NO03G05630.1, NO03G05630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05630.1
Unique NameNO03G05630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1139
Alignment locationchr3:1621784..1622922 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1621784..1622922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05630.1 vs.
Match: EWM30041.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 364.0 bits (933), Expect = 5.300e-97
Identity = 209/367 (56.95%), Postives = 257/367 (70.03%), Query Frame = 0 
Query:    1 MDVIHSAISRGDLMKVKSLCEHEPDLLYLDDWQARTPLVLSVLANSLPLVKFFAEEVEEAARAMVDEPTAPDNNTALFYACRDGRVELASYLLARG-ADPWQRNRYGTTLFMITAASAPSGGGEGGGQCGGASATGVLLCLLEVINRSGEGGGRGRLHELLNAQNRNGKTALALACERGASDVVVVLVAAGANPFLFPAAVCEEEGKKKEEEQGEAWE----CVYEARRAPARISFLEKIRCLADASHALEKLQEA-EMTSGEG---MRTSDGEGKEEPEEHQQPQWQEGQKAQQKRTVKCLATFPLALQGRVAQEEEVPRVVLASKGDEKLLHVIRHVLIEGGLKPELFVELIEGMLVPTWHFEHM 359
            MDVIH AI+RGD+ +V++LCE EPDLLYLDDWQARTPL+LSVLA+SLPLV+FF EEV   A+A VDE TAPD NTALFYACRDGR+E+A YLL RG ADP+Q+NRY TTLFMI AASAPS   E   +  G SA+GV+L LLE INR G GG  G L++ LNA N N KTALALACERGA D++ VL+AAGANP+L PA   EE  K   +      E    C+  ARRAP R+ F+ KIRCLAD  HAL K  EA E  + E    +   DGE  ++    Q  + +  Q+ Q  +  K +A     L+ RV  + E+PRV+L ++GDE+L  V RHVLIEGGLK ELFVEL+EG++VP W ++H+
Sbjct:   16 MDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAE-NKEGKGPSASGVILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISVLIAAGANPYLLPAGK-EEVFKSSTDGDPSKKEILVSCIQVARRAPERVYFMSKIRCLADTMHALRKSTEAKESLTAEAIAEVSECDGEEGQQDVPIQNIKTRYDQELQHYQMKKSMAIASEVLKRRVEGKTEIPRVLLTTEGDERLREVARHVLIEGGLKLELFVELMEGLVVPQWFYDHL 380
The following BLAST results are available for this feature:
BLAST of NO03G05630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30041.15.300e-9756.95ankyrin repeat protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05630NO03G05630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05630.1NO03G05630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05630.1.cds1NO03G05630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05630.1 ID=NO03G05630.1|Name=NO03G05630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
AGGCACAGACAGGGGTCAATCAGTTCAAGTCACGCAATGGACGTGATCCA
CTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAAAAGTCTATGCGAGC
ACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAGCCCGCACACCTTTG
GTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTGAAGTTCTTTGCCGA
AGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGAGCCCACAGCTCCTG
ATAATAACACGGCGCTTTTTTATGCGTGCCGGGATGGTCGCGTGGAGCTG
GCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGGCAGCGAAATCGGTA
CGGTACTACTCTCTTTATGATTACGGCGGCCTCGGCTCCTAGTGGAGGTG
GTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGACGGGGGTGCTGCTG
TGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGTGGCGGGAGGGGACG
CTTGCACGAACTTCTGAATGCGCAGAATCGCAATGGCAAAACGGCGCTGG
CCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGGTCGTTCTGGTTGCC
GCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTCTGTGAGGAGGAAGG
GAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGAGTGTGTCTACGAAG
CTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAAAAATTCGTTGCCTA
GCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAGGCGGAAATGACCTC
AGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAAGGAGGAGCCTGAAG
AGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAGCGCAACAGAAACGA
ACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTCCAAGGCCGAGTGGC
ACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAGCAAGGGCGACGAGA
AGTTGTTGCATGTGATCCGGCATGTCTTGATCGAGGGAGGGCTGAAACCG
GAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTGCCTACCTGGCATTT
TGAACACATGTAAAGAAAGAAAGACGCAATAAAGTGCCA
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protein sequence of NO03G05630.1

>NO03G05630.1-protein ID=NO03G05630.1-protein|Name=NO03G05630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MDVIHSAISRGDLMKVKSLCEHEPDLLYLDDWQARTPLVLSVLANSLPLV
KFFAEEVEEAARAMVDEPTAPDNNTALFYACRDGRVELASYLLARGADPW
QRNRYGTTLFMITAASAPSGGGEGGGQCGGASATGVLLCLLEVINRSGEG
GGRGRLHELLNAQNRNGKTALALACERGASDVVVVLVAAGANPFLFPAAV
CEEEGKKKEEEQGEAWECVYEARRAPARISFLEKIRCLADASHALEKLQE
AEMTSGEGMRTSDGEGKEEPEEHQQPQWQEGQKAQQKRTVKCLATFPLAL
QGRVAQEEEVPRVVLASKGDEKLLHVIRHVLIEGGLKPELFVELIEGMLV
PTWHFEHM*
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mRNA from alignment at chr3:1621784..1622922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05630.1 ID=NO03G05630.1|Name=NO03G05630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at chr3:1621784..1622922- (Nannochloropsis oceanica)
AGGCACAGACAGGGGTCAATCAGTTCAAGTCACGCAATGGACGTGATCCA
CTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAAAAGTCTATGCGAGC
ACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAGCCCGCACACCTTTG
GTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTGAAGTTCTTTGCCGA
AGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGAGCCCACAGCTCCTG
ATAATAACACGGCGCTTTTTTATGCGTGCCGGGATGGTCGCGTGGAGCTG
GCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGGCAGCGAAATCGGTA
CGGTACTACTCTCTTTATGATTACGGCGGCCTCGGCTCCTAGTGGAGGTG
GTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGACGGGGGTGCTGCTG
TGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGTGGCGGGAGGGGACG
CTTGCACGAACTTCTGAATGCGCAGAATCGCAATGGCAAAACGGCGCTGG
CCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGGTCGTTCTGGTTGCC
GCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTCTGTGAGGAGGAAGG
GAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGAGTGTGTCTACGAAG
CTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAAAAATTCGTTGCCTA
GCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAGGCGGAAATGACCTC
AGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAAGGAGGAGCCTGAAG
AGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAGCGCAACAGAAACGA
ACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTCCAAGGCCGAGTGGC
ACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAGCAAGGGCGACGAGA
AGTTGTTGCATGTGATCCGGCATGTCTTGATCGAGGGAGGGCTGAAACCG
GAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTGCCTACCTGGCATTT
TGAACACATGTAAAGAAAGAAAGACGCAATAAAGTGCCA
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Coding sequence (CDS) from alignment at chr3:1621784..1622922-

>NO03G05630.1 ID=NO03G05630.1|Name=NO03G05630.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr3:1621784..1622922- (Nannochloropsis oceanica)
ATGGACGTGATCCACTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAA
AAGTCTATGCGAGCACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAG
CCCGCACACCTTTGGTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTG
AAGTTCTTTGCCGAAGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGA
GCCCACAGCTCCTGATAATAACACGGCGCTTTTTTATGCGTGCCGGGATG
GTCGCGTGGAGCTGGCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGG
CAGCGAAATCGGTACGGTACTACTCTCTTTATGATTACGGCGGCCTCGGC
TCCTAGTGGAGGTGGTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGA
CGGGGGTGCTGCTGTGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGT
GGCGGGAGGGGACGCTTGCACGAACTTCTGAATGCGCAGAATCGCAATGG
CAAAACGGCGCTGGCCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGG
TCGTTCTGGTTGCCGCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTC
TGTGAGGAGGAAGGGAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGA
GTGTGTCTACGAAGCTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAA
AAATTCGTTGCCTAGCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAG
GCGGAAATGACCTCAGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAA
GGAGGAGCCTGAAGAGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAG
CGCAACAGAAACGAACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTC
CAAGGCCGAGTGGCACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAG
CAAGGGCGACGAGAAGTTGTTGCATGTGATCCGGCATGTCTTGATCGAGG
GAGGGCTGAAACCGGAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTG
CCTACCTGGCATTTTGAACACATGTAA
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Synonyms
Publications