NO03G05530.2, NO03G05530.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05530.2
Unique NameNO03G05530.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1256
Alignment locationchr3:1585550..1587796 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1585550..1587796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05530.2 vs.
Match: EWM30030.1 (hypothetical protein Naga_100346g1 [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 2.600e-42
Identity = 88/146 (60.27%), Postives = 114/146 (78.08%), Query Frame = 0 
Query:    1 MSPNLPPPLSRRLPAPLARVRRYIEESWESVRPMDNPPGYDEAHGISTKEKAGNKRWRNPVEHARVWQRAFQAWRNSFDYDTFRREGGLGRGLVRGKAGDDADAVLRNGWTPEATSATLMEEKKKEMEVFVKERMRDVKLQLSEEE 147
            M    PP L RR+P  LARVRRY+EESW S++PMDNPPGYDEA G++ KE    +RWR+P+EHAR WQRAF++W+NSFDYD F  EGGLGRGLVRG+AGD AD  L+NGW+PEA +  L++  +KE+E  V+E++R  + +L+EEE
Sbjct:   17 MPAQFPPSLKRRMPGSLARVRRYLEESWGSLQPMDNPPGYDEALGVTAKEDKP-RRWRSPLEHARTWQRAFKSWQNSFDYDKFTLEGGLGRGLVRGEAGDRADEALKNGWSPEA-ARVLVDGDEKEVESLVREKLRGCRTELTEEE 160
The following BLAST results are available for this feature:
BLAST of NO03G05530.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30030.12.600e-4260.27hypothetical protein Naga_100346g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05530NO03G05530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05530.2NO03G05530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05530.2.cds1NO03G05530.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05530.2.cds2NO03G05530.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05530.2.cds3NO03G05530.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05530.2.cds4NO03G05530.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05530.2.cds5NO03G05530.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05530.2.cds6NO03G05530.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05530.2 ID=NO03G05530.2|Name=NO03G05530.2|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
CACGCCATTACTGAACTCAGTCGGTCCGACATTCCCACAGGAAAGGAAAA
GATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCCT
TGGCCCGGGTTCGTCGTTATATTGAGGAATCATGGGAAAGTGTGCGTCCC
ATGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGA
GAAGGCAGGGAACAAGCGATGGCGTAACCCTGTCGAACACGCCCGCGTCT
GGCAACGAGCCTTTCAAGCCTGGCGCAATTCTTTTGACTACGATACCTTT
AGGAGGGAGGGAGGACTAGGCCGGGGGTTGGTGCGGGGGAAGGCGGGAGA
CGACGCAGATGCTGTGTTGAGGAATGGGTGGACTCCTGAGGCGACTAGCG
CGACCTTGATGGAGGAGAAAAAGAAGGAGATGGAGGTGTTTGTGAAGGAG
AGAATGAGAGACGTAAAGCTGCAACTGAGTGAGGAGGAGATCAAGGCCGA
GGTGGAGACTCTTAGGAAGGAATGGACGGAGGGGAAGCACCAGTTGGAGG
AAGTTGCCACGGATAGGATGGAGCTGCTACGGATAACCGTCCGGGAGTTC
GTGGCGGGGTACAAGGAAGGCCGAGACCACAGCGCGGAGGAAGTGCAGGC
GGCCATCGAGAAGCAGATGGCGGCCTTCAGATCGTTAGTATTAGAGGGGG
AATGGACGGCCGAGGCAGTTGAAGAAAACAAGCAGAAGAATCTCCGGGCT
CTAAGAGACGCCTTGGACCGAGTGGTGGGGCTGAGCGAGGAGGAGAAGGG
GAAGGTGGAGAATGAGGTGCAAGAGGCCATGCGCGCTTTCGATGCCTCGG
TAAAAAGGGCGAGGGAGGGAGGGAGGGAGGAGGAGGAGGCGTTGAAGGCA
GAAGGTCCGAGTCTTCCAGCGCGTCTCGATACCGCCACTCACACAGCCTC
CCTCCGTACCTCCTTCCTCCGTCCCTCCCTGCATCCCTCCCTCGATCTTT
TCTTTTCAGGTGGACTCGGCGGAGGTCCTTGAAGCTCAACGGAAGGTGGA
GGCGCTCATTCAGGACGTGGGAAAGAGGGTGGGGTCCGCTGTGGAGGGCG
CGATGGATGGAGTTAGGGATGGGGAGAAGAAGCCGTAACGGAAGAGAGAA
GGGAGGGGTGGAGGGATGGATGGAGGGGAGGTGTGCATATGTGCGTACAA
GCAGTTGAGAATGAAGCAGTAAAAATTCAAAGACAAATAAGACATATGAT
CCATAT
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protein sequence of NO03G05530.2

>NO03G05530.2-protein ID=NO03G05530.2-protein|Name=NO03G05530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSPNLPPPLSRRLPAPLARVRRYIEESWESVRPMDNPPGYDEAHGISTKE
KAGNKRWRNPVEHARVWQRAFQAWRNSFDYDTFRREGGLGRGLVRGKAGD
DADAVLRNGWTPEATSATLMEEKKKEMEVFVKERMRDVKLQLSEEEIKAE
VETLRKEWTEGKHQLEEVATDRMELLRITVREFVAGYKEGRDHSAEEVQA
AIEKQMAAFRSLVLEGEWTAEAVEENKQKNLRALRDALDRVVGLSEEEKG
KVENEVQEAMRAFDASVKRAREGGREEEEALKAEGPSLPARLDTATHTAS
LRTSFLRPSLHPSLDLFFSGGLGGGP*
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mRNA from alignment at chr3:1585550..1587796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05530.2 ID=NO03G05530.2|Name=NO03G05530.2|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at chr3:1585550..1587796- (Nannochloropsis oceanica)
CACGCCATTACTGAACTCAGTCGGTCCGACATTCCCACAGGAAAGGAAAA
GATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCCT
TGGCCCGGGTTCGTCGGTAAGTTTTGTGGAGGGTGGGGTGTGGTGTCGGT
TGTTTTTGCTCACCGTTCCAGCAAGCAACAGCCTCTCTCTCCCCTTCTAC
ATCACATCCGTATCAACCGCTCCCTCCCTCCTTGCCCTTCTCCTTCTTCC
CTCCCTCCGTTCTAGTTATATTGAGGAATCATGGGAAAGTGTGCGTCCCA
TGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGAG
AAGGCAGGGAACAAGCGATGGTATGGACCCCTGGTGTGCGTGCCCGTATG
CATGGCCGTTGGTTACCCTTCCTTCCCCCTTCATTTTGTCCCAGGCCCTA
CGAATGACAGATTACCTTACCTTAGACCAACAATCCCCCTACCCCCCTTT
CCCCCCTATCCCCCCTAATTTTTCTTACTTCCGCTCTTCTCTCCCATCCC
TCCTCCCTCCCTCCTCCGACTTCTCCATGCCCAAATTACAACAGGCGTAA
CCCTGTCGAACACGCCCGCGTCTGGCAACGAGCCTTTCAAGCCTGGCGCA
ATTCTTTTGACTACGATACCTTTAGGAGGGAGGGAGGACTAGGCCGGGGG
TTGGTGCGGGGGAAGGCGGGAGACGACGCAGATGCTGTGTTGAGGAATGG
GTGGACTCCTGAGGCGACTAGCGCGACCTTGATGGAGGAGAAAAAGAAGG
AGATGGAGGTGTTTGTGAAGGAGAGAATGAGAGACGTAAAGCTGCAACTG
AGTGAGGAGGAGATCAAGGCCGAGGTGGAGACTCTTAGGAAGGAATGGAC
GGAGGGGAAGCACCAGTTGGAGGAAGTTGCCACGGATAGGATGGAGCTGG
TGAGGAGGAAGGGAGGGAGGGGGGGAGGGAGAGAGAGGAGGGAGAAAGGG
CTAGAGAAGGGCTGAAGCGGCGGTGTGTGCACTGGAGAGACGAAAATAAC
CCTAACCCAAACCTTCTTGTAGTCCGTCTGTTCAGAGTTAAGTATGACTC
CGTCTCTCTTCTCATTCCCTCACTATCACCCCTTTTCCTGCCGCCCTCCC
TTCCTCTCTCCCTCCTTCCTCTTCTTCGCCTCCCCCGTAGCTACGGATAA
CCGTCCGGGAGTTCGTGGCGGGGTACAAGGAAGGCCGAGACCACAGCGCG
GAGGAAGTGCAGGCGGCCATCGAGAAGCAGGTAGAGGGGGAGGGAGGGAG
GGAGGGAAGGAGGGAAGAGGTCGAGCCAGCCAGTACTAAAGCGGGTCCTT
CTATCTCCTTTTTGCACATGCAATTACAGATGGCGGCCTTCAGATCGTTA
GTATTAGAGGGGGAATGGACGGCCGAGGCAGTTGAAGAGTAAGTGCTTGC
GTGTCTTGTTGGTGTGATGTGATGCGCCCTCTCCCTCCTTCCCTCCCTCC
CTCCTTTCCTCCCTCCTCTTGCTGGTGTGAGTTGACCCTTTGTGATATGC
CTTTAATCCCTCTTCCTTGTCTCCTCTGTCCCTCTGTCCCTTTGTCCCTC
TATCCCTCCCTCCCTCCCTCCCTCATCCCCTCCATGCCCTATAAGCACCA
GCTCCCAACCCACACACATACTCTCCCTCCCTCCCTCCCTCTCTCCCCCC
CCCCTCTCCCTTGTAGAAACAAGCAGAAGAATCTCCGGGCTCTAAGAGAC
GCCTTGGACCGAGTGGTGGGGCTGAGCGAGGAGGAGAAGGGGAAGGTGGA
GAATGAGGTGCAAGAGGCCATGCGCGCTTTCGATGCCTCGGTAAAAAGGG
CGAGGGAGGGAGGGAGGGAGGAGGAGGAGGCGTTGAAGGCAGAAGGTCCG
AGTCTTCCAGCGCGTCTCGATACCGCCACTCACACAGCCTCCCTCCGTAC
CTCCTTCCTCCGTCCCTCCCTGCATCCCTCCCTCGATCTTTTCTTTTCAG
GTGGACTCGGCGGAGGTCCTTGAAGCTCAACGGAAGGTGGAGGCGCTCAT
TCAGGACGTGGGAAAGAGGGTGGGGTCCGCTGTGGAGGGCGCGATGGATG
GAGTTAGGGATGGGGAGAAGAAGCCGTAACGGAAGAGAGAAGGGAGGGGT
GGAGGGATGGATGGAGGGGAGGTGTGCATATGTGCGTACAAGCAGTTGAG
AATGAAGCAGTAAAAATTCAAAGACAAATAAGACATATGATCCATAT
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Coding sequence (CDS) from alignment at chr3:1585550..1587796-

>NO03G05530.2 ID=NO03G05530.2|Name=NO03G05530.2|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr3:1585550..1587796- (Nannochloropsis oceanica)
ATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCCTT
GGCCCGGGTTCGTCGTTATATTGAGGAATCATGGGAAAGTGTGCGTCCCA
TGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGAG
AAGGCAGGGAACAAGCGATGGCGTAACCCTGTCGAACACGCCCGCGTCTG
GCAACGAGCCTTTCAAGCCTGGCGCAATTCTTTTGACTACGATACCTTTA
GGAGGGAGGGAGGACTAGGCCGGGGGTTGGTGCGGGGGAAGGCGGGAGAC
GACGCAGATGCTGTGTTGAGGAATGGGTGGACTCCTGAGGCGACTAGCGC
GACCTTGATGGAGGAGAAAAAGAAGGAGATGGAGGTGTTTGTGAAGGAGA
GAATGAGAGACGTAAAGCTGCAACTGAGTGAGGAGGAGATCAAGGCCGAG
GTGGAGACTCTTAGGAAGGAATGGACGGAGGGGAAGCACCAGTTGGAGGA
AGTTGCCACGGATAGGATGGAGCTGCTACGGATAACCGTCCGGGAGTTCG
TGGCGGGGTACAAGGAAGGCCGAGACCACAGCGCGGAGGAAGTGCAGGCG
GCCATCGAGAAGCAGATGGCGGCCTTCAGATCGTTAGTATTAGAGGGGGA
ATGGACGGCCGAGGCAGTTGAAGAAAACAAGCAGAAGAATCTCCGGGCTC
TAAGAGACGCCTTGGACCGAGTGGTGGGGCTGAGCGAGGAGGAGAAGGGG
AAGGTGGAGAATGAGGTGCAAGAGGCCATGCGCGCTTTCGATGCCTCGGT
AAAAAGGGCGAGGGAGGGAGGGAGGGAGGAGGAGGAGGCGTTGAAGGCAG
AAGGTCCGAGTCTTCCAGCGCGTCTCGATACCGCCACTCACACAGCCTCC
CTCCGTACCTCCTTCCTCCGTCCCTCCCTGCATCCCTCCCTCGATCTTTT
CTTTTCAGGTGGACTCGGCGGAGGTCCTTGA
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Synonyms
Publications