTCTTCCACTCCCTCCACACAATCCTCTCCAGCCACTGCCAGCTGG
GGGCCTCCCTCCCTCCACCCCTCCCCTCCCCCTCGCCCCCCTTTACACCC
TCCTCCCGCCCGTCCTCCTTCCACAACGATATGGACGACTTGTCCGATTC
CTTTGCTCGGGCGCGTGCCCGTGCGCGAGCTTACTGGGGACCCGCTCGAC
AGCGGCAGGAGGAGGAGGAAGAGGACTCACGCCCCGCCCCTTTCCTCGAT
CGGTTCTTGCAGAGCGTGTCGCGGCGACAGAAGTATGAAGAGCAGGAGGA
AGAAGGGGTGGGAAGTGAAGGGAAAGGGGGAGGGTCGTCCTGGCTCAGAA
GGCGGCAGGCGGCGGCGCAGCACATGGAGGCGACGACCGTCCGGCTTCGG
GCCAAGTGGGGATTTGAGAGCGTCCAGCTGCAAAGCGACTGGGCCGCGGA
GCATCTTGCCCTCACTCTTTGGCGGCTGGAGGCTGCCTTGGACGAATACG
GCCACTCCGCCTTCCATGTCATCCACTTTGCCGGTCTCGACCTTGTCCTC
TCTCCCTCCCTCCCTCCCTCCCTCCCCCGGCATCACCCTATGTACCACCA
GCTCCAGGGTCGGAGGGTGGACGCGTGGGAGGGGCGAGTGAGCCTGTCGC
CGTCGGATCCACCATTGCACTGGATCGAGACTTTGAGTCAAGTCAGGGAG
GAGGACGTGAGGGAGGCCGAGGCAGGGAGGGAGGAAGAGGCGGCATTGGT
GGCTGCTTTTCAGACCCACCTTCTCCCTGGGGCTCTCCTGGAGAGGGGGA
AGACCTGTTCCCGTCGACAGTACATTTCGTGGCTGCAGCAATTGTGGGAG
GGCGGGATGAAGGGCGGGAGAGAGGGAAGGGAGGACGGACCTCATGAAGG
CTTGCTTCGGCAGTGGGAGCATTTGCGGGTGCGGGTGGAGCATGACATCC
GCTCGCGTGTGTTGGAGTGCGGGGTTTTGCAGGCGAACTGCACAACGCTC
TCCTCCCCCCACGCCGTGCGGGAGCTGGCGGAGCGCATGGGCCCGGAGGC
GGCCCAGGCGCGGGCGACGTTCAAGATCGAGAGCGAGGCCGTGGCGGAGC
TTCAAGCCTGCTGCATGCACCCTACGGCGTTGGGGCTGAGGAGCGTGCAA
AAACAAGTAGGGGTCAGCAATGGGGAGATGAGGGCGTGTTTGCATCGACT
GTTGGCCTTGCCGACCGGAAGCGGAGGGGGGGGGGCGAGGGAGGGGCTGA
GGGGCCTGGACGTGGTTGTGGGGAGGACGTACGGGGTGACGCGGGAGGGT
GCGGTGATGCTGCCGTGGGACTGGGTTTTGAGGAATGGCGGCGGCGGGGG
TCCATGGGGCGTGTGAGTACAGCGAATACTTCGGGGGTTTGACAGTGTGC
ATGTGCACGTGCGTGGGTCAAGGAGAGCGTAACGATATAGCGAGATAAAT
CTGGGGAAAAAGCAACACTGGTTCGATGAATTGTGGTCCGCGGGCTCGCT
CTTTCGGATGTGGCCCATTCGAATAGTTTTG

protein sequence of NO03G05680.1

>NO03G05680.1-protein ID=NO03G05680.1-protein|Name=NO03G05680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MRSLRPRLRPRHIWTGCCSSSSSSSSSSSSSSSSSSSSSSSSSNRSSHTA
SSSGSSGMDPTTLIKRQFLLQVHPDFFTHYPRERSINSENLKWLNNYLDG
ASPSSSPFSSSSPKSSFATDSGASPRDLIFYVKTRPTSNSATPFPASSPP
PCSSPMSPSRVVVPLDGRVFHSLHTILSSHCQLGASLPPPLPSPSPPFTP
SSRPSSFHNDMDDLSDSFARARARARAYWGPARQRQEEEEEDSRPAPFLD
RFLQSVSRRQKYEEQEEEGVGSEGKGGGSSWLRRRQAAAQHMEATTVRLR
AKWGFESVQLQSDWAAEHLALTLWRLEAALDEYGHSAFHVIHFAGLDLVL
SPSLPPSLPRHHPMYHQLQGRRVDAWEGRVSLSPSDPPLHWIETLSQVRE
EDVREAEAGREEEAALVAAFQTHLLPGALLERGKTCSRRQYISWLQQLWE
GGMKGGREGREDGPHEGLLRQWEHLRVRVEHDIRSRVLECGVLQANCTTL
SSPHAVRELAERMGPEAAQARATFKIESEAVAELQACCMHPTALGLRSVQ
KQVGVSNGEMRACLHRLLALPTGSGGGGAREGLRGLDVVVGRTYGVTREG
AVMLPWDWVLRNGGGGGPWGV*

mRNA from alignment at chr3:1635453..1637778-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05680.1 ID=NO03G05680.1|Name=NO03G05680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp|location=Sequence derived from alignment at chr3:1635453..1637778- (Nannochloropsis oceanica)
ATGCGAAGCTTGCGTCCACGCCTTCGTCCTCGCCACATCTGGACGGGCTG
CTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGCAGTCACACTGCC
TCATCCTCTGGCAGCAGTGGCATGGATCCCACCACTCTCATCAAACGACA
GTTTCTGCTGCAAGGTATGCACACCTTCATAGTTCCCGTACACAATCTTT
CTCCTATCCCTAACCAAACGCCCAAATCCTTACCGTCCTTTCTTACCCTC
CCCTCTCCCTTTTCACACAACAGTCCACCCAGATTTCTTTACGCACTACC
CTCGAGAACGGAGCATCAACTCCGAAAACCTCAAATGGTTAAATAACTAT
CTTGATGGCGCGTCTCCTTCTTCCTCCCCCTTCTCATCTTCCTCCCCTAA
GTCGTCCTTCGCCACTGACAGTGGGGCCAGCCCTCGCGATCTGATTTTTT
ACGTCAAGACCCGGCCAACCAGCAACTCTGCTACCCCCTTCCCCGCTTCA
TCGCCTCCTCCTTGCTCCTCGCCTATGTCACCTTCGCGTGTGGTTGTGCC
GTTGGACGGGCGTGTCTTCCACTCCCTCCACACAATCCTCTCCAGCCACT
GCCAGCTGGGGGCCTCCCTCCCTCCACCCCTCCCCTCCCCCTCGCCCCCC
TTTACACCCTCCTCCCGCCCGTCCTCCTTCCACAACGATATGGACGACTT
GTCCGATTCCTTTGCTCGGGCGCGTGCCCGTGCGCGAGCTTACTGGGGAC
CCGCTCGACAGCGGCAGGAGGAGGAGGAAGAGGACTCACGCCCCGCCCCT
TTCCTCGATCGGTTCTTGCAGAGCGTGTCGCGGCGACAGAAGTATGAAGA
GCAGGAGGAAGAAGGGGTGGGAAGTGAAGGGAAAGGGGGAGGGTCGTCCT
GGCTCAGAAGGCGGCAGGCGGCGGCGCAGCACATGGAGGCGACGACCGTC
CGGCTTCGGGCCAAGTGGGGATTTGAGAGCGTCCAGCTGCAAAGGTACGT
AGTTCAGTCTAGGCGTGGGCTTGACACAATGATCTCCCTGCCTTTTCAGA
ACGCTATATTAACATTGTAGAATGAGCGCGTGGATGCCCAGGTCCTCCGT
GAGACCTCGCCCTTGTTTTTCTCTGACACCCCCTCCCTCGCACCGTCGCC
CTCCCTCCTCTCCGTCTTTTACCACCCCAGCGACTGGGCCGCGGAGCATC
TTGCCCTCACTCTTTGGCGGCTGGAGGCTGCCTTGGACGAATACGGCCAC
TCCGCCTTCCATGTCATCCACTTTGCCGGTCTCGACCTTGTCCTCTCTCC
CTCCCTCCCTCCCTCCCTCCCCCGGCATCACCCTATGTACCACCAGCTCC
AGGGTCGGAGGGTGGACGCGTGGGAGGGGCGAGTGAGCCTGTCGCCGTCG
GATCCACCATTGCACTGGATCGAGACTTTGAGTCAAGTCAGGGAGGAGGA
CGTGAGGGAGGCCGAGGCAGGGAGGGAGGAAGAGGCGGCATTGGTGGCTG
CTTTTCAGACCCACCTTCTCCCTGGGGCTCTCCTGGAGAGGGGGAAGACC
TGTTCCCGTCGACAGTACATTTCGTGGCTGCAGCAATTGTGGGAGGGCGG
GATGAAGGGCGGGAGAGAGGGAAGGGAGGACGGACCTCATGAAGGCTTGC
TTCGGCAGTGGGAGCATTTGCGGGTGCGGGTGGAGCATGACATCCGCTCG
CGTGTGTTGGAGTGCGGGGTTTTGCAGGCGAACTGCACAACGCTCTCCTC
CCCCCACGCCGTGCGGGAGCTGGCGGAGCGCATGGGCCCGGAGGCGGCCC
AGGCGCGGGCGACGTTCAAGATCGAGAGCGAGGCCGTGGCGGAGCTTCAA
GCCTGCTGCATGCACCCTACGGCGTTGGGGCTGAGGAGCGTGCAAAAACA
AGTAGGGGTCAGCAATGGGGAGATGAGGGCGTGTTTGCATCGACTGTTGG
CCTTGCCGACCGGAAGCGGAGGGGGGGGGGCGAGGGAGGGGCTGAGGGGC
CTGGACGTGGTTGTGGGGAGGACGTACGGGGTGACGCGGGAGGGTGCGGT
GATGCTGCCGTGGGACTGGGTTTTGAGGAATGGCGGCGGCGGGGGTCCAT
GGGGCGTGTGAGTACAGCGAATACTTCGGGGGTTTGACAGTGTGCATGTG
CACGTGCGTGGGTCAAGGAGAGCGTAACGATATAGCGAGATAAATCTGGG
GAAAAAGCAACACTGGTTCGATGAATTGTGGTCCGCGGGCTCGCTCTTTC
GGATGTGGCCCATTCGAATAGTTTTG

Coding sequence (CDS) from alignment at chr3:1635453..1637778-

>NO03G05680.1 ID=NO03G05680.1|Name=NO03G05680.1|organism=Nannochloropsis oceanica|type=CDS|length=1866bp|location=Sequence derived from alignment at chr3:1635453..1637778- (Nannochloropsis oceanica)
ATGCGAAGCTTGCGTCCACGCCTTCGTCCTCGCCACATCTGGACGGGCTG
CTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGAGCAGTCACACTGCC
TCATCCTCTGGCAGCAGTGGCATGGATCCCACCACTCTCATCAAACGACA
GTTTCTGCTGCAAGTCCACCCAGATTTCTTTACGCACTACCCTCGAGAAC
GGAGCATCAACTCCGAAAACCTCAAATGGTTAAATAACTATCTTGATGGC
GCGTCTCCTTCTTCCTCCCCCTTCTCATCTTCCTCCCCTAAGTCGTCCTT
CGCCACTGACAGTGGGGCCAGCCCTCGCGATCTGATTTTTTACGTCAAGA
CCCGGCCAACCAGCAACTCTGCTACCCCCTTCCCCGCTTCATCGCCTCCT
CCTTGCTCCTCGCCTATGTCACCTTCGCGTGTGGTTGTGCCGTTGGACGG
GCGTGTCTTCCACTCCCTCCACACAATCCTCTCCAGCCACTGCCAGCTGG
GGGCCTCCCTCCCTCCACCCCTCCCCTCCCCCTCGCCCCCCTTTACACCC
TCCTCCCGCCCGTCCTCCTTCCACAACGATATGGACGACTTGTCCGATTC
CTTTGCTCGGGCGCGTGCCCGTGCGCGAGCTTACTGGGGACCCGCTCGAC
AGCGGCAGGAGGAGGAGGAAGAGGACTCACGCCCCGCCCCTTTCCTCGAT
CGGTTCTTGCAGAGCGTGTCGCGGCGACAGAAGTATGAAGAGCAGGAGGA
AGAAGGGGTGGGAAGTGAAGGGAAAGGGGGAGGGTCGTCCTGGCTCAGAA
GGCGGCAGGCGGCGGCGCAGCACATGGAGGCGACGACCGTCCGGCTTCGG
GCCAAGTGGGGATTTGAGAGCGTCCAGCTGCAAAGCGACTGGGCCGCGGA
GCATCTTGCCCTCACTCTTTGGCGGCTGGAGGCTGCCTTGGACGAATACG
GCCACTCCGCCTTCCATGTCATCCACTTTGCCGGTCTCGACCTTGTCCTC
TCTCCCTCCCTCCCTCCCTCCCTCCCCCGGCATCACCCTATGTACCACCA
GCTCCAGGGTCGGAGGGTGGACGCGTGGGAGGGGCGAGTGAGCCTGTCGC
CGTCGGATCCACCATTGCACTGGATCGAGACTTTGAGTCAAGTCAGGGAG
GAGGACGTGAGGGAGGCCGAGGCAGGGAGGGAGGAAGAGGCGGCATTGGT
GGCTGCTTTTCAGACCCACCTTCTCCCTGGGGCTCTCCTGGAGAGGGGGA
AGACCTGTTCCCGTCGACAGTACATTTCGTGGCTGCAGCAATTGTGGGAG
GGCGGGATGAAGGGCGGGAGAGAGGGAAGGGAGGACGGACCTCATGAAGG
CTTGCTTCGGCAGTGGGAGCATTTGCGGGTGCGGGTGGAGCATGACATCC
GCTCGCGTGTGTTGGAGTGCGGGGTTTTGCAGGCGAACTGCACAACGCTC
TCCTCCCCCCACGCCGTGCGGGAGCTGGCGGAGCGCATGGGCCCGGAGGC
GGCCCAGGCGCGGGCGACGTTCAAGATCGAGAGCGAGGCCGTGGCGGAGC
TTCAAGCCTGCTGCATGCACCCTACGGCGTTGGGGCTGAGGAGCGTGCAA
AAACAAGTAGGGGTCAGCAATGGGGAGATGAGGGCGTGTTTGCATCGACT
GTTGGCCTTGCCGACCGGAAGCGGAGGGGGGGGGGCGAGGGAGGGGCTGA
GGGGCCTGGACGTGGTTGTGGGGAGGACGTACGGGGTGACGCGGGAGGGT
GCGGTGATGCTGCCGTGGGACTGGGTTTTGAGGAATGGCGGCGGCGGGGG
TCCATGGGGCGTGTGA

Synonyms

Publications