NO03G05630, NO03G05630 (gene) Nannochloropsis oceanica

Overview
NameNO03G05630
Unique NameNO03G05630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1139
Alignment locationchr3:1621784..1622922 -

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Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1621784..1622922 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO03G05630 vs. NCBI_GenBank
Match: EWM30041.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 362.1 bits (928), Expect = 2.000e-96
Identity = 204/366 (55.74%), Postives = 253/366 (69.13%), Query Frame = 0 
Query:    1 MDVIHSAISRGDLMKVKSLCEHEPDLLYLDDWQARTPLVLSVLANSLPLVKFFAEEVEEAARAMVDEPTAPDNNTALFYACRDGRVELASYLLARG-ADPWQRNRYGTTLFMITAASAPSXXXXXXXXXXXXSATGVLLCLLEVINRSGEGGGRGRLHELLNAQNRNGKTALALACERGASDVVVVLVAAGANPFLFPAA---VCEEEGKXXXXEQGEAWECVYEARRAPARISFLEKIRCLADASHALEKLQEA-EMTSGEG---MRTSDGEGKEEPEEHQQPQWQEGQKAQQKRTVKCLATFPLALQGRVAQEEEVPRVVLASKGDEKLLHVIRHVLIEGGLKPELFVELIEGMLVPTWHFEHM 359
            MDVIH AI+RGD+ +V++LCE EPDLLYLDDWQARTPL+LSVLA+SLPLV+FF EEV   A+A VDE TAPD NTALFYACRDGR+E+A YLL RG ADP+Q+NRY TTLFMI AASAPS            SA+GV+L LLE INR G GG  G L++ LNA N N KTALALACERGA D++ VL+AAGANP+L PA    V +        ++     C+  ARRAP R+ F+ KIRCLAD  HAL K  EA E  + E    +   DGE  ++    Q  + +  Q+ Q  +  K +A     L+ RV  + E+PRV+L ++GDE+L  V RHVLIEGGLK ELFVEL+EG++VP W ++H+
Sbjct:   16 MDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPS-TCAENKEGKGPSASGVILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISVLIAAGANPYLLPAGKEEVFKSSTDGDPSKKEILVSCIQVARRAPERVYFMSKIRCLADTMHALRKSTEAKESLTAEAIAEVSECDGEEGQQDVPIQNIKTRYDQELQHYQMKKSMAIASEVLKRRVEGKTEIPRVLLTTEGDERLREVARHVLIEGGLKLELFVELMEGLVVPQWFYDHL 380
The following BLAST results are available for this feature:
BLAST of NO03G05630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30041.12.000e-9655.74ankyrin repeat protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005309NSK005309Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05630.1NO03G05630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667636gene_1776Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100179g8gene610Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05630.1NO03G05630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05630 ID=NO03G05630|Name=NO03G05630|organism=Nannochloropsis oceanica|type=gene|length=1139bp
AGGCACAGACAGGGGTCAATCAGTTCAAGTCACGCAATGGACGTGATCCA
CTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAAAAGTCTATGCGAGC
ACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAGCCCGCACACCTTTG
GTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTGAAGTTCTTTGCCGA
AGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGAGCCCACAGCTCCTG
ATAATAACACGGCGCTTTTTTATGCGTGCCGGGATGGTCGCGTGGAGCTG
GCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGGCAGCGAAATCGGTA
CGGTACTACTCTCTTTATGATTACGGCGGCCTCGGCTCCTAGTGGAGGTG
GTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGACGGGGGTGCTGCTG
TGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGTGGCGGGAGGGGACG
CTTGCACGAACTTCTGAATGCGCAGAATCGCAATGGCAAAACGGCGCTGG
CCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGGTCGTTCTGGTTGCC
GCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTCTGTGAGGAGGAAGG
GAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGAGTGTGTCTACGAAG
CTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAAAAATTCGTTGCCTA
GCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAGGCGGAAATGACCTC
AGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAAGGAGGAGCCTGAAG
AGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAGCGCAACAGAAACGA
ACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTCCAAGGCCGAGTGGC
ACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAGCAAGGGCGACGAGA
AGTTGTTGCATGTGATCCGGCATGTCTTGATCGAGGGAGGGCTGAAACCG
GAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTGCCTACCTGGCATTT
TGAACACATGTAAAGAAAGAAAGACGCAATAAAGTGCCA
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protein sequence of NO03G05630.1

>NO03G05630.1-protein ID=NO03G05630.1-protein|Name=NO03G05630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MDVIHSAISRGDLMKVKSLCEHEPDLLYLDDWQARTPLVLSVLANSLPLV
KFFAEEVEEAARAMVDEPTAPDNNTALFYACRDGRVELASYLLARGADPW
QRNRYGTTLFMITAASAPSGGGEGGGQCGGASATGVLLCLLEVINRSGEG
GGRGRLHELLNAQNRNGKTALALACERGASDVVVVLVAAGANPFLFPAAV
CEEEGKKKEEEQGEAWECVYEARRAPARISFLEKIRCLADASHALEKLQE
AEMTSGEGMRTSDGEGKEEPEEHQQPQWQEGQKAQQKRTVKCLATFPLAL
QGRVAQEEEVPRVVLASKGDEKLLHVIRHVLIEGGLKPELFVELIEGMLV
PTWHFEHM*
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Synonyms
Publications