NO03G05530, NO03G05530 (gene) Nannochloropsis oceanica

Overview
NameNO03G05530
Unique NameNO03G05530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2247
Alignment locationchr3:1585550..1587796 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1585550..1587796 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G05530 vs. NCBI_GenBank
Match: EWM30030.1 (hypothetical protein Naga_100346g1 [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 2.600e-42
Identity = 88/146 (60.27%), Postives = 114/146 (78.08%), Query Frame = 0 
Query:    1 MSPNLPPPLSRRLPAPLARVRRYIEESWESVRPMDNPPGYDEAHGISTKEKAGNKRWRNPVEHARVWQRAFQAWRNSFDYDTFRREGGLGRGLVRGKAGDDADAVLRNGWTPEATSATLMEEKKKEMEVFVKERMRDVKLQLSEEE 147
            M    PP L RR+P  LARVRRY+EESW S++PMDNPPGYDEA G++ KE    +RWR+P+EHAR WQRAF++W+NSFDYD F  EGGLGRGLVRG+AGD AD  L+NGW+PEA +  L++  +KE+E  V+E++R  + +L+EEE
Sbjct:   17 MPAQFPPSLKRRMPGSLARVRRYLEESWGSLQPMDNPPGYDEALGVTAKEDK-PRRWRSPLEHARTWQRAFKSWQNSFDYDKFTLEGGLGRGLVRGEAGDRADEALKNGWSPEA-ARVLVDGDEKEVESLVREKLRGCRTELTEEE 160
The following BLAST results are available for this feature:
BLAST of NO03G05530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30030.12.600e-4260.27hypothetical protein Naga_100346g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005320NSK005320Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05530.2NO03G05530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G05530.1NO03G05530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|16811gene_1765Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100346g1gene622Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05530.2NO03G05530.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G05530.1NO03G05530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05530 ID=NO03G05530|Name=NO03G05530|organism=Nannochloropsis oceanica|type=gene|length=2247bp
CACGCCATTACTGAACTCAGTCGGTCCGACATTCCCACAGGAAAGGAAAA
GATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCCT
TGGCCCGGGTTCGTCGgtaagttttgtggagggtggggtgtggtgtcggt
tgtttttgctcaccgttccagcaagcaacagcctctctctccccttctac
atcacatccgtatcaaccgctccctccctccttgcccttctccttcttcc
ctccctccgttctagTTATATTGAGGAATCATGGGAAAGTGTGCGTCCCA
TGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGAG
AAGGCAGGGAACAAGCGATGgtatggacccctggtgtgcgtgcccgtatg
catggccgttggttacccttccttcccccttcattttgtcccaggcccta
cgaatgacagattaccttaccttagaccaacaatccccctaccccccttt
cccccctatcccccctaatttttcttacttccgctcttctctcccatccc
tcctccctccctcctccgacttctccatgcccaaattacaacagGCGTAA
CCCTGTCGAACACGCCCGCGTCTGGCAACGAGCCTTTCAAGCCTGGCGCA
ATTCTTTTGACTACGATACCTTTAGGAGGGAGGGAGGACTAGGCCGGGGG
TTGGTGCGGGGGAAGGCGGGAGACGACGCAGATGCTGTGTTGAGGAATGG
GTGGACTCCTGAGGCGACTAGCGCGACCTTGATGGAGGAGAAAAAGAAGG
AGATGGAGGTGTTTGTGAAGGAGAGAATGAGAGACGTAAAGCTGCAACTG
AGTGAGGAGGAGATCAAGGCCGAGGTGGAGACTCTTAGGAAGGAATGGAC
GGAGGGGAAGCACCAGTTGGAGGAAGTTGCCACGGATAGGATGGAGCTGg
tgaggaggaagggagggagggggggagggagagagaggagggagaaaggg
ctagagaagggctgaagcggcggtgtgtgcactggagagacgaaaataac
cctaacccaaaccttcttgtagtccgtctgttcagagttaagtatgactc
cgtctctcttctcattccctcactatcaccccttttcctgccgccctccc
ttcctctctccctccttcctcttcttcgcctcccccgtagCTACGGATAA
CCGTCCGGGAGTTCGTGGCGGGGTACAAGGAAGGCCGAGACCACAGCGCG
GAGGAAGTGCAGGCGGCCATCGAGAAGCAGgtagagggggagggagggag
ggagggaaggagggaagaggtcgagccagccagtactaaagcgggtcctt
ctatctcctttttgcacatgcaattacagATGGCGGCCTTCAGATCGTTA
GTATTAGAGGGGGAATGGACGGCCGAGGCAGTTGAAGAgtaagtgcttgc
gtgtcttgttggtgtgatgtgatgcgccctctccctccttccctccctcc
ctcctttcctccctcctcttgctggtgtgagttgaccctttgtgatatgc
ctttaatccctcttccttgtctcctctgtccctctgtccctttgtccctc
tatccctccctccctccctccctcatcccctccatgccctataagcacca
gctcccaacccacacacatactctccctccctccctccctctctcccccc
cccctctcccttgtagAAACAAGCAGAAGAATCTCCGGGCTCTAAGAGAC
GCCTTGGACCGAGTGGTGGGGCTGAGCGAGGAGGAGAAGGGGAAGGTGGA
GAATGAGGTGCAAGAGGCCATGCGCGCTTTCGATGCCTCGgtaaaaaggg
cgagggagggagggagggaggaggaggaggcgttgaaggcagaaggtccg
agtcttccagcgcgtctcgataccgccactcacacagcctccctccgtac
ctccttcctccgtccctccctgcatccctccctcgatcttttcttttcag
GTGGACTCGGCGGAGGTCCTTGAAGCTCAACGGAAGGTGGAGGCGCTCAT
TCAGGACGTGGGAAAGAGGGTGGGGTCCGCTGTGGAGGGCGCGATGGATG
GAGTTAGGGATGGGGAGAAGAAGCCGTAACGGAAGAGAGAAGGGAGGGGT
GGAGGGATGGATGGAGGGGAGGTGTGCATATGTGCGTACAAGCAGTTGAG
AATGAAGCAGTAAAAATTCAAAGACAAATAAGACATATGATCCATAT
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protein sequence of NO03G05530.2

>NO03G05530.2-protein ID=NO03G05530.2-protein|Name=NO03G05530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSPNLPPPLSRRLPAPLARVRRYIEESWESVRPMDNPPGYDEAHGISTKE
KAGNKRWRNPVEHARVWQRAFQAWRNSFDYDTFRREGGLGRGLVRGKAGD
DADAVLRNGWTPEATSATLMEEKKKEMEVFVKERMRDVKLQLSEEEIKAE
VETLRKEWTEGKHQLEEVATDRMELLRITVREFVAGYKEGRDHSAEEVQA
AIEKQMAAFRSLVLEGEWTAEAVEENKQKNLRALRDALDRVVGLSEEEKG
KVENEVQEAMRAFDASVKRAREGGREEEEALKAEGPSLPARLDTATHTAS
LRTSFLRPSLHPSLDLFFSGGLGGGP*
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protein sequence of NO03G05530.1

>NO03G05530.1-protein ID=NO03G05530.1-protein|Name=NO03G05530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MSPNLPPPLSRRLPAPLARVRRYIEESWESVRPMDNPPGYDEAHGISTKE
KAGNKRWRNPVEHARVWQRAFQAWRNSFDYDTFRREGGLGRGLVRGKAGD
DADAVLRNGWTPEATSATLMEEKKKEMEVFVKERMRDVKLQLSEEEIKAE
VETLRKEWTEGKHQLEEVATDRMELLRITVREFVAGYKEGRDHSAEEVQA
AIEKQMAAFRSLVLEGEWTAEAVEENKQKNLRALRDALDRVVGLSEEEKG
KVENEVQEAMRAFDASVDSAEVLEAQRKVEALIQDVGKRVGSAVEGAMDG
VRDGEKKP*
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Synonyms
Publications